Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000516-TA|BGIBMGA000516-PA|IPR004088|KH, type 1,
IPR004087|KH
(472 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g04430.2 68418.m00438 KH domain-containing protein NOVA, puta... 88 1e-17
At5g04430.1 68418.m00437 KH domain-containing protein NOVA, puta... 81 2e-15
At5g46190.1 68418.m05681 KH domain-containing protein strong sim... 67 2e-11
At5g15270.2 68418.m01789 KH domain-containing protein various pr... 62 8e-10
At5g15270.1 68418.m01788 KH domain-containing protein various pr... 62 8e-10
At3g04610.1 68416.m00493 KH domain-containing protein similar pu... 61 1e-09
At1g51580.1 68414.m05806 KH domain-containing protein 59 5e-09
At4g18375.2 68417.m02727 KH domain-containing protein contains s... 56 4e-08
At4g18375.1 68417.m02726 KH domain-containing protein contains s... 55 1e-07
At2g25970.1 68415.m03117 KH domain-containing protein 54 2e-07
At1g14170.1 68414.m01675 KH domain-containing protein location o... 50 3e-06
At4g26000.1 68417.m03745 KH domain-containing protein single-str... 49 6e-06
At5g64390.2 68418.m08088 KH domain-containing RNA-binding protei... 47 2e-05
At5g64390.1 68418.m08089 KH domain-containing RNA-binding protei... 47 2e-05
At2g22600.1 68415.m02679 KH domain-containing protein 43 5e-04
At4g10070.1 68417.m01647 KH domain-containing protein DNA-direct... 40 0.005
At1g33680.1 68414.m04166 KH domain-containing protein similar to... 38 0.014
At5g53060.1 68418.m06592 KH domain-containing protein 38 0.019
At3g12130.1 68416.m01509 KH domain-containing protein / zinc fin... 35 0.10
At2g03110.1 68415.m00264 KH domain-containing protein 35 0.13
At5g56140.1 68418.m07003 KH domain-containing protein 34 0.23
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin... 34 0.23
At4g26480.1 68417.m03810 KH domain-containing protein qkI-7, Mus... 33 0.54
At5g51300.2 68418.m06360 splicing factor-related contains simila... 32 0.72
At5g51300.1 68418.m06359 splicing factor-related contains simila... 32 0.72
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 31 1.7
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 31 1.7
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 30 2.9
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 30 2.9
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 30 2.9
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 30 2.9
At3g08620.1 68416.m01001 KH domain-containing protein 30 3.8
At1g09660.2 68414.m01085 KH domain-containing quaking protein, p... 30 3.8
At1g09660.1 68414.m01084 KH domain-containing quaking protein, p... 30 3.8
At4g32820.1 68417.m04668 expressed protein ; expression supporte... 29 8.8
At1g26110.1 68414.m03186 expressed protein 29 8.8
At1g12790.1 68414.m01485 expressed protein 29 8.8
>At5g04430.2 68418.m00438 KH domain-containing protein NOVA,
putative astrocytic NOVA-like RNA-binding protein, Homo
sapiens, U70477
Length = 334
Score = 88.2 bits (209), Expect = 1e-17
Identities = 72/297 (24%), Positives = 132/297 (44%), Gaps = 19/297 (6%)
Query: 81 LRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNV--GSLEKAITIYGNPENCTN 138
+R LV + G++IG+ GSTI +S AR+ + R G+ ++ I I G+ + N
Sbjct: 37 IRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVN 96
Query: 139 ACKRILEVMQQEANNTNKGEI----CLKILAHNNLIGRIIGKGGNTIKRIMQETDTKITV 194
+ IL+ + E + + E+ ++++ N+ G IIGKGG TIK ++E+ I +
Sbjct: 97 GLELILDKLHSELHAEDGNEVEPRRRIRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKI 156
Query: 195 SSINDINSFNLERIITVKGSIENMAKAESQISAKLRQSYENDLQVLAPQS---IMFPGLH 251
S +++ +R++T+ G+ E +A I AKL + V +P S + + G H
Sbjct: 157 SPLDNTFYGLSDRLVTLSGTFEEQMRAIDLILAKLTEDDHYSQNVHSPYSYAGLFYSGFH 216
Query: 252 --PMAMMSTGRGFCGXXXXXXXXXXXXXXXXXXXXXXXDSQETTYLYIPNNAVGAIIGTK 309
P A G ++ T + + + +G ++G
Sbjct: 217 GPPYAYALPSVATAG---YNSVNYAPNGSGGKYQNHKEEASTTVTIGVADEHIGLVLGRG 273
Query: 310 GSHIRNIIRFSNASVKIAPLXXXXXXXXXXXXXXRKVTIVGSPEAQWKAQYLIFEKM 366
G +I I + + A +KI+ RKV+I G A +A+ +I +K+
Sbjct: 274 GRNIMEITQMTGARIKIS-----DRGDFMSGTTDRKVSITGPQRAIQQAETMIKQKV 325
Score = 44.4 bits (100), Expect = 2e-04
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 295 LYIPNNAVGAIIGTKGSHIRNIIRFSNASVKIAPLXXXXXXXXXXXXXXRKVTIVGSPEA 354
L +PN++ G IIG G+ I++ I S A +KI+PL R VT+ G+ E
Sbjct: 125 LVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPL-----DNTFYGLSDRLVTLSGTFEE 179
