Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000517-TA|BGIBMGA000517-PA|IPR013069|BTB/POZ,
IPR000210|BTB
         (1812 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       27   0.89 
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    26   2.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   6.3  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    24   8.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    24   8.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    24   8.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    24   8.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    24   8.3  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 27.5 bits (58), Expect = 0.89
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 928  QEEVVCGDEINDSSDLFVKLSDLDKPVTRMDIDIPVTKKTLSASVSEDKARDSRMTRSIP 987
            ++ +V   E+N++ ++   +SDL +  +    D PV  + ++   S   A D+R  R   
Sbjct: 46   EQPIVAMFEVNNTPEILQLMSDLKQHQS----DDPVLSQIIANKQSGAAAPDARTQRVWS 101

Query: 988  DNNWTNQTLSVNSRS 1002
              N+TN  L   S++
Sbjct: 102  QYNFTNNVLVHRSQN 116


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 630 AQCSSINKDYDVTKKIKAHKFFEYSPIVSGGASVEDFPPQMPGSKTGSPSTKRKIE---- 685
           A  +S+   Y     +  H +  Y P  + G      P Q PG     P T+ ++     
Sbjct: 153 AAATSLPLHYPPPPPVYTHHYARYHPYPNFGVPPAGIPLQNPGLNLNPPVTQTQLPLNLG 212

Query: 686 -NIPIVSGGYIPERTEEVNQVTRSKVKLS 713
            + P      +P ++   +   +S V LS
Sbjct: 213 LDFPYQGKFEVPTKSSPRSSPVQSDVSLS 241


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 2/34 (5%)

Query: 126 LLEKELDEQDALSNAFISIK-KTQIEDKIENKAS 158
           +++KE+DE++ L N   S+K K + ED+ E++ S
Sbjct: 865 VVKKEVDEEERLEN-HTSVKIKREAEDRDEDERS 897


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 8.3
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 782 IDLASLPDPLPCKKSEDTDSLNEKKN 807
           +D+   P PL C K+       EKK+
Sbjct: 55  LDVTGTPPPLDCSKNSPEKESEEKKS 80


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 8.3
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 561 MTPITEDSLCTKAFVEPTQVEETVDDKQSNLDSISKET-ICLQETFMTSTPNNSIMSVKD 619
           +TP+ E  L  ++     + ++  D K  +LD I KE      ET    T  +S  +VK+
Sbjct: 497 VTPMYEGLLIDQSLGMNRRRDDEADVKTEDLDEIQKEKGDEYYETISNHTDASSAKAVKN 556

Query: 620 S 620
           S
Sbjct: 557 S 557


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 8.3
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 561 MTPITEDSLCTKAFVEPTQVEETVDDKQSNLDSISKET-ICLQETFMTSTPNNSIMSVKD 619
           +TP+ E  L  ++     + ++  D K  +LD I KE      ET    T  +S  +VK+
Sbjct: 497 VTPMYEGLLIDQSLGMNRRRDDEADVKTEDLDEIQKEKGDEYYETISNHTDASSAKAVKN 556

Query: 620 S 620
           S
Sbjct: 557 S 557


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 8.3
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 561 MTPITEDSLCTKAFVEPTQVEETVDDKQSNLDSISKET-ICLQETFMTSTPNNSIMSVKD 619
           +TP+ E  L  ++     + ++  D K  +LD I KE      ET    T  +S  +VK+
Sbjct: 497 VTPMYEGLLIDQSLGMNRRRDDEADVKTEDLDEIQKEKGDEYYETISNHTDASSAKAVKN 556

Query: 620 S 620
           S
Sbjct: 557 S 557


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 24.2 bits (50), Expect = 8.3
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 561 MTPITEDSLCTKAFVEPTQVEETVDDKQSNLDSISKET-ICLQETFMTSTPNNSIMSVKD 619
           +TP+ E  L  ++     + ++  D K  +LD I KE      ET    T  +S  +VK+
Sbjct: 497 VTPMYEGLLIDQSLGMNRRRDDEADVKTEDLDEIQKEKGDEYYETISNHTDASSAKAVKN 556

Query: 620 S 620
           S
Sbjct: 557 S 557


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.126    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 369,877
Number of Sequences: 317
Number of extensions: 14521
Number of successful extensions: 32
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 8
length of query: 1812
length of database: 114,650
effective HSP length: 67
effective length of query: 1745
effective length of database: 93,411
effective search space: 163002195
effective search space used: 163002195
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 50 (24.2 bits)