GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000522-TA|BGIBMGA000522-PA|IPR011009|Protein kinase-like
         (192 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41660| Best HMM Match : PyrI_C (HMM E-Value=4.6)                    32   0.35 
SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.35 
SB_26584| Best HMM Match : Peptidase_M3 (HMM E-Value=0)                31   0.46 
SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)                 31   0.61 
SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)                   30   1.1  
SB_37318| Best HMM Match : RHS_repeat (HMM E-Value=0)                  30   1.1  
SB_33293| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_5148| Best HMM Match : RVT_1 (HMM E-Value=1.7e-27)                  29   3.3  
SB_1821| Best HMM Match : SRP19 (HMM E-Value=3.3)                      29   3.3  
SB_35188| Best HMM Match : RVT_1 (HMM E-Value=2.3e-25)                 28   4.3  
SB_30157| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-40)                 28   4.3  
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_34021| Best HMM Match : Zip (HMM E-Value=0)                         28   5.7  
SB_8858| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.5  
SB_19192| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 
SB_7362| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   10.0 
SB_54374| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 
SB_47519| Best HMM Match : rve (HMM E-Value=4.3e-09)                   27   10.0 

>SB_41660| Best HMM Match : PyrI_C (HMM E-Value=4.6)
          Length = 367

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 20  IDLNLPTTEKKFRAFLPTKHNIEEGVVVLID-GYKIGMTIIAFAAGLSSADSFLHLNPIS 78
           +D++L ++ KKF +       ++  ++  ID G  + M ++  +A   + D F+ L+ +S
Sbjct: 208 LDVSLQSSYKKFHSTETALIKVQNDILCAIDGGNSVLMLLLDLSAAFDTVDHFILLSRLS 267

Query: 79  AYYHT--NVYRWALRYVS 94
             Y    NV  W   Y++
Sbjct: 268 LSYGLTGNVLAWFRSYLT 285


>SB_22944| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2468

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 20   IDLNLPTTEKKFRAFLPTKHNIEEGVVVLID-GYKIGMTIIAFAAGLSSADSFLHLNPIS 78
            +D++L ++ KKF +       ++  ++  ID G  + M ++  +A   + D F+ L+ +S
Sbjct: 2309 LDVSLQSSYKKFHSTETALIKVQNDILCAIDGGNSVLMLLLDLSAAFDTVDHFILLSRLS 2368

Query: 79   AYYHT--NVYRWALRYVS 94
              Y    NV  W   Y++
Sbjct: 2369 LSYGLTGNVLAWFRSYLT 2386


>SB_26584| Best HMM Match : Peptidase_M3 (HMM E-Value=0)
          Length = 851

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 38  KHNIEEGVVVLIDGYKIGMTIIAFAAGLSSADSFLHLNPISAYYHTNVYRWALRYVSLFP 97
           KH +++    ++   +   T+I F +G++    F HLN   A Y++  Y W+    S+  
Sbjct: 454 KHPLQKNTTDIMSDIQKEHTVIPFVSGVAWQQRFSHLNGYGARYYS--YLWSRAVASM-- 509

Query: 98  VW 99
           VW
Sbjct: 510 VW 511


>SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 930

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 114 WRRRFHYMDQFVPNWLRPMFPYVKKD--EWVK 143
           W  RFHY  + VP W++    Y K+D   WVK
Sbjct: 312 WVLRFHYSKEDVPPWVKVREVYSKEDVPPWVK 343


>SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)
          Length = 1296

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/44 (31%), Positives = 20/44 (45%)

Query: 74  LNPISAYYHTNVYRWALRYVSLFPVWFTGNGGNYCETLRVWRRR 117
           LN IS      +   ++ Y +   VW  G  G + +  RVW RR
Sbjct: 212 LNVISVPSRPTITAVSIEYTTARIVWTAGYDGGFAQRFRVWYRR 255