Query: 355 QWKAQYLIFEKMREEGFMS 373
Q +A LI K+ E+ S
Sbjct: 180 QMRAIDLILAKLTEDDHYS 198
Score = 44.0 bits (99), Expect = 2e-04
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 371 FMSGSDDVRLIVEIVVASSQVGRIIGKGGQNVRELQRVTGSLIKLXXXXXXXXXXXXXHE 430
+ + ++ V I VA +G ++G+GG+N+ E+ ++TG+ IK+ +
Sbjct: 246 YQNHKEEASTTVTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTT---D 302
Query: 431 TTVHIVGPFYSVQSAQRRIRAMV 453
V I GP ++Q A+ I+ V
Sbjct: 303 RKVSITGPQRAIQQAETMIKQKV 325
Score = 41.1 bits (92), Expect = 0.002
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 152 NNTNKGEICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITV 211
N+ + + I + IG ++G+GG I I Q T +I +S D S +R +++
Sbjct: 248 NHKEEASTTVTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSI 307
Query: 212 KGSIENMAKAESQISAKLRQSYE 234
G + +AE+ I K+ + E
Sbjct: 308 TGPQRAIQQAETMIKQKVDSATE 330
Score = 38.7 bits (86), Expect = 0.008
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Query: 297 IPNNAVGAIIGTKGSHIRNIIRFSNASVKIAPLXXXXXXXXXXXXXXRKVTIVGSPEAQW 356
+ N A G++IG GS I S A ++++ R + I GS +
Sbjct: 41 VSNAAAGSVIGKGGSTITEFQAKSGARIQLS-----RNQEFFPGTTDRIIMISGSIKEVV 95
Query: 357 KAQYLIFEKMREEGFMSGSDDV--RLIVEIVVASSQVGRIIGKGGQNVRELQRVTGSLIK 414
LI +K+ E ++V R + +VV +S G IIGKGG ++ + + IK
Sbjct: 96 NGLELILDKLHSELHAEDGNEVEPRRRIRLVVPNSSCGGIIGKGGATIKSFIEESKAGIK 155
Query: 415 L 415
+
Sbjct: 156 I 156
Score = 31.9 bits (69), Expect = 0.95
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 382 VEIVVASSQVGRIIGKGGQNVRELQRVTGSLIKL 415
+ +V+++ G +IGKGG + E Q +G+ I+L
Sbjct: 37 IRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQL 70
>At5g04430.1 68418.m00437 KH domain-containing protein NOVA,
putative astrocytic NOVA-like RNA-binding protein, Homo
sapiens, U70477
Length = 313
Score = 81.0 bits (191), Expect = 2e-15
Identities = 70/292 (23%), Positives = 130/292 (44%), Gaps = 30/292 (10%)
Query: 81 LRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNV--GSLEKAITIYGNPENCTN 138
+R LV + G++IG+ GSTI +S AR+ + R G+ ++ I I G+ + N
Sbjct: 37 IRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVN 96
Query: 139 ACKRILEVMQQEANNTNKGEI----CLKILAHNNLIGRIIGKGGNTIKRIMQETDTKITV 194
+ IL+ + E + + E+ ++++ N+ G IIGKGG TIK ++E+ I +
Sbjct: 97 GLELILDKLHSELHAEDGNEVEPRRRIRLVVPNSSCGGIIGKGGATIKSFIEESKAGIKI 156
Query: 195 SSINDINSFNLERIITVKGSIENMAKAESQISAKLRQSYENDLQVLAPQSIMFPGLHPMA 254
S +++ +R++T+ G+ E +A I AKL + V +P S G + +
Sbjct: 157 SPLDNTFYGLSDRLVTLSGTFEEQMRAIDLILAKLTEDDHYSQNVHSPYSYA-AGYNSVN 215
Query: 255 MMSTGRGFCGXXXXXXXXXXXXXXXXXXXXXXXDSQETTYLYIPNNAVGAIIGTKGSHIR 314
G G ++ T + + + +G ++G G +I
Sbjct: 216 YAPNGSG------------------GKYQNHKEEASTTVTIGVADEHIGLVLGRGGRNIM 257
Query: 315 NIIRFSNASVKIAPLXXXXXXXXXXXXXXRKVTIVGSPEAQWKAQYLIFEKM 366
I + + A +KI+ RKV+I G A +A+ +I +K+
Sbjct: 258 EITQMTGARIKIS-----DRGDFMSGTTDRKVSITGPQRAIQQAETMIKQKV 304
Score = 44.4 bits (100), Expect = 2e-04
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 295 LYIPNNAVGAIIGTKGSHIRNIIRFSNASVKIAPLXXXXXXXXXXXXXXRKVTIVGSPEA 354
L +PN++ G IIG G+ I++ I S A +KI+PL R VT+ G+ E
Sbjct: 125 LVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPL-----DNTFYGLSDRLVTLSGTFEE 179
Query: 355 QWKAQYLIFEKMREEGFMS 373
Q +A LI K+ E+ S
Sbjct: 180 QMRAIDLILAKLTEDDHYS 198
Score = 44.0 bits (99), Expect = 2e-04
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 371 FMSGSDDVRLIVEIVVASSQVGRIIGKGGQNVRELQRVTGSLIKLXXXXXXXXXXXXXHE 430
+ + ++ V I VA +G ++G+GG+N+ E+ ++TG+ IK+ +
Sbjct: 225 YQNHKEEASTTVTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTT---D 281
Query: 431 TTVHIVGPFYSVQSAQRRIRAMV 453
V I GP ++Q A+ I+ V
Sbjct: 282 RKVSITGPQRAIQQAETMIKQKV 304
Score = 41.1 bits (92), Expect = 0.002
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 152 NNTNKGEICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITV 211
N+ + + I + IG ++G+GG I I Q T +I +S D S +R +++
Sbjct: 227 NHKEEASTTVTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSI 286
Query: 212 KGSIENMAKAESQISAKLRQSYE 234
G + +AE+ I K+ + E
Sbjct: 287 TGPQRAIQQAETMIKQKVDSATE 309
Score = 38.7 bits (86), Expect = 0.008
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Query: 297 IPNNAVGAIIGTKGSHIRNIIRFSNASVKIAPLXXXXXXXXXXXXXXRKVTIVGSPEAQW 356
+ N A G++IG GS I S A ++++ R + I GS +
