Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000516-TA|BGIBMGA000516-PA|IPR004088|KH, type 1,
IPR004087|KH
(472 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 57 6e-09
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 44 5e-05
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo... 28 3.2
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 4.3
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 27 7.5
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 7.5
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi... 26 9.9
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 26 9.9
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 56.8 bits (131), Expect = 6e-09
Identities = 74/310 (23%), Positives = 125/310 (40%), Gaps = 34/310 (10%)
Query: 81 LRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRK-DNVGSLEKAITIYGNPENCTNA 139
LR L+ + G IIG+ G + + + + V + NV ++ +TI G EN A
Sbjct: 96 LRALLSTREAGIIIGKAGKNVAELRSTTNVKAGVTKAVPNVH--DRVLTISGPLENVVRA 153
Query: 140 CKRILEVMQQEANNTN------KGEICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKIT 193
+ I+++ + + N + L++L ++L+G IIG+ G IK I + ++
Sbjct: 154 YRFIIDIFAKNSTNPDGTPSDANTPRKLRLLIAHSLMGSIIGRNGLRIKLIQDKCSCRMI 213
Query: 194 VSSINDINSFNLERIITVKGSIENMAKAESQISAKLRQSYENDLQVL--APQSIM---FP 248
S D+ + ER + + G+++N+ A +I L +E + P S + P
Sbjct: 214 AS--KDMLPQSTERTVEIHGTVDNLHAAIWEIGKCLIDDWERGAGTVFYNPVSRLTQPLP 271
Query: 249 GL---------HPMAMMSTGRGFCGXXXXXXXXXXXXXXXXXXXXXXXDSQETTYLYIPN 299
L P A ST G + T + IP
Sbjct: 272 SLASTASPQQVSPPAAPSTTSG--EAIPENFVSYGAQVFPATQMPFLQQPKVTQNISIPA 329
Query: 300 NAVGAIIGTKGSHIRNIIRFSNASVKIAPLXXXXXXXXXXXXXXRKVTIVGSPEAQWKAQ 359
+ VG IIG GS I I R S + + IA R TI G+ E KA
Sbjct: 330 DMVGCIIGRGGSKISEIRRTSGSKISIA-------KEPHDETGERMFTITGTHEENEKAL 382
Query: 360 YLIFEKMREE 369
+L+++++ E
Sbjct: 383 FLLYQQLEME 392
Score = 33.5 bits (73), Expect = 0.065
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 158 EICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKITVS-SINDINSFNLERIITVKGSIE 216
++ L+ L G IIGK G + + T+ K V+ ++ +++ +R++T+ G +E
Sbjct: 93 QLTLRALLSTREAGIIIGKAGKNVAELRSTTNVKAGVTKAVPNVH----DRVLTISGPLE 148
Query: 217 NMAKA 221
N+ +A
Sbjct: 149 NVVRA 153
Score = 32.3 bits (70), Expect = 0.15
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 384 IVVASSQVGRIIGKGGQNVRELQRVTGSLIKL 415
I + + VG IIG+GG + E++R +GS I +
Sbjct: 325 ISIPADMVGCIIGRGGSKISEIRRTSGSKISI 356
Score = 29.5 bits (63), Expect = 1.1
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 379 RLIVEIVVASSQVGRIIGKGGQNVRELQRVTGSLIKLXXXXXXXXXXXXXHETTVHIVGP 438
+L + ++++ + G IIGK G+NV EL+ T +K H+ + I GP
Sbjct: 93 QLTLRALLSTREAGIIIGKAGKNVAELRSTTN--VK----AGVTKAVPNVHDRVLTISGP 146
Query: 439 FYSVQSAQRRI 449
+V A R I
Sbjct: 147 LENVVRAYRFI 157
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 44.0 bits (99), Expect = 5e-05
