GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000523-TA|BGIBMGA000523-PA|IPR013098|Immunoglobulin
I-set, IPR007110|Immunoglobulin-like, IPR003598|Immunoglobulin subtype
2
         (162 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.0  
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       26   3.2  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    26   3.2  
SPBC713.08 |tom13||mitochondrial TOM complex subunit Tom13|Schiz...    25   4.2  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   4.2  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    25   7.3  
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    25   7.3  
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual          24   9.6  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    24   9.6  

>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 13/24 (54%), Positives = 13/24 (54%)

Query: 56  YNNNDGAKILLASHFDLEYSLGHK 79
           Y   D AK LLA  FD  YS  HK
Sbjct: 364 YLKKDAAKNLLAKQFDATYSYYHK 387


>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 55 YYNNNDGAKILLASHFDLEYSLGHKIAF 82
          +Y  +  AK+LLAS++ LE  + H I F
Sbjct: 67 HYLISASAKLLLASNYLLELLISHNIQF 94


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 37  VQIGLPITGKYRDPESDQYYNNNDGAKILLASHFDLEYSLGHKIA 81
           ++I  PI+G+  DPES +   N +G +   A + ++ Y L   +A
Sbjct: 75  IEIYKPISGRASDPESYEQEGNAEGIEAAEA-YKEIVYDLQKNLA 118


>SPBC713.08 |tom13||mitochondrial TOM complex subunit
           Tom13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 71

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 102 EIFAHHYLHIHEWPIGEDRVKS 123
           EIFAH ++H   W  G  R+ S
Sbjct: 41  EIFAHAFIHSLGWAPGHTRIYS 62


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 102 EIFAHHYLHIHEWPIGEDRVKSKIEIDPATQMDAGV 137
           E  A +Y+H+ E+       K+ +E+    Q D GV
Sbjct: 385 ECLAKYYIHLKEYEYAIGLSKAALEVLKRLQQDTGV 420


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/36 (33%), Positives = 15/36 (41%)

Query: 25  RRGRPRSRTKSKVQIGLPITGKYRDPESDQYYNNND 60
           R GR   R  S+     P   +YR P  D+Y    D
Sbjct: 236 RGGRDEYRRNSRSDYRRPHDDEYRRPRGDEYRPGRD 271


>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 49  DPESDQYYNNNDGAKILLASHFD 71
           DPE++    + D  KILL +H D
Sbjct: 98  DPEANLALKSGDVVKILLGAHID 120


>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 94  ITWFKDGVEIFAHHYLHIHEW 114
           + W  +GV IF+  YL ++ W
Sbjct: 304 VEWVTNGVAIFSFFYLLLYLW 324


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
          1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 12/30 (40%), Positives = 14/30 (46%)

Query: 40 GLPITGKYRDPESDQYYNNNDGAKILLASH 69
          G+P     +DP SDQ  N N  AK     H
Sbjct: 22 GMPPEYTNQDPNSDQADNENSDAKAHQPQH 51


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.137    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 719,444
Number of Sequences: 5004
Number of extensions: 30396
Number of successful extensions: 59
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 9
length of query: 162
length of database: 2,362,478
effective HSP length: 68
effective length of query: 94
effective length of database: 2,022,206
effective search space: 190087364
effective search space used: 190087364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)