GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000522-TA|BGIBMGA000522-PA|IPR011009|Protein kinase-like
         (192 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0713 - 31402534-31403131,31403281-31403430,31403526-31403728     29   2.4  
01_01_0105 - 785373-786489,786844-787619                               29   2.4  
12_02_0107 - 13669781-13671982                                         28   4.2  
11_06_0179 + 20952070-20955228                                         28   4.2  
01_01_0103 - 773727-774737,774797-774813,774852-775078,777465-77...    28   4.2  
09_06_0195 - 21477817-21478119,21478216-21478366,21478459-214786...    27   7.4  
01_01_0114 - 851249-852372,852577-852740,852838-853568                 27   7.4  

>01_06_0713 - 31402534-31403131,31403281-31403430,31403526-31403728
          Length = 316

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 118 FHYMDQFVPNWLRPMFPYVKKDEWVKE 144
           F ++DQ+ P W R   P +  +EW +E
Sbjct: 254 FGWIDQYHPTWHRSYAPLLPPEEWERE 280


>01_01_0105 - 785373-786489,786844-787619
          Length = 630

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 50  DGYKIGMTIIAFAAGLSSADSFLHLNPISAYYHTNVYRWALR 91
           D Y  GM ++  A G  +AD     N   AYY + VYR   R
Sbjct: 495 DVYSFGMLLLEMAGGRRNADPNAE-NSSQAYYPSRVYRQLTR 535


>12_02_0107 - 13669781-13671982
          Length = 733

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 16 PRLGIDLNLPTTEKKFRAFLPTKHNIEEGVVVLIDGYKIGMTIIAFAAGLSSAD 69
          P   ID++    EK +R+FLP +          I  YK   TI  FA  ++ A+
Sbjct: 45 PNFSIDMSNIKLEKWYRSFLPPRMTSSNTRQAFIYTYK--TTIFGFAVNITEAE 96


>11_06_0179 + 20952070-20955228
          Length = 1052

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 135 YVKKDEWVKEENEFKRFKKYAEPSFGKH--YRYPSKIFHNFKSEETKETIE 183
           Y K     K  ++   F   +EPS      Y YP   FHNF+   T E  E
Sbjct: 797 YEKNTSLPKNGHDANGFGNSSEPSCPSPSIYSYPDSEFHNFEEGRTCEKFE 847


>01_01_0103 -
           773727-774737,774797-774813,774852-775078,777465-778237
          Length = 675

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 50  DGYKIGMTIIAFAAGLSSADSFLHLNPISAYYHTNVY 86
           D Y  GM ++  A G  +AD   + N   AYY   VY
Sbjct: 533 DVYSFGMLLLEMAGGRRNADPNANSNASRAYYPAWVY 569


>09_06_0195 -
           21477817-21478119,21478216-21478366,21478459-21478696,
           21478786-21478996,21479162-21479361,21479453-21479545,
           21479722-21481093
          Length = 855

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 133 FPYVKKDEWVKEENEFKRFKKYAEPSFGKHYR 164
           FP+VK D+ V   N F +     +  FGK Y+
Sbjct: 524 FPFVKFDDIVAATNNFSKSFMVGQGGFGKVYK 555


>01_01_0114 - 851249-852372,852577-852740,852838-853568
          Length = 672

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 50  DGYKIGMTIIAFAAGLSSADSFLHLNPISAYYHTNVY 86
           D Y  GM ++  A G  +AD   + N   +YY + VY
Sbjct: 538 DVYSFGMLLLEMAGGRRNADPNTNPNASQSYYPSWVY 574


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.139    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,232,114
Number of Sequences: 37544
Number of extensions: 269117
Number of successful extensions: 480
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 476
Number of HSP's gapped (non-prelim): 7
length of query: 192
length of database: 14,793,348
effective HSP length: 78
effective length of query: 114
effective length of database: 11,864,916
effective search space: 1352600424
effective search space used: 1352600424
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)