Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000522-TA|BGIBMGA000522-PA|IPR011009|Protein kinase-like
         (192 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051...    31   0.38 
At3g49510.1 68416.m05411 F-box family protein contains Pfam PF00...    29   2.0  
At5g19660.1 68418.m02339 subtilase family protein contains Pfam ...    28   4.7  
At3g20690.1 68416.m02618 F-box protein-related ontains weak hit ...    28   4.7  
At3g14780.1 68416.m01868 expressed protein                             27   6.2  
At4g20910.1 68417.m03031 double-stranded RNA binding protein-rel...    27   8.1  
At3g45400.1 68416.m04901 exostosin family protein contains Pfam ...    27   8.1  
At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containi...    27   8.1  
At2g32310.1 68415.m03950 expressed protein                             27   8.1  
At1g13510.1 68414.m01584 expressed protein                             27   8.1  
At1g03530.1 68414.m00334 expressed protein similar to hypothetic...    27   8.1  

>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
           Krr1 family
          Length = 638

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 121 MDQFVPNWLRPMFPYVKKDEWVKEENEFKRFKKYAEPSFGKHYRYPSKIFHNFKSEETKE 180
           ++Q+VP  L+ M PYV+KD  V      ++ +K  E   GKH    SK        ETK 
Sbjct: 530 LNQYVP--LKKMAPYVEKDWEVNRHKVKEQKRKIRELWEGKHDEKKSKKRKKNDVVETKP 587

Query: 181 TIENVDDSSDS 191
           T +  +  +++
Sbjct: 588 TPKEAEAEAEA 598


>At3g49510.1 68416.m05411 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 662

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 134 PYVKKDEWVKEENEFKRFKKYA-EPSFGKHYRYPSKIFHNFKSEETKET-IENVDDSSDS 191
           PY+ + +W++  N F R+ ++A      ++++    ++    +E ++ T I+  D SSDS
Sbjct: 125 PYLGQTKWIRPRNTFHRYDRFALGYDNNRNHKILRFLYDEESNESSRRTHIDVYDFSSDS 184


>At5g19660.1 68418.m02339 subtilase family protein contains Pfam
           profile: PF00082 subtilase family
          Length = 1038

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 136 VKKDEWVKEEN-EFKRFKKYAEPSFGKHYRYPSKIFHNFKSEETKETIENVDDSSDSL 192
           +++ E VK+ N EFK  +     SF    + P KIF +   EE  E+    D S+ +L
Sbjct: 117 IERLEMVKDVNVEFKYQRVLLGGSFPDGKKRPGKIFTSMSFEEGTESSPMADTSNTTL 174


>At3g20690.1 68416.m02618 F-box protein-related ontains weak hit to
           TIGRFAM TIGR01640 : F-box protein interaction domain;
           contains weak hit to Pfam PF00646: F-box domain
          Length = 370

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 134 PYVKKDEWVKEENEFKRFKKYA---EPSFGKHYRYPSKIFHNFKSEETKETIENVDDSS 189
           PY  K EWVK  N F  F K A   + S G H     KI   F S   +  I N+  +S
Sbjct: 133 PYWGKREWVKRINNFASFDKLAFGYDKSCGCH-----KILRVFDSYPNRLEIYNLRSNS 186


>At3g14780.1 68416.m01868 expressed protein
          Length = 275

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 137 KKDEWVKEENEFKRFKKYAEPSFGKHYRYPSKIFHNFKSEETKETIENVDDSSDSL 192
           +KD+  KEE + K+ K++A   +G     PS +F+  K  ET+E +  ++   + +
Sbjct: 183 EKDDIYKEEVQIKKDKRFA---YGSMKAVPS-LFYEDKYLETQEKLNKLEKKIEEM 234


>At4g20910.1 68417.m03031 double-stranded RNA binding
           protein-related / DsRBD protein-related contains weak
           similarity to Pfam profile PF00035: Double-stranded RNA
           binding motif
          Length = 942

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 160 GKHYRYPSKIFHNFKSEETKETIENVDDSSDS 191
           GKH   P  I H     +   T+E V DSS S
Sbjct: 5   GKHTPTPKAIIHQKFGAKASYTVEEVHDSSQS 36


>At3g45400.1 68416.m04901 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 475

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 122 DQFVPNWLRPMFPYVKKDEWVKEENEFKRFKKYAEPSFGKHYRYPSKI 169
           D    N+L  +   + K+EW +  N  K  +KY E      + +PSK+
Sbjct: 384 DALKENFLVNLIRGITKEEWTRMWNRLKEVEKYYE------FHFPSKV 425


>At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containing
           protein contains Pfam profile PF01388: ARID/BRIGHT DNA
           binding domain
          Length = 747

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 125 VPNWLRPMFPYVKKDEWVKEENEFK 149
           +PNWL P  P  K+ E  +E  E +
Sbjct: 447 IPNWLTPPLPTRKRSEPCRESKEIE 471


>At2g32310.1 68415.m03950 expressed protein
          Length = 325

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 119 HYMDQFVPNWLRPMFPYVKKDEWVKEENEFKRFKKYAEPSFGKHYRYPSKIFHNFKSEET 178
           H+     PN L P+   ++++++ +EE + + F+K     F K +RY S+     K + +
Sbjct: 250 HHEQVVPPNELDPLT--IQRNQY-REEAKQRYFEKKRSRKFVKAHRYESRAQTAAKKKRS 306

Query: 179 KETIENVDDSSDS 191
           +      DD  D+
Sbjct: 307 RGRFVKNDDEFDN 319


>At1g13510.1 68414.m01584 expressed protein 
          Length = 380

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 117 RFHYMDQFVPNWLRPMFPYVKKDEWVKEENEFKRFK 152
           R++Y     P+ + P F  +KK++W  E + F+ F+
Sbjct: 155 RYYYATSVAPDGVSPWF--LKKNKWTVEYSRFQDFE 188


>At1g03530.1 68414.m00334 expressed protein similar to hypothetical
           protein GB:O14360
          Length = 797

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 138 KDEWVKEENEFKRFKKYAEPSFGKHYRYPSKIFHNFKSEETKETIENVDDSSD 190
           +DE  KEEN  K+ +K+     GK       +  N   E   + IE+ DD  D
Sbjct: 271 EDESDKEEN--KKEEKFEHMVVGKEDDLAGDLKRNLDEENGDDDIEDEDDDDD 321


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.139    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,228,381
Number of Sequences: 28952
Number of extensions: 234389
Number of successful extensions: 557
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 552
Number of HSP's gapped (non-prelim): 12
length of query: 192
length of database: 12,070,560
effective HSP length: 77
effective length of query: 115
effective length of database: 9,841,256
effective search space: 1131744440
effective search space used: 1131744440
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)