GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000520-TA|BGIBMGA000520-PA|IPR004145|Protein of unknown
function DUF243
         (309 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59677| Best HMM Match : RVT_1 (HMM E-Value=2.1e-28)                 29   6.4  
SB_38362| Best HMM Match : BRCT (HMM E-Value=0)                        29   6.4  
SB_58965| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_53643| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_42534| Best HMM Match : DUF699 (HMM E-Value=0)                      28   8.4  
SB_46973| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_26460| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_8985| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  
SB_6374| Best HMM Match : SpoV (HMM E-Value=9.6)                       28   8.4  
SB_862| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.4  

>SB_59677| Best HMM Match : RVT_1 (HMM E-Value=2.1e-28)
          Length = 1159

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 178  KPEEQPDIIIPTPAPTQPSKPEVYFIKYQTQKE 210
            KP ++ DI +  P+P++P+KP +     Q Q+E
Sbjct: 1091 KPPQKEDIEMHCPSPSRPAKPAMPTTHKQQQQE 1123


>SB_38362| Best HMM Match : BRCT (HMM E-Value=0)
          Length = 1572

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 176  VKKPEEQPDIIIPTPAPTQPSKPEVY 201
            VKKPE Q  +   + +PT+P +P+VY
Sbjct: 1302 VKKPEPQNLLEEHSDSPTEPPRPDVY 1327


>SB_58965| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 42

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 9/18 (50%), Positives = 16/18 (88%)

Query: 177 KKPEEQPDIIIPTPAPTQ 194
           ++ +EQPDI+ P+PAP++
Sbjct: 3   REQQEQPDIVDPSPAPSE 20


>SB_53643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 98

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 9/18 (50%), Positives = 16/18 (88%)

Query: 177 KKPEEQPDIIIPTPAPTQ 194
           ++ +EQPDI+ P+PAP++
Sbjct: 59  REQQEQPDIVDPSPAPSE 76


>SB_51570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1950

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 178  KPEEQPDIIIPTPAPTQPSKPEVYFIKYQTQKE 210
            +P EQ +I +  P+P++P+KP +     Q Q+E
Sbjct: 1881 QPPEQEEIEMHCPSPSRPAKPAMPTTHKQLQQE 1913


>SB_42534| Best HMM Match : DUF699 (HMM E-Value=0)
          Length = 739

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 9/18 (50%), Positives = 16/18 (88%)

Query: 177 KKPEEQPDIIIPTPAPTQ 194
           ++ +EQPDI+ P+PAP++
Sbjct: 556 REQQEQPDIVDPSPAPSE 573


>SB_46973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 9/18 (50%), Positives = 16/18 (88%)

Query: 177 KKPEEQPDIIIPTPAPTQ 194
           ++ +EQPDI+ P+PAP++
Sbjct: 34  REQQEQPDIVDPSPAPSE 51


>SB_26460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 9/18 (50%), Positives = 16/18 (88%)

Query: 177 KKPEEQPDIIIPTPAPTQ 194
           ++ +EQPDI+ P+PAP++
Sbjct: 3   REQQEQPDIVDPSPAPSE 20


>SB_8985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 9/18 (50%), Positives = 16/18 (88%)

Query: 177 KKPEEQPDIIIPTPAPTQ 194
           ++ +EQPDI+ P+PAP++
Sbjct: 24  REQQEQPDIVDPSPAPSE 41


>SB_6374| Best HMM Match : SpoV (HMM E-Value=9.6)
          Length = 202

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 9/18 (50%), Positives = 16/18 (88%)

Query: 177 KKPEEQPDIIIPTPAPTQ 194
           ++ +EQPDI+ P+PAP++
Sbjct: 3   REQQEQPDIVDPSPAPSE 20


>SB_862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 9/18 (50%), Positives = 16/18 (88%)

Query: 177 KKPEEQPDIIIPTPAPTQ 194
           ++ +EQPDI+ P+PAP++
Sbjct: 64  REQQEQPDIVDPSPAPSE 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.138    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,673,852
Number of Sequences: 59808
Number of extensions: 188924
Number of successful extensions: 620
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 609
Number of HSP's gapped (non-prelim): 11
length of query: 309
length of database: 16,821,457
effective HSP length: 82
effective length of query: 227
effective length of database: 11,917,201
effective search space: 2705204627
effective search space used: 2705204627
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 60 (28.3 bits)