Identities = 37/172 (21%), Positives = 79/172 (45%), Gaps = 15/172 (8%)
Query: 78 DFPLRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNVGS-----LEKA-----I 127
D LR+ + +D +IG G +R + ++ RV R+D+ + L K +
Sbjct: 796 DTILRVNIPNDFHRQLIGSNGKYVRRLEEKFSVRVRFPREDDSSNSTGNELMKPTSPDEV 855
Query: 128 TIYGNPENCTNACKRILEVMQQEANNTNKGEICLKILAHNNLIGRIIGKGGNTIKRIMQE 187
I G ++ A + +LE+ + E + I + A + R++G+ G+T++ I +
Sbjct: 856 VIRGGKKSVAAAKQELLELYEYEKSIAYTSTIDIPSKA----VSRVVGRNGSTVENIRTQ 911
Query: 188 TDTKITVSSINDINSFNLERIITVKGSIENMAKAESQISAKLRQSYENDLQV 239
D KI + ++ + + + K +EN K S I+ +++ E +++
Sbjct: 912 FDVKIDIGDVSTEETTPVS-VRGAKADVENAIKEISAIAEEVKNLVEKVIKI 962
Score = 41.1 bits (92), Expect = 3e-04
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 110 ARVDVHRKDNVGSLEKAITIYGNPENCTNACKRILEVMQQEANNTNKGEICLKILAHNNL 169
AR+ N ++ + G+ E R+LE++++ N + KI
Sbjct: 995 ARLISFSNGNSEEERNSVVLRGDKEIVEALETRLLEIVEELKNQVEE-----KIEVPQRC 1049
Query: 170 IGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITVKGSIENMAKAESQISAKL 229
I IIG+ G+T + I ++T T + + ++ D IT+ GS EN KA+ I K+
Sbjct: 1050 ISSIIGRMGSTRRDIERKTSTMLNIPNVLDPEE---TVTITIVGSPENCEKAKEMIQEKV 1106
Query: 230 RQSYENDLQV 239
Y + V
Sbjct: 1107 ASQYTQMITV 1116
Score = 37.1 bits (82), Expect = 0.005
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 118 DNVGSLEKAITIYGNPENCTNACKRILEVMQQEANNTNKGEICLKILA-HNNLIGRIIGK 176
D GS + G+ EN A + + ++Q N C+ L NL RIIG
Sbjct: 1172 DYTGSSSSEWAVRGHKENVEKAIASLEKSIKQVMEN------CIAYLGIPTNLHRRIIGS 1225
Query: 177 GGNTIKRIMQETDTKITVSSINDINSFNLERIITVKGSIENMAKAESQISAKLRQSYEND 236
GG+ I +I + KI D+ + I+ V+GS + KA+ I +L+++ +
Sbjct: 1226 GGSIINKIRKIAQVKI------DVPRTPGDEIVVVQGSRAGVVKAKDLIFERLQENQNQE 1279
Score = 35.9 bits (79), Expect = 0.012
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 82 RLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNVGSLEK--AITIYGNPENCTNA 139
++ V + +IIGR GST R I +++ +++ NV E+ ITI G+PENC A
Sbjct: 1042 KIEVPQRCISSIIGRMGSTRRDIERKTSTMLNI---PNVLDPEETVTITIVGSPENCEKA 1098
Query: 140 CKRILE 145
+ I E
Sbjct: 1099 KEMIQE 1104
Score = 30.3 bits (65), Expect = 0.61
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 297 IPNNAVGAIIGTKGSHIRNIIRFSNASVKIAPLXXXXXXXXXXXXXXRKVTIVGSPEAQW 356
+P + +IIG GS R+I R ++ + I + +TIVGSPE
Sbjct: 1045 VPQRCISSIIGRMGSTRRDIERKTSTMLNIPNVLDPEETVT--------ITIVGSPENCE 1096
Query: 357 KAQYLIFEKMREE 369
KA+ +I EK+ +
Sbjct: 1097 KAKEMIQEKVASQ 1109
Score = 29.9 bits (64), Expect = 0.80
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 169 LIGRIIGKGGNTIKRIMQETDTKITVSSIND 199
++G IIG G +K IM T T+I + N+
Sbjct: 235 VVGAIIGTNGQNLKSIMDRTSTRIQIPKRNN 265
Score = 29.1 bits (62), Expect = 1.4
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 89 MVGAIIGRQGSTIRLITQQSRARVDVHRKDNVGSLEKAITIYGNPENCTNACKRILEVMQ 148
+VGAIIG G ++ I ++ R+ + +++N + ++ PE N+ L+ ++