>SB_37318| Best HMM Match : RHS_repeat (HMM E-Value=0)
          Length = 411

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 91  RYVSLFPVWFTGNGGNYCETLRVWRRRFHYMDQFVPNWLRPMFPYVKKDEWVKEENEFKR 150
           +Y  L  VWF  N    C  L VW  R   +++ +PN     + Y      V  E+E   
Sbjct: 86  KYGQLTGVWFPDNS---CHRL-VWNERGQLLEELLPNGGSKRYRYDDLGRQVAREDEQGA 141

Query: 151 FKKYAEPSFGKHYR 164
             +Y   S G+  R
Sbjct: 142 LTQYQWDSVGRLIR 155


>SB_33293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 20  IDLNLPTTEKKFRAFLPTKHNIEEGVVVLID-GYKIGMTIIAFAAGLSSADSFLHLNPIS 78
           +D++L ++ KKF +       ++  ++  ID G  + M ++  +A   + D  + L+ +S
Sbjct: 57  LDVSLQSSYKKFHSTETALIKVQNDILCAIDGGNSVLMLLLDLSAAFDTVDHSILLSRLS 116

Query: 79  AYYHT--NVYRWALRYVS 94
             Y    NV  W   Y++
Sbjct: 117 LSYGLTGNVLAWFRSYLT 134


>SB_5148| Best HMM Match : RVT_1 (HMM E-Value=1.7e-27)
          Length = 286

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 20  IDLNLPTTEKKFRAFLPTKHNIEEGVVVLID-GYKIGMTIIAFAAGLSSADSFLHLNPIS 78
           +D++L ++ KKF +       ++  ++  ID G  + M ++  +A   + D  + L+ +S
Sbjct: 57  LDVSLQSSYKKFHSTETALIKVQNDILCAIDGGNSVLMLLLDLSAAFDTVDHSILLSRLS 116

Query: 79  AYYHT--NVYRWALRYVS 94
             Y    NV  W   Y++
Sbjct: 117 LSYGLTGNVLAWFRSYLT 134


>SB_1821| Best HMM Match : SRP19 (HMM E-Value=3.3)
          Length = 366

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 9/37 (24%), Positives = 20/37 (54%)

Query: 131 PMFPYVKKDEWVKEENEFKRFKKYAEPSFGKHYRYPS 167
           PM+P     +W   ++ F+RF ++ + +    Y +P+
Sbjct: 274 PMYPESTTQDWATRQHGFRRFWRWPKRALESGYAFPT 310


>SB_35188| Best HMM Match : RVT_1 (HMM E-Value=2.3e-25)
          Length = 467

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 20  IDLNLPTTEKKFRAFLPTKHNIEEGVVVLIDGYK-IGMTIIAFAAGLSSADSFLHLNPIS 78
           +D++L ++ KKF +       ++  ++  IDG   + M ++  +A   + D  + L+ +S
Sbjct: 53  LDVSLKSSYKKFHSTETALIKVQNDILCAIDGGNLVLMLLLDLSASFDTVDHSILLSRLS 112

Query: 79  AYYHT--NVYRWALRYVS 94
             Y    NV  W   Y++
Sbjct: 113 LSYGLTGNVLAWFRSYLT 130


>SB_30157| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-40)
          Length = 312

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 124 FVPNWLRPMFPYVKKDEWVKEENEFKRFKKYAEPSFGKHYRYP 166
           FV  WL P F  V    W K E+ F  F+KY  P F    R P
Sbjct: 198 FVVCWL-PFFIIVVLSLWCKPEDCFAAFQKY--PKFSLAIRIP 237


>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 130 RPMFPYVKKDEWVKEENEFKRFKKYAEPSFGKHYRYPSKIFHNFKSEETKETIENVDDSS 189
           RP+ P  K +E   +E+E  +F K  E    K     SKI +  + E+ K   ++++D  
Sbjct: 375 RPLSPGNKPNEESDDEDELDKFMKGIEEEVKKD---TSKIPNKTEKEKQKARRDDIEDED 431

Query: 190 D 190
           D
Sbjct: 432 D 432


>SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/25 (44%), Positives = 18/25 (72%)

