GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000523-TA|BGIBMGA000523-PA|IPR013098|Immunoglobulin
I-set, IPR007110|Immunoglobulin-like, IPR003598|Immunoglobulin subtype
2
         (162 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17760.1 68417.m02651 expressed protein                             29   2.0  
At1g02730.1 68414.m00226 cellulose synthase family protein simil...    29   2.0  
At4g39570.1 68417.m05595 kelch repeat-containing F-box family pr...    27   8.1  
At2g04135.1 68415.m00397 hypothetical protein                          27   8.1  

>At4g17760.1 68417.m02651 expressed protein
          Length = 300

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 3/35 (8%)

Query: 55  YYNNNDGAKILLASHFDLEYSLGHKIAFLCIAKGN 89
           YY N D   +LLA H D E S G+K  FL     N
Sbjct: 206 YYANTD---LLLAFHCDTEVSYGYKYKFLKATTAN 237


>At1g02730.1 68414.m00226 cellulose synthase family protein similar
           to cellulose synthase catalytic subunit [gi:13925881]
           from Nicotiana alata, cellulose synthase-4 [gi:9622880]
           from Zea mays
          Length = 1181

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 28  RPRSRTKSKVQIGLPITGKYRDPESD 53
           RP++  K   ++ LPI G+Y + E+D
Sbjct: 767 RPKAMMKKDDEVSLPINGEYNEEEND 792


>At4g39570.1 68417.m05595 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 395

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 82  FLCIAKGNPRPHITWF 97
           +LC+ +GNP P+  WF
Sbjct: 86  YLCLQEGNPDPNPLWF 101


>At2g04135.1 68415.m00397 hypothetical protein
          Length = 285

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 4/89 (4%)

Query: 20  NQADGR---RGRPRSRTKSKVQIGLPITG-KYRDPESDQYYNNNDGAKILLASHFDLEYS 75
           N+  GR   R R R R + +   G   +G  +++  S + + N DG K +   + ++ Y 
Sbjct: 177 NRGRGRGYGRDRGRGRGRGRGYTGGRGSGVHFKNSNSHKKWENKDGNKQVKTPYANICYR 236

Query: 76  LGHKIAFLCIAKGNPRPHITWFKDGVEIF 104
            G K  +    KG        ++DGV+ F
Sbjct: 237 CGAKDHWSLKGKGKDVETNLVYEDGVDDF 265


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.137    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,738,785
Number of Sequences: 28952
Number of extensions: 159648
Number of successful extensions: 245
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 4
length of query: 162
length of database: 12,070,560
effective HSP length: 76
effective length of query: 86
effective length of database: 9,870,208
effective search space: 848837888
effective search space used: 848837888
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)