GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000520-TA|BGIBMGA000520-PA|IPR004145|Protein of unknown
function DUF243
         (309 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305...    29   3.6  
02_02_0494 + 10944354-10944516,10945358-10945496,10946431-10946635     29   4.7  
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809...    28   8.3  
03_01_0251 - 1956985-1957058,1957238-1957361,1957646-1957744,195...    28   8.3  
01_06_0789 - 32010131-32010330,32010438-32010866,32011658-320117...    28   8.3  

>08_02_1291 +
           25930056-25930067,25930289-25930334,25930434-25930546,
           25930645-25930930,25931357-25931421,25931642-25931693,
           25931774-25931883,25932611-25932641,25932853-25933004,
           25934622-25934840
          Length = 361

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 2/21 (9%)

Query: 289 GHGGAT--STPYGPPGHVAGP 307
           G+GG     +PYGPP H+AGP
Sbjct: 122 GYGGRLPMGSPYGPPMHMAGP 142


>02_02_0494 + 10944354-10944516,10945358-10945496,10946431-10946635
          Length = 168

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 275 DFGATGGDETIVEGGHGGATSTPYG 299
           D G  GG+  +VE G  G  +TPYG
Sbjct: 58  DSGDEGGENCVVEVGEKGQHATPYG 82


>11_02_0082 -
           8088169-8088284,8088613-8088697,8090344-8090442,
           8090537-8090609,8090694-8090804,8090901-8091074,
           8091184-8091574,8091662-8092283,8092379-8093251,
           8093294-8093800
          Length = 1016

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 120 PPPEPVEQRLPRIPAVAPPQ 139
           PP +P+   LP+ PA  PPQ
Sbjct: 555 PPHDPLAPSLPQAPAATPPQ 574


>03_01_0251 -
           1956985-1957058,1957238-1957361,1957646-1957744,
           1957821-1957919,1958097-1958195,1958306-1958404,
           1958744-1958820,1959232-1959952
          Length = 463

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 9/18 (50%), Positives = 15/18 (83%)

Query: 181 EQPDIIIPTPAPTQPSKP 198
           E+PD+ +P+PAP+  S+P
Sbjct: 79  EEPDVDLPSPAPSTTSRP 96


>01_06_0789 -
           32010131-32010330,32010438-32010866,32011658-32011752,
           32011836-32011933,32012586-32012942,32013615-32013792,
           32013856-32013936,32014441-32014548,32014916-32015178
          Length = 602

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 109 PLVQKHIYVHVPPPEPVEQRLPRIPAVAPPQ 139
           P+++ H  VHVP P P       +P V P Q
Sbjct: 45  PVMRSHHVVHVPLPRPAVAVAVPVPQVRPAQ 75


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.138    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,466,325
Number of Sequences: 37544
Number of extensions: 206347
Number of successful extensions: 1072
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1067
Number of HSP's gapped (non-prelim): 6
length of query: 309
length of database: 14,793,348
effective HSP length: 82
effective length of query: 227
effective length of database: 11,714,740
effective search space: 2659245980
effective search space used: 2659245980
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 60 (28.3 bits)