GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000519-TA|BGIBMGA000519-PA|undefined
         (108 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26710.1 68418.m03168 glutamate-tRNA ligase, putative / gluta...    26   6.2  
At2g03260.1 68415.m00279 EXS family protein / ERD1/XPR1/SYG1 fam...    26   6.2  

>At5g26710.1 68418.m03168 glutamate-tRNA ligase, putative /
          glutamyl-tRNA synthetase, putatuve / GluRS, putative
          identical to gi:3435196
          Length = 719

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 3  VVVAVSLKTGH---QYNVPETTFPQYGFPQSINLNGNMAQLRHVG 44
          V+VA+SL         +   TT P + F     LNG    LR+VG
Sbjct: 17 VIVALSLSASPVTIDSSAAATTVPSFVFSDGRKLNGATVLLRYVG 61


>At2g03260.1 68415.m00279 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 807

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 1   MLVVVAVSLKTGHQYNVPETTFP 23
           +L V+AVSL+T + Y V  T  P
Sbjct: 651 LLTVIAVSLRTAYGYEVKNTKNP 673


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.132    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,546,342
Number of Sequences: 28952
Number of extensions: 80639
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 2
length of query: 108
length of database: 12,070,560
effective HSP length: 71
effective length of query: 37
effective length of database: 10,014,968
effective search space: 370553816
effective search space used: 370553816
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 53 (25.4 bits)