Sbjct: 41 VSNAAAGSVIGKGGSTITEFQAKSGARIQLS-----RNQEFFPGTTDRIIMISGSIKEVV 95
Query: 357 KAQYLIFEKMREEGFMSGSDDV--RLIVEIVVASSQVGRIIGKGGQNVRELQRVTGSLIK 414
LI +K+ E ++V R + +VV +S G IIGKGG ++ + + IK
Sbjct: 96 NGLELILDKLHSELHAEDGNEVEPRRRIRLVVPNSSCGGIIGKGGATIKSFIEESKAGIK 155
Query: 415 L 415
+
Sbjct: 156 I 156
Score = 31.9 bits (69), Expect = 0.95
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 382 VEIVVASSQVGRIIGKGGQNVRELQRVTGSLIKL 415
+ +V+++ G +IGKGG + E Q +G+ I+L
Sbjct: 37 IRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQL 70
>At5g46190.1 68418.m05681 KH domain-containing protein strong
similarity to unknown protein (pir||T04533)
Length = 644
Score = 67.3 bits (157), Expect = 2e-11
Identities = 40/167 (23%), Positives = 86/167 (51%), Gaps = 4/167 (2%)
Query: 74 SRPTDFPLRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVH--RKDNVGSLEKAITIYG 131
SR ++++ S +G +IG+ G TI+ I Q S + ++V+ R ++ +T
Sbjct: 312 SRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATE 371
Query: 132 NPENCTNACKRILEVMQQEANNTNKGEICLKILAHNNLIGRIIGKGGNTIKRIMQETDTK 191
+P++ + + ++Q++ N+ ++ ++ +++L + +IG IIGK G+ I I + T
Sbjct: 372 SPDDLKSMAVEAVLLLQEKINDEDEDKVKMQLLVSSKVIGCIIGKSGSIISEIRKRTKAD 431
Query: 192 ITVSSINDIN--SFNLERIITVKGSIENMAKAESQISAKLRQSYEND 236
I +S N+ + + ++ + G + N+ A QI +LR D
Sbjct: 432 IHISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRD 478
Score = 42.7 bits (96), Expect = 5e-04
Identities = 16/46 (34%), Positives = 33/46 (71%)
Query: 370 GFMSGSDDVRLIVEIVVASSQVGRIIGKGGQNVRELQRVTGSLIKL 415
GF S +L ++++ +SS++GR+IGKGG ++ +++ +GS I++
Sbjct: 307 GFGGSSRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEV 352
Score = 38.7 bits (86), Expect = 0.008
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 82 RLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNVGSLEKAITIY 130
R+L S ++G++IG+ G I LI Q++RAR+ V G E+ ITI+
Sbjct: 47 RILCPSGVMGSVIGKSGKVINLIRQETRARIKV-VDPFPGCSERVITIF 94
Score = 38.7 bits (86), Expect = 0.008
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 144 LEVMQQEANNTNKGEICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKITVS 195
L V+ ++ ++ +K++ ++ IGR+IGKGG TIK I Q + + I V+
Sbjct: 302 LPVVHGFGGSSRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVN 353
Score = 36.7 bits (81), Expect = 0.033
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 132 NPENCTNACKRI-LEVMQQEANNTNKGEICLKILAHNNLIGRIIGKGGNTIKRIMQETDT 190
N +N N +R+ E +++ +N + + +IL + ++G +IGK G I I QET
Sbjct: 16 NNDNNRNQRRRLSYESEEKKIDNKDDLVVVYRILCPSGVMGSVIGKSGKVINLIRQETRA 75
Query: 191 KITVSSINDINSFNLERIITVKGSI 215
+I V ++ + ER+IT+ S+
Sbjct: 76 RIKV--VDPFPGCS-ERVITIFCSV 97
Score = 34.7 bits (76), Expect = 0.13
Identities = 10/34 (29%), Positives = 28/34 (82%)
Query: 382 VEIVVASSQVGRIIGKGGQNVRELQRVTGSLIKL 415
+E+ + ++ VG+++G+GG N+ ++R++G++I++
Sbjct: 576 MEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEI 609
Score = 33.1 bits (72), Expect = 0.41
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 290 QETTY-LYIPNNAVGAIIGTKGSHIRNIIRFSNASVKIA 327
Q TT + IP NAVG ++G G ++ NI R S A ++I+
Sbjct: 572 QSTTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEIS 610
Score = 32.7 bits (71), Expect = 0.54
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 82 RLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKD 118
RLLV S +IG+ GS I+ I ++RA V V KD
Sbjct: 153 RLLVPSSQCSIVIGKSGSIIKNIRGRTRANVKVVSKD 189
Score = 30.7 bits (66), Expect = 2.2
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 368 EEGFMSGSDDVRLIVEIVVASSQVGRIIGKGGQNVRELQRVTGSLIKL 415
EE + DD+ ++ I+ S +G +IGK G+ + +++ T + IK+
Sbjct: 32 EEKKIDNKDDLVVVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKV 79
Score = 29.5 bits (63), Expect = 5.0
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 299 NNAVGAIIGTKGSHIRNIIRFSNASVKIAPLXXXXXXXXXXXXXXRKVTIVGSPE----A 354
++ +G +IG G I+ I + S + +++ VT SP+
Sbjct: 325 SSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVIT-----VTATESPDDLKSM 379
Query: 355 QWKAQYLIFEKMREEGFMSGSDDVRLIVEIVVASSQVGRIIGKGGQNVRELQRVT 409
+A L+ EK+ +E D+ ++ ++++V+S +G IIGK G + E+++ T
Sbjct: 380 AVEAVLLLQEKINDE------DEDKVKMQLLVSSKVIGCIIGKSGSIISEIRKRT 428
Score = 29.1 bits (62), Expect = 6.7
Identities = 18/68 (26%), Positives = 29/68 (42%)
Query: 295 LYIPNNAVGAIIGTKGSHIRNIIRFSNASVKIAPLXXXXXXXXXXXXXXRKVTIVGSPEA 354
L +P++ +IG GS I+NI + A+VK+ V I G E+