Sbjct: 235 VVGAIIGTNGQNLKSIMDRTSTRIQIPKRNNTAN--ESSDDAKKPEKEENSAASTLDDLE 292
Query: 149 QEANNTN---KGEICLKILAHNNLIGRIIGKGGNTIKRI 184
+ T +G+ LA ++ I + NT RI
Sbjct: 293 PQYEMTTITIEGDFEGVELAQKDIEAIINERTSNTTVRI 331
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 290 QETTYLYIPNNAVGAIIGTKGSHIRNIIRFSNASVKI 326
+ET + P VGAIIGT G ++++I+ ++ ++I
Sbjct: 224 RETKTMPCPVFVVGAIIGTNGQNLKSIMDRTSTRIQI 260
>SPBC11C11.02 |imp2||contractile ring protein
Imp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 670
Score = 27.9 bits (59), Expect = 3.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 206 ERIITVKGSIENMAKAESQISAKLRQSYEN 235
E + +K ++NMAK+ QIS L+ EN
Sbjct: 83 ESVQVMKAEVDNMAKSHLQISQLLQDDVEN 112
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.5 bits (58), Expect = 4.3
Identities = 16/69 (23%), Positives = 32/69 (46%)
Query: 148 QQEANNTNKGEICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLER 207
++ A K + +K N IG +IG G+T+K + ++ KI + +
Sbjct: 181 RRPAKTQEKVYVPVKDYPEINFIGLLIGPRGHTLKDMEAKSGAKIAIRGKGSVKEGKGRS 240
Query: 208 IITVKGSIE 216
+V+G++E
Sbjct: 241 DPSVRGNME 249
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 26.6 bits (56), Expect = 7.5
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 184 IMQETDTKITVSSINDINSFNLERI 208
++Q TDT TV ++N+I +LER+
Sbjct: 831 LVQLTDTPFTVITLNEIEIAHLERV 855
>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 26.6 bits (56), Expect = 7.5
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 166 HNNLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITVKGSIENMAKAESQI 225
HN L+ K N K++ + + S+ ++S ++ +K IE+M + ++
Sbjct: 33 HNKLL-ICKAKKENLEKKLAYQMMYSKLLKSLPKLSSLEENKLTKLKAPIEDMENTKKEL 91
Query: 226 SAKLRQSYENDLQVL 240
+QS E +L+ L
Sbjct: 92 EEIRKQSTETELRYL 106
>SPAC17A5.09c |||protein phosphatase regulatory subunit
Glc9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 26.2 bits (55), Expect = 9.9
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 206 ERIITVKGSIENMAKAESQISAKLR 230
ERI ++ EN++KAE Q SAK++
Sbjct: 53 ERIRRLRWDEENLSKAEQQKSAKMK 77
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 9.9
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 92 AIIGRQGSTIRLITQQSRARVDV 114
AI+G QG+ ++ I Q++R RV +
Sbjct: 308 AIVGPQGAYVKHIQQETRTRVQI 330
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.135 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,548,034
Number of Sequences: 5004
Number of extensions: 51324
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 31
length of query: 472
length of database: 2,362,478
effective HSP length: 75
effective length of query: 397
effective length of database: 1,987,178
effective search space: 788909666
effective search space used: 788909666
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)
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