Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000518-TA|BGIBMGA000518-PA|IPR001932|Protein phosphatase
2C-like, IPR000222|Protein phosphatase 2C
         (445 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    27   0.42 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   1.7  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    23   3.9  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 26.6 bits (56), Expect = 0.42
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 143 PHEGYNVPTALEQAIIKIDQDLSKEAVEPYKLNQVINPQTLSVALSGAVACVTHVDG-PN 201
           P   + +  A E+A   + +DLS + +  + + Q I+     V LS A A +T  +   N
Sbjct: 221 PPFAWKILKAAEEAGFGVSEDLSGDRINGFTVAQTISRN--GVRLSSARAFITPFENRSN 278

Query: 202 LHI 204
           LH+
Sbjct: 279 LHV 281


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 99  HKYIQQDPREALVDTFNNRVEILQELKILYERS 131
           H Y +Q PR+    T +   ++LQE +  Y  S
Sbjct: 329 HDYSRQFPRDLTTQTVSTTADVLQEEEEEYSPS 361


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 23.4 bits (48), Expect = 3.9
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 3/26 (11%)

Query: 224 IAKKITKE---HNSENFDELKRIWNE 246
           I KK TK+   H S+ + +LKR W +
Sbjct: 11  IVKKRTKKFIRHQSDRYSKLKRNWRK 36


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,778
Number of Sequences: 429
Number of extensions: 6373
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 445
length of database: 140,377
effective HSP length: 60
effective length of query: 385
effective length of database: 114,637
effective search space: 44135245
effective search space used: 44135245
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)