Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000522-TA|BGIBMGA000522-PA|IPR011009|Protein kinase-like
         (192 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      26   3.1  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    26   4.1  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    25   5.4  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    25   7.2  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   7.2  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   7.2  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    25   9.5  
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom...    25   9.5  
SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.5  
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa...    25   9.5  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 47 VLIDGYKIGMTIIAFAAGLSSADSFLHLNPISAYYHTNV 85
          ++  GY+ G T    A       SF  ++ ++A YH N+
Sbjct: 46 LITSGYECGNTFTQIAEIAGEGPSFKTMSNLAAKYHVNI 84


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 169 IFHNFKSEETKETIENVDDSSDS 191
           +FH  KS  +KETI  V +S+ S
Sbjct: 175 LFHGNKSPSSKETIPKVSNSNSS 197


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 128 WLRPMFPYVKKDEWVKEENE 147
           W   + P +KK EW +EE+E
Sbjct: 48  WYEWIDPSIKKTEWSREEDE 67


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)

Query: 113 VWRRRFHYMDQFVPNWLRPMFPY---VKKDEWVKEENEFKR 150
           + RRRFH   + V N ++P + Y   V  DEW     + ++
Sbjct: 684 ILRRRFHATSEQVENCVKP-YKYDVEVNDDEWKSSRGQAEK 723


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 111 LRVWRRRFHYMDQFVPNWLRPMFPY 135
           LRV  R+   M QF P +  P +PY
Sbjct: 434 LRVEFRQLRPMQQFSPQYQYPSYPY 458


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 10/60 (16%)

Query: 14  WKPRLGID-LNLPTTEKKFRAFLPTKHNIEEGVV---VLIDGY------KIGMTIIAFAA 63
           + PR  I+ LNLPT    +  +L    NI + VV     +DGY      K+G+  ++FA+
Sbjct: 53  YAPRTTIEGLNLPTLSSSYYKWLMDLVNIPDDVVQNCAGLDGYVFLLFFKMGIKFLSFAS 112


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 501

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 73 HLNPISAYYHTNVYRWALRYVSLF 96
          H  PIS +Y +++  W L Y   F
Sbjct: 41 HSLPISEWYKSSISEWTLDYPPFF 64


>SPBC776.07 |||mitochondrial Mam33 family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 145 ENEFKRFKKYAEPSFGKHYRYPSKIFHNFKSE 176
           E E+KR K+Y  PSF +       +FH++  E
Sbjct: 203 EAEWKRRKQYLGPSFKELDPELQDLFHSYLEE 234


>SPCC191.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 153 KYAEPSFGKHYRYPSKIFHNFKSEET 178
           +YA PS    +R+PS   H++  +++
Sbjct: 30  RYASPSMHLDWRFPSLRIHSYPKDQS 55


>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
           Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 148 FKRFKKYAEPSFGKHYRYPSKIF--HNFKSEETKETIENV 185
           F  F K+AE SF K   +  K       +SE+ K   EN+
Sbjct: 232 FSTFAKFAETSFAKKDPFARKFVPSEKLRSEQRKFPTENL 271


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.139    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,040,773
Number of Sequences: 5004
Number of extensions: 47553
Number of successful extensions: 113
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 105
Number of HSP's gapped (non-prelim): 11
length of query: 192
length of database: 2,362,478
effective HSP length: 69
effective length of query: 123
effective length of database: 2,017,202
effective search space: 248115846
effective search space used: 248115846
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 51 (24.6 bits)