Sbjct: 154 LLVPSSQCSIVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETES 213
Query: 355 QWKAQYLI 362
KA + +
Sbjct: 214 VKKALFAV 221
Score = 29.1 bits (62), Expect = 6.7
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 168 NLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITVKGSIENMAKAESQISA 227
N +G+++G+GG + I + + I +S D + + R+ + G+ E AE+ A
Sbjct: 583 NAVGKVMGRGGGNLDNIRRISGAMIEIS---DSKNSHGGRVALISGTSEQKRTAENLFQA 639
>At5g15270.2 68418.m01789 KH domain-containing protein various
predicted proteins, Arabidopsis thaliana and Oryza
sativa
Length = 548
Score = 62.1 bits (144), Expect = 8e-10
Identities = 82/367 (22%), Positives = 157/367 (42%), Gaps = 39/367 (10%)
Query: 78 DFPLRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNVGSLEKAITIYGNPENCT 137
D R L +G++IGR G ++ + +R+++ + G E+ ITIY +P + T
Sbjct: 49 DTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIP-GCDERVITIY-SPSDET 106
Query: 138 NAC---KRILEVMQQ--------------EANNTNKGE--ICLKILAHNNLIGRIIGKGG 178
NA +++L Q + ++ +GE + K+L ++ IG I+G+GG
Sbjct: 107 NAFGDGEKVLSPAQDALFRIHDRVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGG 166
Query: 179 NTIKRIMQETDTKITVSSIND--INSFNLERIITVKGSIENMAKAESQISAKLRQSYEND 236
++ I ET +I + + + + N + +I + G + + KA QI+++L ++
Sbjct: 167 QIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHENPSRS 226
Query: 237 LQVLAPQSIMFPGLHPMAMMSTGRGFCGXXXXXXXXXXXXXXXXXXXXX--XXDSQETTY 294
Q L S +P M+ + G G D T +
Sbjct: 227 -QNLLSSSGGYPAGSLMS-HAGGPRLVGLAPLMGSYGRDAGDWSRPLYQPPRNDPPATEF 284
Query: 295 ---LYIPNNAVGAIIGTKGSHIRNIIRFSNASVKIAPLXXXXXXXXXXXXXXRKVTIVGS 351
L P + ++IG G+ I + + + A++K+ S
Sbjct: 285 FIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYS 344
Query: 352 P--EAQWKAQYLIFEKM-REEGFMSGSDDVRLIVEIVVASSQVGRIIGKGGQNVRELQRV 408
P EA + Q +K+ R+ G +S ++V SS++G I+GKGG + E++R+
Sbjct: 345 PTIEAVMRLQPKCSDKVERDSGLVS------FTTRLLVPSSRIGCILGKGGAIITEMRRM 398
Query: 409 TGSLIKL 415
T + I++
Sbjct: 399 TKANIRI 405
Score = 45.2 bits (102), Expect = 9e-05
Identities = 40/164 (24%), Positives = 83/164 (50%), Gaps = 12/164 (7%)
Query: 77 TDFPLRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNVGSLEKAITIYGNPENC 136
T+F +RL+ + + ++IG+ G+ I + Q++RA + V G+ + ITI E
Sbjct: 282 TEFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGN-DCLITISAR-EVF 339
Query: 137 TNACKRILE-VMQQEANNTNKGE-------ICLKILAHNNLIGRIIGKGGNTIKRIMQET 188
+A +E VM+ + ++K E ++L ++ IG I+GKGG I + + T
Sbjct: 340 EDAYSPTIEAVMRLQPKCSDKVERDSGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMT 399
Query: 189 DTKITVSSINDIN--SFNLERIITVKGSIENMAKAESQISAKLR 230
I + ++ + + + ++ + G ++ +A QI+++LR
Sbjct: 400 KANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLR 443
>At5g15270.1 68418.m01788 KH domain-containing protein various
predicted proteins, Arabidopsis thaliana and Oryza
sativa
Length = 548
Score = 62.1 bits (144), Expect = 8e-10
Identities = 82/367 (22%), Positives = 157/367 (42%), Gaps = 39/367 (10%)
Query: 78 DFPLRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNVGSLEKAITIYGNPENCT 137
D R L +G++IGR G ++ + +R+++ + G E+ ITIY +P + T
Sbjct: 49 DTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIP-GCDERVITIY-SPSDET 106
Query: 138 NAC---KRILEVMQQ--------------EANNTNKGE--ICLKILAHNNLIGRIIGKGG 178
NA +++L Q + ++ +GE + K+L ++ IG I+G+GG
Sbjct: 107 NAFGDGEKVLSPAQDALFRIHDRVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGG 166
Query: 179 NTIKRIMQETDTKITVSSIND--INSFNLERIITVKGSIENMAKAESQISAKLRQSYEND 236
++ I ET +I + + + + N + +I + G + + KA QI+++L ++
Sbjct: 167 QIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHENPSRS 226
Query: 237 LQVLAPQSIMFPGLHPMAMMSTGRGFCGXXXXXXXXXXXXXXXXXXXXX--XXDSQETTY 294
Q L S +P M+ + G G D T +
Sbjct: 227 -QNLLSSSGGYPAGSLMS-HAGGPRLVGLAPLMGSYGRDAGDWSRPLYQPPRNDPPATEF 284
Query: 295 ---LYIPNNAVGAIIGTKGSHIRNIIRFSNASVKIAPLXXXXXXXXXXXXXXRKVTIVGS 351
L P + ++IG G+ I + + + A++K+ S
Sbjct: 285 FIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYS 344
Query: 352 P--EAQWKAQYLIFEKM-REEGFMSGSDDVRLIVEIVVASSQVGRIIGKGGQNVRELQRV 408
P EA + Q +K+ R+ G +S ++V SS++G I+GKGG + E++R+
Sbjct: 345 PTIEAVMRLQPKCSDKVERDSGLVS------FTTRLLVPSSRIGCILGKGGAIITEMRRM 398
Query: 409 TGSLIKL 415
T + I++
Sbjct: 399 TKANIRI 405
Score = 45.2 bits (102), Expect = 9e-05
Identities = 40/164 (24%), Positives = 83/164 (50%), Gaps = 12/164 (7%)
