GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000519-TA|BGIBMGA000519-PA|undefined
         (108 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873...    27   4.1  
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28...    26   5.5  
03_02_0203 + 6370729-6370850,6371213-6371391,6371516-6371625,637...    25   9.6  

>01_06_1513 -
           37884198-37884485,37884966-37886951,37886976-37887305,
           37887397-37887471,37887543-37887734,37887922-37888173,
           37888248-37888803,37888881-37889088,37889624-37889736,
           37890029-37890060,37890545-37890619
          Length = 1368

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 69  HKTKGQDSPFNPERPPEGTSQRDN 92
           H+ +GQ +P  PE+ P+G  +  N
Sbjct: 808 HRLRGQQAPVLPEQKPDGEVRMSN 831


>02_01_0041 +
           279583-281622,281724-282047,282315-282443,282526-282648,
           282768-282923,283224-283349,283426-283560,283815-283942,
           284037-284148,284233-284547,284655-284771,284871-285166,
           285252-285783,287980-288082,288808-288881,288965-289062,
           289340-289380,289977-290032,290170-290244,290377-290469,
           290602-290850,290930-291002,291681-291766,291853-291938,
           292067-292142,292280-292347,292430-292496,292570-292665,
           292741-292843,293214-293309,293396-293466
          Length = 2047

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 2/33 (6%)

Query: 76  SPFNP--ERPPEGTSQRDNRYLVHYAHRNANWA 106
           SP  P  E PPEG S    +  VH   +   WA
Sbjct: 62  SPAPPPVEAPPEGASPESGKGAVHTTVKQVQWA 94


>03_02_0203 +
           6370729-6370850,6371213-6371391,6371516-6371625,
           6372721-6373575
          Length = 421

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 13  HQYNVPETTFPQYGFPQSINLN 34
           H + +P    P YG   SINLN
Sbjct: 225 HGHQLPTVELPSYGRTASINLN 246


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.132    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,179,432
Number of Sequences: 37544
Number of extensions: 100305
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95
Number of HSP's gapped (non-prelim): 3
length of query: 108
length of database: 14,793,348
effective HSP length: 72
effective length of query: 36
effective length of database: 12,090,180
effective search space: 435246480
effective search space used: 435246480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 53 (25.4 bits)