Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000516-TA|BGIBMGA000516-PA|IPR004088|KH, type 1,
IPR004087|KH
         (472 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   5.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   5.5  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   7.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   9.7  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 145 EVMQQEANNTNKGEICLKILAHN 167
           E +  E N+ NK E  LKI  H+
Sbjct: 237 EPLSGETNDPNKTEYTLKIYTHD 259


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 145 EVMQQEANNTNKGEICLKILAHN 167
           E +  E N+ NK E  LKI  H+
Sbjct: 237 EPLSGETNDPNKTEYTLKIYTHD 259


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 194 VSSINDINSFNLERIITVKGSIENMAKAESQISAKLRQSYEN 235
           VS    + SF +  I  +  +++++   ESQ S  LRQ Y+N
Sbjct: 53  VSLAGGLKSFKILPIEPL--AVDSVKIGESQGSVTLRQEYKN 92


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 158 EICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFN 204
           ++C K L H + +G        ++    Q+    +T SS  + NS N
Sbjct: 498 DLCTKFLMHKDSLGLSTATSTCSLAVAKQQNQVPLTSSSNVNNNSGN 544


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,674
Number of Sequences: 429
Number of extensions: 3146
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 4
length of query: 472
length of database: 140,377
effective HSP length: 60
effective length of query: 412
effective length of database: 114,637
effective search space: 47230444
effective search space used: 47230444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)