Query: 77 TDFPLRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNVGSLEKAITIYGNPENC 136
T+F +RL+ + + ++IG+ G+ I + Q++RA + V G+ + ITI E
Sbjct: 282 TEFFIRLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGN-DCLITISAR-EVF 339
Query: 137 TNACKRILE-VMQQEANNTNKGE-------ICLKILAHNNLIGRIIGKGGNTIKRIMQET 188
+A +E VM+ + ++K E ++L ++ IG I+GKGG I + + T
Sbjct: 340 EDAYSPTIEAVMRLQPKCSDKVERDSGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMT 399
Query: 189 DTKITVSSINDIN--SFNLERIITVKGSIENMAKAESQISAKLR 230
I + ++ + + + ++ + G ++ +A QI+++LR
Sbjct: 400 KANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLR 443
>At3g04610.1 68416.m00493 KH domain-containing protein similar
putative nucleic acid binding protein GB:CAB39665
[Arabidopsis thaliana]; Pfam HMM hit: KH domain family
of RNA binding proteins
Length = 577
Score = 61.3 bits (142), Expect = 1e-09
Identities = 45/169 (26%), Positives = 84/169 (49%), Gaps = 14/169 (8%)
Query: 76 PTDFPLRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNVGSLEKAITIYGNPE- 134
P + R+LV + VG+IIGR+G I+ I +++RAR+ + G+ E+A+ + G E
Sbjct: 184 PGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKI-LDGPPGTTERAVMVSGKEEP 242
Query: 135 ---------NCTNACKRILEVMQQEANNT-NKGEICLKILAHNNLIGRIIGKGGNTIKRI 184
RI++ + EA+ ++ ++L + G +IGK G T+K I
Sbjct: 243 ESSLPPSMDGLLRVHMRIVDGLDGEASQAPPPSKVSTRLLVPASQAGSLIGKQGGTVKAI 302
Query: 185 MQETDTKITVSSINDINSFNL--ERIITVKGSIENMAKAESQISAKLRQ 231
+ + + V D+ F L +R++ V G ++ +A I++ LR+
Sbjct: 303 QEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHLRK 351
Score = 42.3 bits (95), Expect = 7e-04
Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 291 ETTY-LYIPNNAVGAIIGTKGSHIRNIIRFSNASVKI--APLXXXXXXXXXXXXXXRKVT 347
ET + + +P VG+IIG KG I+ I+ + A +KI P + +
Sbjct: 186 ETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGKEEPESS 245
Query: 348 IVGSPEAQWKAQYLIFEKMREEGFMSGSDDVRLIVEIVVASSQVGRIIGKGGQNVRELQR 407
+ S + + I + + E + ++ ++V +SQ G +IGK G V+ +Q
Sbjct: 246 LPPSMDGLLRVHMRIVDGLDGEASQAPPPS-KVSTRLLVPASQAGSLIGKQGGTVKAIQE 304
Query: 408 VTGSLIKL 415
+ ++++
Sbjct: 305 ASACIVRV 312
Score = 29.9 bits (64), Expect = 3.8
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 290 QETTYLYIPNNAVGAIIGTKGSHIRNIIRFSNASVKI 326
Q T + IP + A+IGT GS+I R S A+V I
Sbjct: 457 QVTQQMQIPLSYADAVIGTSGSNISYTRRLSGATVTI 493
>At1g51580.1 68414.m05806 KH domain-containing protein
Length = 621
Score = 59.3 bits (137), Expect = 5e-09
Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 10/159 (6%)
Query: 82 RLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNVGSLEKAITIYGNPENCTN--- 138
RLL +D VG++IG+ G+ +R + +S A + V D E+ I + EN
Sbjct: 279 RLLCPADKVGSLIGKGGAVVRALQNESGASIKV--SDPTHDSEERIIVISARENLERRHS 336
Query: 139 -ACKRILEVMQQ--EANNTNKGEICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKITVS 195
A ++ V + E + ++L H+ IGR++GKGG+ I + + T I V
Sbjct: 337 LAQDGVMRVHNRIVEIGFEPSAAVVARLLVHSPYIGRLLGKGGHLISEMRRATGASIRVF 396
Query: 196 SINDINSFNL--ERIITVKGSIENMAKAESQISAKLRQS 232
+ + + + I+ V G+++ + A QI +LR++
Sbjct: 397 AKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLREA 435
Score = 49.2 bits (112), Expect = 6e-06
Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 6/151 (3%)
Query: 295 LYIPNNAVGAIIGTKGSHIRNIIRFSNASVKIAPLXXXXXXXXXXXXXXRKVTIVGSPEA 354
L P + VG++IG G+ +R + S AS+K++ + S
Sbjct: 280 LLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLERRHSLAQ 339
Query: 355 QWKAQYLIFEKMREEGFMSGSDDVRLIVEIVVASSQVGRIIGKGGQNVRELQRVTGSLIK 414
+ + ++ E GF ++ ++V S +GR++GKGG + E++R TG+ I+
Sbjct: 340 DGVMR--VHNRIVEIGF---EPSAAVVARLLVHSPYIGRLLGKGGHLISEMRRATGASIR 394
Query: 415 LXXXXXXXXXXXXXHETTVHIVGPFYSVQSA 445
+ H+ V ++G +VQ A
Sbjct: 395 V-FAKDQATKYESQHDEIVQVIGNLKTVQDA 424
Score = 35.1 bits (77), Expect = 0.10
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 384 IVVASSQVGRIIGKGGQNVRELQRVTGSLIKL 415
++ +++ G IIGKGG +R LQ VTGS I++
Sbjct: 23 LLCPATRTGAIIGKGGSVIRHLQSVTGSKIRV 54
Score = 34.7 bits (76), Expect = 0.13
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 158 EICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITVKGSIEN 217
E+ ++L + +G +IGKGG ++ + E+ I VS D + ERII + EN
Sbjct: 275 EVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVS---DPTHDSEERIIVISAR-EN 330
Query: 218 MAKAES 223
+ + S
Sbjct: 331 LERRHS 336
Score = 32.7 bits (71), Expect = 0.54
