GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000517-TA|BGIBMGA000517-PA|IPR013069|BTB/POZ,
IPR000210|BTB
         (1812 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      32   0.037
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          31   0.086
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    26   2.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        26   3.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        26   3.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        26   3.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   5.6  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 32.3 bits (70), Expect = 0.037
 Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 3/100 (3%)

Query: 1114 DVVVEVSGKRIKAHKCILSSRCQFFAGILSGGWVESAGNVIALPSFSYNVVHFAMCHIYS 1173
            DV +   G+ +KAH+ +LS+   +F  +L          VI L   +++ +H  +  IY 
Sbjct: 33   DVTLACDGRSLKAHRVVLSACSPYFRELLKS--TPCKHPVIVLQDVAFSDLHALVEFIYH 90

Query: 1174 GLSAIPDTISILELATLADMLGLEGLKEAIMFTLKTKYCH 1213
            G   +    S+      A++L + GL +    T + +  H
Sbjct: 91   GEVNVHQR-SLSSFLKTAEVLRVSGLTQQADQTDRDELSH 129


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 31.1 bits (67), Expect = 0.086
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 2/106 (1%)

Query: 1096 QSRLGQDLLRMFLEEIAPDVVVEVSGKRIKAHKCILSSRCQFFAGILSGGWVESAGNVIA 1155
            QS +     ++   E   DV +  +   +KAHK +LS+   +F  +L     +    +I 
Sbjct: 19   QSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHP-TIIM 77

Query: 1156 LPSFSYNVVHFAMCHIYSGLSAIPDTISILELATLADMLGLEGLKE 1201
                 +N + F +  +Y G   +     +  L   AD L ++GL E
Sbjct: 78   PQDVCFNDLKFIIEFVYRGEIDVSQA-ELQSLLKTADQLKIKGLCE 122


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 662 SVEDFPPQMPGSKTGSPSTKRKIENIPIVSGGYIPER--TEEVNQVTR 707
           SV D+P ++ GS  G  S   + +NI      +IP    T+  N V R
Sbjct: 394 SVSDYPLELKGSPDGFESVTSQYKNIREDDARHIPHASVTDSENTVPR 441


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 681 KRKIENIPIVSGGYIPERTEEVNQVTRSKVKLSSSSAWVVDMSGGAKLNSETSNVSQTSK 740
           K    ++ +VSGG +   T+E N V        S S    +    A + S++S++++   
Sbjct: 431 KENNADLTVVSGGSVLRATKEYNTVPIIAESYGSGSTNFNERPAVAVV-SKSSSINKLED 489

Query: 741 RPNEKTCEN 749
             N+K+C +
Sbjct: 490 LRNKKSCHS 498


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 681 KRKIENIPIVSGGYIPERTEEVNQVTRSKVKLSSSSAWVVDMSGGAKLNSETSNVSQTSK 740
           K    ++ +VSGG +   T+E N V        S S    +    A + S++S++++   
Sbjct: 431 KENNADLTVVSGGSVLRATKEYNTVPIIAESYGSGSTNFNERPAVAVV-SKSSSINKLED 489

Query: 741 RPNEKTCEN 749
             N+K+C +
Sbjct: 490 LRNKKSCHS 498


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 681 KRKIENIPIVSGGYIPERTEEVNQVTRSKVKLSSSSAWVVDMSGGAKLNSETSNVSQTSK 740
           K    ++ +VSGG +   T+E N V        S S    +    A + S++S++++   
Sbjct: 431 KENNADLTVVSGGSVLRATKEYNTVPIIAESYGSGSTNFNERPAVAVV-SKSSSINKLED 489

Query: 741 RPNEKTCEN 749
             N+K+C +
Sbjct: 490 LRNKKSCHS 498


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 1339 APDAPPPAKQALMDCIAAAIEWAPPDE 1365
            AP+AP   K  +M   +  + W PP +
Sbjct: 1179 APEAPIAIKALVMSSESILVSWRPPSQ 1205


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.126    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 467,958
Number of Sequences: 429
Number of extensions: 18271
Number of successful extensions: 64
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 8
length of query: 1812
length of database: 140,377
effective HSP length: 68
effective length of query: 1744
effective length of database: 111,205
effective search space: 193941520
effective search space used: 193941520
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 50 (24.2 bits)