GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000523-TA|BGIBMGA000523-PA|IPR013098|Immunoglobulin
I-set, IPR007110|Immunoglobulin-like, IPR003598|Immunoglobulin subtype
2
         (162 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    40   1e-05
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   3.9  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    20   8.9  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    20   8.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 39.9 bits (89), Expect = 1e-05
 Identities = 21/68 (30%), Positives = 29/68 (42%)

Query: 77  GHKIAFLCIAKGNPRPHITWFKDGVEIFAHHYLHIHEWPIGEDRVKSKIEIDPATQMDAG 136
           G+ +   CIA GNP P ITW   G  +       I ++      V S + I      D G
Sbjct: 428 GNSVFLKCIASGNPTPEITWELYGRRLSNSERNQIGQYVTVNGDVVSHLNITAIHTNDGG 487

Query: 137 VYECTADN 144
           +Y C A +
Sbjct: 488 LYRCVASS 495



 Score = 30.3 bits (65), Expect = 0.008
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 10/82 (12%)

Query: 70   FDLEYSLGHK--IAFLCIAKGNPRPHITWFKDGVEIFAHHYLHIHEWPIGEDRVKSKIEI 127
            FD  ++  +K  +   C+A G P P ITW   GV+        I + P G       + I
Sbjct: 1312 FDDTFTTTYKEDVTLPCLAVGLPPPVITWKIKGVQFTTSD--KIRQQPDG------SLFI 1363

Query: 128  DPATQMDAGVYECTADNMYSID 149
               ++ +AG Y C  +N Y  D
Sbjct: 1364 RDVSRNNAGEYSCHVENDYGQD 1385



 Score = 28.7 bits (61), Expect = 0.025
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 15/68 (22%)

Query: 77  GHKIAFLCIAKGNPRPHITWFKDGVEIFAHHYLHIHEWPIGEDRVKSKIEIDPATQMDAG 136
           G    F C  +GNP   I+W KDG     H        PI  D  ++ + I+   + D G
Sbjct: 342 GRPATFTCNFEGNPIKTISWLKDG-----H--------PI--DHNEAVLRIESVRKEDKG 386

Query: 137 VYECTADN 144
           +Y+C   N
Sbjct: 387 MYQCFIRN 394



 Score = 26.6 bits (56), Expect = 0.10
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 80  IAFLCIAKGNPRPHITWFKDGVEIFAHHYLHIHEWPIGEDRVKSKIEIDPATQMDAGVYE 139
           +A LC A+G P P   W+K          + +++      +V   + I  A   D+G Y 
Sbjct: 250 VALLCPAQGFPSPSFRWYKFVEGTTRKQAVTLND---RVKQVAGTLIIREAKVEDSGKYL 306

Query: 140 CTADNMYSIDRRSFKTDFSI 159
           C  +N  S+   S +T  ++
Sbjct: 307 CVVNN--SVGGESVETVLTV 324



 Score = 26.2 bits (55), Expect = 0.14
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 71  DLEYSLGHKIAFLCIAKGNPRPHITW 96
           D  ++ G   A  C A G PRP +TW
Sbjct: 707 DKAFAQGSDAAVECKADGFPRPVVTW 732



 Score = 25.0 bits (52), Expect = 0.31
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)

Query: 84  CIAKGNPRPHITWFK-DGVEI 103
           C A GNP P I W + DG  +
Sbjct: 45  CSAHGNPTPDIIWVRSDGTAV 65


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 5/13 (38%), Positives = 8/13 (61%)

Query: 103 IFAHHYLHIHEWP 115
           ++ HHY   H +P
Sbjct: 168 VYTHHYARYHPYP 180


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 47  YRDPESDQYYNNN 59
           Y +P+   YYN N
Sbjct: 352 YPNPQQQYYYNKN 364


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 47  YRDPESDQYYNNN 59
           Y +P+   YYN N
Sbjct: 300 YPNPQQQYYYNKN 312


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.137    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,111
Number of Sequences: 317
Number of extensions: 1628
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 162
length of database: 114,650
effective HSP length: 52
effective length of query: 110
effective length of database: 98,166
effective search space: 10798260
effective search space used: 10798260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)