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 162 KILAHNNLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITV 211
++L G IIGKGG+ I+ + T +KI V I+DI + ER++ +
Sbjct: 22 RLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRV--IDDIPVPSEERVVLI 69
Score = 32.7 bits (71), Expect = 0.54
Identities = 20/88 (22%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 150 EANNTNKGE---ICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKITVSSINDIN--SFN 204
+ + +KGE +C +++ N + ++ KGG I++I +++ + +SS + I +F
Sbjct: 137 DGDELDKGESEGLC-RMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFP 195
Query: 205 LERIITVKGSIENMAKAESQISAKLRQS 232
+ +I + G ++ KA ++ L++S
Sbjct: 196 GDVVIQMNGKFSSVKKALLLVTNCLQES 223
Score = 30.3 bits (65), Expect = 2.9
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 82 RLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNVGSLEKAITIY---GNPENCTN 138
RLL + GAIIG+ GS IR + + +++ V V S E+ + I G ++ +N
Sbjct: 22 RLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLIIAPSGKKKDESN 81
Query: 139 ACKRILEVMQQEANNTNKGEIC 160
C E E KG C
Sbjct: 82 VCDS--ENPGSEEPKQEKGSEC 101
>At4g18375.2 68417.m02727 KH domain-containing protein contains
similarity to RNA-binding KH-domains PF:00013
Length = 606
Score = 56.4 bits (130), Expect = 4e-08
Identities = 58/273 (21%), Positives = 117/273 (42%), Gaps = 26/273 (9%)
Query: 74 SRPTDFPLRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVH-RKDNVGSLEKAITIYG- 131
SR + ++L + +IG+ GSTI+ I + S + ++V+ + G E I +
Sbjct: 307 SRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTAT 366
Query: 132 -NPENCTNACKRILEVMQQEANNTNKGEICLKILAHNNLIGRIIGKGGNTIKRIMQETDT 190
+P++ + + ++Q+ N+ + + +++L + +IG +IGK G+ I I + T+
Sbjct: 367 ESPDDMKSMAVEAVLLLQEYINDEDAENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNA 426
Query: 191 KITVSSINDINSFNLERIITVKGSIENMAKAESQISAKLRQSYENDLQVLAPQ------- 243
I +S + ++ V G + ++ A QI +LR+ D +A +
Sbjct: 427 NICIS------KGKKDDLVEVSGEVSSVRDALIQIVLRLREDVLGDKDSVATRKPPARTD 480
Query: 244 --SIMFPGLHP-------MAMMSTGRGFCGXXXXXXXXXXXXXXXXXXXXXXXDSQETTY 294
S + + M+ M++ GF G S
Sbjct: 481 NCSFLSGSSNAGYTLPSFMSSMASTSGFHGYGSFPAGDNVLGSTGPYSYGRLPSSSALEI 540
Query: 295 LYIPNNAVGAIIGTKGSHIRNIIRFSNASVKIA 327
L IP +A+ ++G G ++ NI R S A ++I+
Sbjct: 541 L-IPAHAMSKVMGKGGGNLENIRRISGAMIEIS 572
Score = 41.1 bits (92), Expect = 0.002
Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 32/176 (18%)
Query: 82 RLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNVGSLEKAITIY----------- 130
R+L D+VG +IG+ G I I ++A++ V + + G ++ ITIY
Sbjct: 39 RILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLH-GCSQRVITIYCSVKEKQEEIG 97
Query: 131 -----GNPENCT-NACKRILE--VMQQEANNT------NKGEICLKILAHNNLIGRIIGK 176
P C +A ++ + V E NNT + + C ++L + +IGK
Sbjct: 98 FTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNKEC-RLLVPFSQSSSLIGK 156
Query: 177 GGNTIKRIMQET--DTKITVSSIND---INSFNLERIITVKGSIENMAKAESQISA 227
G IKRI + T K+ ++D + + + ++ + G E++ +A +SA
Sbjct: 157 AGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSA 212
Score = 37.1 bits (82), Expect = 0.025
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 144 LEVMQQEANNTNKGEICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKITVS-SINDINS 202
L V ++ E+ K+L I R+IGKGG+TIKRI + + + I V+ S
Sbjct: 297 LPVTHGFGGSSRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGD 356
Query: 203 FNLERIITVKGSIENMAKAESQISAKLRQSYEND 236
I+T S ++M K+ + + L Q Y ND
Sbjct: 357 DECVIIVTATESPDDM-KSMAVEAVLLLQEYIND 389
Score = 33.9 bits (74), Expect = 0.23
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 370 GFMSGSDDVRLIVEIVVASSQVGRIIGKGGQNVRELQRVTGSLIKL 415
GF S L+ +++ + R+IGKGG ++ ++ +GS I++
Sbjct: 302 GFGGSSRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEV 347
Score = 32.7 bits (71), Expect = 0.54
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 82 RLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKD-----NVGSLE--KAITIYGNPE 134
RLLV ++IG+ G I+ I +++RA V V KD +V ++E + I G PE
Sbjct: 142 RLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPE 201
Query: 135 NCTNACKRILEVM 147
+ A + +M
Sbjct: 202 SVKQALFAVSAIM 214
Score = 31.9 bits (69), Expect = 0.95
Identities = 19/75 (25%), Positives = 32/75 (42%)
Query: 288 DSQETTYLYIPNNAVGAIIGTKGSHIRNIIRFSNASVKIAPLXXXXXXXXXXXXXXRKVT 347
D + L +P + ++IG G +I+ I R + ASVK+ V
