Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000519-TA|BGIBMGA000519-PA|undefined
         (108 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31999| Best HMM Match : Utp14 (HMM E-Value=1.6)                     28   1.9  
SB_33634| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.5  
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)            25   9.9  

>SB_31999| Best HMM Match : Utp14 (HMM E-Value=1.6)
          Length = 836

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 17  VPETTFPQYGFPQSINLNGNMAQLRHVG 44
           +P+     YG+P S++  GN   L H+G
Sbjct: 678 MPDHRIDNYGYPTSLHSQGNNQWLNHMG 705


>SB_33634| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 75  DSPFNPERPPEGTSQRDNRYLVHYAHR 101
           +SP   ERP    S+RD  Y   YAHR
Sbjct: 3   ESPEKQERPSPAISRRDEAY--GYAHR 27


>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
          Length = 677

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 69  HKTKGQDSPFNPERPPE--GTSQRDNRYLVHYAHRNANW 105
           H TK Q + ++P RP     T  +   YL H     ANW
Sbjct: 353 HPTKIQANWYHPIRPRPIVATLTKTQAYLCHPTKTQANW 391


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.132    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,744,706
Number of Sequences: 59808
Number of extensions: 122605
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 147
Number of HSP's gapped (non-prelim): 3
length of query: 108
length of database: 16,821,457
effective HSP length: 72
effective length of query: 36
effective length of database: 12,515,281
effective search space: 450550116
effective search space used: 450550116
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 53 (25.4 bits)