Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000520-TA|BGIBMGA000520-PA|IPR004145|Protein of unknown
function DUF243
         (309 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ...    29   5.2  
At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein ...    28   9.1  

>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein similar
           to SP|O59800 Cell cycle control protein cwf5
           {Schizosaccharomyces pombe}; contains Pfam profile:
           PF00076 RNA recognition motif (aka RRM, RBD, or RNP
           domain)
          Length = 483

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 109 PLVQKHIYVHVPPPEPVEQRLPRIPAVAP 137
           P++Q   Y+H PPP+P  Q  P  P++ P
Sbjct: 337 PMLQ--YYMHPPPPQPPHQDRPFYPSMDP 363


>At2g02070.1 68415.m00143 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 602

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 120 PPPEPVEQRLPRIPAVAPPQK 140
           PPP P   + P  P  APPQK
Sbjct: 32  PPPPPPHHQAPLPPLEAPPQK 52


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.138    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,637,594
Number of Sequences: 28952
Number of extensions: 134499
Number of successful extensions: 773
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 771
Number of HSP's gapped (non-prelim): 2
length of query: 309
length of database: 12,070,560
effective HSP length: 81
effective length of query: 228
effective length of database: 9,725,448
effective search space: 2217402144
effective search space used: 2217402144
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)