Sbjct: 136 DDNKECRLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVV 195
Query: 348 IVGSPEAQWKAQYLI 362
I G PE+ +A + +
Sbjct: 196 ISGEPESVKQALFAV 210
Score = 31.5 bits (68), Expect = 1.2
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 161 LKILAHNNLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITVKGSIENMAK 220
L+IL + + +++GKGG ++ I + + I +S+ + + I + G++E M
Sbjct: 538 LEILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKTSHG---DHIALLSGTLEQMRC 594
Query: 221 AESQISA 227
AE+ + A
Sbjct: 595 AENLVQA 601
Score = 31.1 bits (67), Expect = 1.7
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 155 NKGEICL-KILAHNNLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITVKG 213
N+ E+ + +IL +++G +IGK G I I T KI V + ++ + +R+IT+
Sbjct: 31 NRDELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKV--FDQLHGCS-QRVITIYC 87
Query: 214 SIE 216
S++
Sbjct: 88 SVK 90
Score = 29.1 bits (62), Expect = 6.7
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 384 IVVASSQVGRIIGKGGQNVRELQRVTGSLIKL 415
++V SQ +IGK G+N++ ++R T + +K+
Sbjct: 143 LLVPFSQSSSLIGKAGENIKRIRRRTRASVKV 174
Score = 28.7 bits (61), Expect = 8.8
Identities = 11/43 (25%), Positives = 27/43 (62%)
Query: 371 FMSGSDDVRLIVEIVVASSQVGRIIGKGGQNVRELQRVTGSLI 413
+++ D + ++++V+S +G +IGK G + E+++ T + I
Sbjct: 386 YINDEDAENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANI 428
>At4g18375.1 68417.m02726 KH domain-containing protein contains
similarity to RNA-binding KH-domains PF:00013
Length = 532
Score = 54.8 bits (126), Expect = 1e-07
Identities = 39/171 (22%), Positives = 83/171 (48%), Gaps = 9/171 (5%)
Query: 74 SRPTDFPLRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVH-RKDNVGSLEKAITIYG- 131
SR + ++L + +IG+ GSTI+ I + S + ++V+ + G E I +
Sbjct: 307 SRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTAT 366
Query: 132 -NPENCTNACKRILEVMQQEANNTNKGEICLKILAHNNLIGRIIGKGGNTIKRIMQETDT 190
+P++ + + ++Q+ N+ + + +++L + +IG +IGK G+ I I + T+
Sbjct: 367 ESPDDMKSMAVEAVLLLQEYINDEDAENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNA 426
Query: 191 KITVSSINDINSFNLERIITVKGSIENMAKAESQISAKLRQSYENDLQVLA 241
I +S + ++ V G + ++ A QI +LR+ D +A
Sbjct: 427 NICIS------KGKKDDLVEVSGEVSSVRDALIQIVLRLREDVLGDKDSVA 471
Score = 41.1 bits (92), Expect = 0.002
Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 32/176 (18%)
Query: 82 RLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNVGSLEKAITIY----------- 130
R+L D+VG +IG+ G I I ++A++ V + + G ++ ITIY
Sbjct: 39 RILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLH-GCSQRVITIYCSVKEKQEEIG 97
Query: 131 -----GNPENCT-NACKRILE--VMQQEANNT------NKGEICLKILAHNNLIGRIIGK 176
P C +A ++ + V E NNT + + C ++L + +IGK
Sbjct: 98 FTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVDRDDNKEC-RLLVPFSQSSSLIGK 156
Query: 177 GGNTIKRIMQET--DTKITVSSIND---INSFNLERIITVKGSIENMAKAESQISA 227
G IKRI + T K+ ++D + + + ++ + G E++ +A +SA
Sbjct: 157 AGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSA 212
Score = 37.1 bits (82), Expect = 0.025
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 144 LEVMQQEANNTNKGEICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKITVS-SINDINS 202
L V ++ E+ K+L I R+IGKGG+TIKRI + + + I V+ S
Sbjct: 297 LPVTHGFGGSSRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGD 356
Query: 203 FNLERIITVKGSIENMAKAESQISAKLRQSYEND 236
I+T S ++M K+ + + L Q Y ND
Sbjct: 357 DECVIIVTATESPDDM-KSMAVEAVLLLQEYIND 389
Score = 33.9 bits (74), Expect = 0.23
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 370 GFMSGSDDVRLIVEIVVASSQVGRIIGKGGQNVRELQRVTGSLIKL 415
GF S L+ +++ + R+IGKGG ++ ++ +GS I++
Sbjct: 302 GFGGSSRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEV 347
Score = 32.7 bits (71), Expect = 0.54
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 82 RLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKD-----NVGSLE--KAITIYGNPE 134
RLLV ++IG+ G I+ I +++RA V V KD +V ++E + I G PE
Sbjct: 142 RLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPE 201
Query: 135 NCTNACKRILEVM 147
+ A + +M
Sbjct: 202 SVKQALFAVSAIM 214
Score = 31.9 bits (69), Expect = 0.95
Identities = 19/75 (25%), Positives = 32/75 (42%)
Query: 288 DSQETTYLYIPNNAVGAIIGTKGSHIRNIIRFSNASVKIAPLXXXXXXXXXXXXXXRKVT 347
D + L +P + ++IG G +I+ I R + ASVK+ V
Sbjct: 136 DDNKECRLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVV 195
Query: 348 IVGSPEAQWKAQYLI 362
