Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000523-TA|BGIBMGA000523-PA|IPR013098|Immunoglobulin
I-set, IPR007110|Immunoglobulin-like, IPR003598|Immunoglobulin subtype
2
(162 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0611 - 22721977-22722276,22722765-22722853,22722978-227230... 36 0.012
01_07_0325 - 42745611-42745700,42745939-42745971,42746069-427461... 29 2.4
09_04_0501 + 18153252-18153453,18153973-18154224,18154809-181550... 27 5.5
05_07_0023 + 27110491-27110775 27 5.5
04_03_0784 - 19610370-19611548,19611830-19611919,19612001-196120... 27 5.5
01_06_1579 + 38402868-38402894,38403394-38403582,38403817-384039... 27 7.3
01_01_0944 + 7437536-7437652,7438468-7438704 27 7.3
01_07_0330 - 42788802-42788891,42789224-42789274,42789365-427893... 27 9.6
>06_03_0611 -
22721977-22722276,22722765-22722853,22722978-22723083,
22723178-22723306,22723803-22723887,22723994-22724103,
22724424-22724624,22725033-22725394,22725612-22725695,
22725791-22725916,22725999-22726161,22726378-22726536,
22727147-22727274,22727371-22727493,22727755-22727899,
22727992-22728068,22728318-22728696,22729325-22729411
Length = 950
Score = 36.3 bits (80), Expect = 0.012
Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 66 LASHFDLEYSLGHKIAFLCIAKGNPRPHITWFKDGVEIFAHHYLHIHEWPIGEDRVKSKI 125
+A + D S+GHK +FL + K + + TW + + + +H+ + +D +K +
Sbjct: 556 VAYYLDHSASVGHKSSFLSLIKNLLKKNPTWRRVSINEVVNDAVHVE--MVKQDIIKERE 613
Query: 126 EIDPATQMDAGVYECTADNMYSI 148
+D Q + Y D++ +
Sbjct: 614 TVDQVLQQQSSGYAVVCDDLKKV 636
>01_07_0325 -
42745611-42745700,42745939-42745971,42746069-42746182,
42746325-42746417,42746502-42746597,42746820-42746924,
42747027-42747284,42748740-42749402
Length = 483
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 111 IHEWPIGEDRVKSKIEIDPATQMDAGVYECTADNMYSIDRRSFKTDF 157
++ +P+ + ++K +EI+ +Q +A + CTA D+ F D+
Sbjct: 418 LNRFPVRQQKMKYVLEINDCSQWEAEFHTCTACITEERDKPRFYDDY 464
>09_04_0501 +
18153252-18153453,18153973-18154224,18154809-18155015,
18155198-18157046,18157334-18157381,18158222-18158291,
18158380-18158475,18158583-18158621,18158714-18158924,
18159037-18159178,18159275-18159407,18159762-18159878
Length = 1121
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 70 FDLEYSLGHKIAFLCIAKGNPRPHITWFKDGVEIFAH------HYLHIHEWPI 116
F + + G + + K P P + W + AH H+ H H+W +
Sbjct: 110 FSISHVAGARPVAAAVVKAEPTPFVLWGQPAAAAAAHPVAALGHHHHHHQWTL 162
>05_07_0023 + 27110491-27110775
Length = 94
Score = 27.5 bits (58), Expect = 5.5
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 29 PRSRTKSKVQIGLPITGKY-RDPESDQYYNNNDGAKILLASH 69
P + S+++ P +Y RDP +Y N+ +G K+L A H
Sbjct: 47 PSASCCSRMKEQQPCLCQYARDPNLQRYVNSPNGKKVLAACH 88
>04_03_0784 -
19610370-19611548,19611830-19611919,19612001-19612076,
19612917-19613134,19613333-19613548,19613974-19614159,
19614242-19614364,19614456-19614571,19615126-19615588
Length = 888
Score = 27.5 bits (58), Expect = 5.5
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 32 RTKSKVQIGLPITGKYRDPESDQYYNNNDGAKILLASHFD-LEYSLGHKI 80
R K+K I L +T K+RD D+ YN + GA+ L + LE SL K+
Sbjct: 800 RLKAK-DIDLQVTEKFRDRVVDEGYNPSYGARPLRRAIMRLLEDSLAEKM 848
>01_06_1579 +
38402868-38402894,38403394-38403582,38403817-38403918,
38404005-38405963,38406050-38406105,38406332-38406368
Length = 789
Score = 27.1 bits (57), Expect = 7.3
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 105 AHHYLHIHEWPIGEDRVKSKIEIDPATQMDAGV-YECTADNMYSIDRRSFKTD 156
+HHY IHE +DRV S + D + + E TA N +D ++ ++D
Sbjct: 330 SHHYNLIHENSDSDDRVSSFGDTDDSEPDSLRLSTETTAANKSLLDEKTDRSD 382
>01_01_0944 + 7437536-7437652,7438468-7438704
Length = 117
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 49 DPESDQYYNNNDGAKILLAS 68
DP+ QYY+N++G K +LA+
Sbjct: 81 DPKEHQYYSNHNGNKGILAN 100
>01_07_0330 -
42788802-42788891,42789224-42789274,42789365-42789397,
42789501-42789614,42789757-42789849,42789934-42790029,
42790255-42790359,42790453-42790768,42790955-42791010,
42791131-42791399,42791616-42791658
Length = 421
Score = 26.6 bits (56), Expect = 9.6
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 111 IHEWPIGEDRVKSKIEIDPATQMDAGVYECTA 142
++ +P+ + ++K +EI+ +Q +A + CTA
Sbjct: 339 LNRFPVRQQKMKYVLEINDCSQWEAEFHTCTA 370
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.137 0.427
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,603,486
Number of Sequences: 37544
Number of extensions: 195474
Number of successful extensions: 282
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 8
length of query: 162
length of database: 14,793,348
effective HSP length: 77
effective length of query: 85
effective length of database: 11,902,460
effective search space: 1011709100
effective search space used: 1011709100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
- SilkBase 1999-2023 -