Query: 149 KRFKKYAEPSFGKHYRYPSKIFHNF 173
           KR++KY +PSF +H  +   IF++F
Sbjct: 158 KRYEKYLDPSFFQHRIHWFSIFNSF 182


>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
          Length = 808

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 12/83 (14%)

Query: 2   IRTRSTIPGTFFWKPRLGIDLNLPTTEKKFRAFLPTKHNIEEGVVVLIDGYKIGMTIIAF 61
           +R+ ST+     W   LG  L +         F+P + N EE   +L         ++AF
Sbjct: 406 VRSTSTV-----WLEALGSTLLISAAPFFILFFIPLEGNSEEQQPLL-------RILLAF 453

Query: 62  AAGLSSADSFLHLNPISAYYHTN 84
           A+G    D+FLHL P +   H++
Sbjct: 454 ASGGLLGDAFLHLIPHAINPHSH 476


>SB_8858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 886

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 17/74 (22%), Positives = 31/74 (41%)

Query: 58  IIAFAAGLSSADSFLHLNPISAYYHTNVYRWALRYVSLFPVWFTGNGGNYCETLRVWRRR 117
           +++FA   S +D+ + L+  S   H N        + +FPV    +        RV    
Sbjct: 641 VVSFALSTSESDALVKLSVDSGTVHVNFPGMVFPPIYVFPVITPESSARDLRPGRVDHVH 700

Query: 118 FHYMDQFVPNWLRP 131
            H+ D+  P+ + P
Sbjct: 701 VHWQDRDRPSGIYP 714


>SB_19192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 128 WLRPMFPYVKKDEWVKEENEFKRFKKYAEPSFGKHYRYPSKIFH 171
           WL   F + +KDEW    N+ KR+ K + PS   + +     FH
Sbjct: 164 WLSGKF-FNRKDEWEMIANKSKRWLKSSLPSGVDYGKLMGDAFH 206


>SB_7362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 578

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 20  IDLNLPTTEKKFRAFLPTKHNIEEGVVVLID-GYKIGMTIIAFAAGLSSADSFLHLNPIS 78
           +D++L ++ KKF +       ++  ++  ID G  + + ++  +A   + D  + L+ +S
Sbjct: 314 LDVSLQSSYKKFHSTETALIKVQNDILCTIDGGNSVLILLLDLSAAFDAVDHSILLSRLS 373

Query: 79  AYYHT--NVYRWALRYVS 94
             Y    NV  W   Y++
Sbjct: 374 LSYGLTGNVLAWFRSYLT 391


>SB_54374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 20  IDLNLPTTEKKFRAFLPTKHNIEEGVVVLID-GYKIGMTIIAFAAGLSSADSFLHLNPIS 78
           +D++L ++ KKF +       ++  ++  ID G  + + ++  +A   + D  + L+ +S
Sbjct: 36  LDVSLQSSYKKFHSTETALIKVQNDILCTIDGGNSVLILLLDLSAAFDAVDHSILLSRLS 95

Query: 79  AYYHT--NVYRWALRYVS 94
             Y    NV  W   Y++
Sbjct: 96  LSYGLTGNVLAWFRSYLT 113


>SB_47519| Best HMM Match : rve (HMM E-Value=4.3e-09)
          Length = 321

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 112 RVWRRRFHYMDQFVPNWLRPMFPY-VKKDEWVKEENEFKR 150
           R WR   +  DQF   W R   P+ V++ +W   +   +R
Sbjct: 222 RQWRHSQYLADQFWRQWRREYVPHLVQRSKWRAIQRNLRR 261


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.139    0.450 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,184,645
Number of Sequences: 59808
Number of extensions: 302446
Number of successful extensions: 627
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 622
Number of HSP's gapped (non-prelim): 19
length of query: 192
length of database: 16,821,457
effective HSP length: 78
effective length of query: 114
effective length of database: 12,156,433
effective search space: 1385833362
effective search space used: 1385833362
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)