GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000520-TA|BGIBMGA000520-PA|IPR004145|Protein of unknown
function DUF243
         (309 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   3.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   7.8  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 117 VHVPPPEPVEQRLPRIPAVAP 137
           V++P P P   RL R P   P
Sbjct: 104 VYIPQPRPPHPRLRREPEAEP 124



 Score = 23.0 bits (47), Expect = 3.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 117 VHVPPPEPVEQRLPRIPAVAP 137
           V++P P P   RL R P   P
Sbjct: 130 VYIPQPRPPHPRLRREPEAEP 150


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 114 HIYVHVPPPEPVEQRLPRI 132
           H  V+ P   PV QRLP +
Sbjct: 363 HNVVYRPGENPVTQRLPAV 381


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.138    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,615
Number of Sequences: 429
Number of extensions: 1757
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 309
length of database: 140,377
effective HSP length: 58
effective length of query: 251
effective length of database: 115,495
effective search space: 28989245
effective search space used: 28989245
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 44 (21.8 bits)