GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000519-TA|BGIBMGA000519-PA|undefined
         (108 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    24   4.6  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    24   6.0  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    24   6.0  

>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 70  KTKGQDSPFNPERPPEGTSQRD 91
           K K   SP +P++P + +S RD
Sbjct: 144 KDKRSQSPHSPKKPVKNSSSRD 165


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 5   VAVSLKTGHQYNVPETTFPQYGFPQSI 31
           +A  L + H+YN  +  F    +P++I
Sbjct: 98  LAFQLLSSHEYNTDDVVFYDVDYPETI 124


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 68  RHKTKGQDSPFNPERPPEGTSQRDNRYLVHYAHRNANWALE 108
           RH+ K Q     PE+    T Q+D   L+  +H     A+E
Sbjct: 551 RHREKRQLRKEKPEKKNNSTKQKD---LITVSHNKGTTAIE 588


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.132    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 488,232
Number of Sequences: 5004
Number of extensions: 15352
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 3
length of query: 108
length of database: 2,362,478
effective HSP length: 64
effective length of query: 44
effective length of database: 2,042,222
effective search space: 89857768
effective search space used: 89857768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 48 (23.4 bits)