GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000520-TA|BGIBMGA000520-PA|IPR004145|Protein of unknown
function DUF243
         (309 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical p...    29   5.6  
U97016-8|AAB52350.2|  779|Caenorhabditis elegans Hypothetical pr...    29   5.6  

>AF125459-4|AAD12839.1|  287|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7b protein.
          Length = 287

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 271 EISGDFGATGGDETIVEGGHGGATSTPYGPPGHV 304
           E SG FG   GD  I+ GG  GATS+   P G V
Sbjct: 26  EQSGAFGGNIGDRNILVGGSVGATSSA-APSGGV 58


>AF125459-3|AAX88817.1|  277|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7a protein.
          Length = 277

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 271 EISGDFGATGGDETIVEGGHGGATSTPYGPPGHV 304
           E SG FG   GD  I+ GG  GATS+   P G V
Sbjct: 16  EQSGAFGGNIGDRNILVGGSVGATSSA-APSGGV 48


>AF125459-2|AAX88818.1|  414|Caenorhabditis elegans Hypothetical
           protein Y25C1A.7c protein.
          Length = 414

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 271 EISGDFGATGGDETIVEGGHGGATSTPYGPPGHV 304
           E SG FG   GD  I+ GG  GATS+   P G V
Sbjct: 16  EQSGAFGGNIGDRNILVGGSVGATSSA-APSGGV 48


>Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical
           protein Y69H2.14 protein.
          Length = 338

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 274 GDFGATGGDETIVEGGHGGATSTPYGPPGHVAGP 307
           GD GA G    +V G        P GPPG +AGP
Sbjct: 246 GDAGAPGAPGQVVAGPGSVGPPGPQGPPG-LAGP 278


>U97016-8|AAB52350.2|  779|Caenorhabditis elegans Hypothetical
           protein B0261.1 protein.
          Length = 779

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 3/23 (13%)

Query: 120 PPPEP---VEQRLPRIPAVAPPQ 139
           PPPEP   VE+ LP+ P VA P+
Sbjct: 20  PPPEPAPVVEETLPQAPVVAEPR 42


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.138    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,917,102
Number of Sequences: 27539
Number of extensions: 148115
Number of successful extensions: 581
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 575
Number of HSP's gapped (non-prelim): 8
length of query: 309
length of database: 12,573,161
effective HSP length: 81
effective length of query: 228
effective length of database: 10,342,502
effective search space: 2358090456
effective search space used: 2358090456
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)