GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000516-TA|BGIBMGA000516-PA|IPR004088|KH, type 1,
IPR004087|KH
         (472 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl s...    27   0.83 
DQ974164-1|ABJ52804.1|  410|Anopheles gambiae serpin 4C protein.       24   7.7  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    24   7.7  

>AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl
           symporter protein.
          Length = 1127

 Score = 27.5 bits (58), Expect = 0.83
 Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 177 GGNTIKRIMQETDTKITVSSINDINSFNLERIITVKGSIENMAKAESQISA 227
           G +T+K I +   T +   S ND+ S N  ++ ++ GS +++++  SQ S+
Sbjct: 829 GEDTVKFISEYPRTLVANDSTNDLLSHN--KVSSLHGSCDSLSRNVSQASS 877


>DQ974164-1|ABJ52804.1|  410|Anopheles gambiae serpin 4C protein.
          Length = 410

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 179 NTIKRIMQETDTKITVSSINDINSFNLERIITV 211
           N+ ++++Q   +KIT   +NDI +    + +TV
Sbjct: 190 NSTRQLVQSMQSKITAERVNDIVTKMKMKSVTV 222


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1201

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 3/28 (10%)

Query: 132  NPENCTNAC---KRILEVMQQEANNTNK 156
            +PEN +N C   KRI   +QQ+ + T +
Sbjct: 1059 SPENWSNVCEATKRITSALQQDWDETRR 1086


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.135    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 351,852
Number of Sequences: 2123
Number of extensions: 10714
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 3
length of query: 472
length of database: 516,269
effective HSP length: 66
effective length of query: 406
effective length of database: 376,151
effective search space: 152717306
effective search space used: 152717306
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)