I G PE+ +A + +
Sbjct: 196 ISGEPESVKQALFAV 210
Score = 31.1 bits (67), Expect = 1.7
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 155 NKGEICL-KILAHNNLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITVKG 213
N+ E+ + +IL +++G +IGK G I I T KI V + ++ + +R+IT+
Sbjct: 31 NRDELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKV--FDQLHGCS-QRVITIYC 87
Query: 214 SIE 216
S++
Sbjct: 88 SVK 90
Score = 29.1 bits (62), Expect = 6.7
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 384 IVVASSQVGRIIGKGGQNVRELQRVTGSLIKL 415
++V SQ +IGK G+N++ ++R T + +K+
Sbjct: 143 LLVPFSQSSSLIGKAGENIKRIRRRTRASVKV 174
Score = 28.7 bits (61), Expect = 8.8
Identities = 11/43 (25%), Positives = 27/43 (62%)
Query: 371 FMSGSDDVRLIVEIVVASSQVGRIIGKGGQNVRELQRVTGSLI 413
+++ D + ++++V+S +G +IGK G + E+++ T + I
Sbjct: 386 YINDEDAENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANI 428
>At2g25970.1 68415.m03117 KH domain-containing protein
Length = 632
Score = 54.0 bits (124), Expect = 2e-07
Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 17/154 (11%)
Query: 90 VGAIIGRQGSTIRLITQQSRARVDVHRKDNV--GSLEKAITIYGNPENCTNACKRILEVM 147
VG IIG+ G TI+ + QS A++ V R + + + + G P+ + A + I +V+
Sbjct: 145 VGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNCATRTVDLTGTPDQISKAEQLITDVL 204
Query: 148 QQ-EANNT-------------NKGEICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKIT 193
Q+ EA NT G + NN +G IIGKGG TIK + +T +I
Sbjct: 205 QEAEAGNTAGSGGGGGRRMGGQAGADQFVMKIPNNKVGLIIGKGGETIKSMQAKTGARIQ 264
Query: 194 VSSIN-DINSFNLERIITVKGSIENMAKAESQIS 226
V ++ ER + + G E + A+ ++
Sbjct: 265 VIPLHLPPGDPTPERTLQIDGITEQIEHAKQLVN 298
Score = 41.9 bits (94), Expect = 9e-04
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 17/136 (12%)
Query: 292 TTYLYIPNNAVGAIIGTKGSHIRNIIRFSNASVKIAPLXXXXXXXXXXXXXXRKVTIVGS 351
T + IPN VG IIG G I+ + S A +++ R V + G+
Sbjct: 135 TKKIDIPNMRVGVIIGKGGETIKYLQLQSGAKIQVT-----RDMDADPNCATRTVDLTGT 189
Query: 352 PEAQWKAQYLIFEKMREE--GFMSGSDDV---RLIVE-------IVVASSQVGRIIGKGG 399
P+ KA+ LI + ++E G +GS R+ + + + +++VG IIGKGG
Sbjct: 190 PDQISKAEQLITDVLQEAEAGNTAGSGGGGGRRMGGQAGADQFVMKIPNNKVGLIIGKGG 249
Query: 400 QNVRELQRVTGSLIKL 415
+ ++ +Q TG+ I++
Sbjct: 250 ETIKSMQAKTGARIQV 265
Score = 41.9 bits (94), Expect = 9e-04
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 162 KILAHNNLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITVKGSIENMAKA 221
KI N +G IIGKGG TIK + ++ KI V+ D + R + + G+ + ++KA
Sbjct: 137 KIDIPNMRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNCATRTVDLTGTPDQISKA 196
Query: 222 ESQISAKLRQS 232
E I+ L+++
Sbjct: 197 EQLITDVLQEA 207
Score = 31.5 bits (68), Expect = 1.2
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 297 IPNNAVGAIIGTKGSHIRNIIRFSNASVKIAPL 329
IPNN VG IIG G I+++ + A +++ PL
Sbjct: 236 IPNNKVGLIIGKGGETIKSMQAKTGARIQVIPL 268
Score = 30.7 bits (66), Expect = 2.2
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 85 VQSDMVGAIIGRQGSTIRLITQQSRARVDV---HRKDNVGSLEKAITIYGNPENCTNACK 141
+ ++ VG IIG+ G TI+ + ++ AR+ V H + E+ + I G E +A +
Sbjct: 236 IPNNKVGLIIGKGGETIKSMQAKTGARIQVIPLHLPPGDPTPERTLQIDGITEQIEHAKQ 295
Query: 142 RILEVMQQEANNTN 155
+ E++ E N
Sbjct: 296 LVNEIISGENRMRN 309
>At1g14170.1 68414.m01675 KH domain-containing protein location of
EST 219C14T7 , gb|N38506
Length = 454
Score = 50.0 bits (114), Expect = 3e-06
Identities = 44/179 (24%), Positives = 81/179 (45%), Gaps = 9/179 (5%)
Query: 78 DFPLRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRK----DNVGSLEKAITIYGNP 133
+F + + ++ VG +IG+ G I I Q++ A + V+ D+ + Y +
Sbjct: 243 EFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQ 302
Query: 134 ENCTNACKRILEVMQQEAN-NTNKGEICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKI 192
NA R+ + ++ + N I ++L ++ IG +IGKGG I + T I
Sbjct: 303 SPAVNAAIRLQQRCSEKVGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANI 362
Query: 193 TVSSINDINSF--NLERIITVKGSIENMAKAESQISAKLR-QSYENDL-QVLAPQSIMF 247
+ D+ E ++ + GS + KA +Q+ +LR S++ D VL P S +
Sbjct: 363 RILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLRANSFDMDHGLVLLPTSFPY 421
Score = 44.4 bits (100), Expect = 2e-04
Identities = 56/267 (20%), Positives = 116/267 (43%), Gaps = 27/267 (10%)
Query: 156 KGEICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKITVSSIN---DINSFNLERIITVK 212
K + +++L ++ IG +IGKGG I+ + +T+ +I V + + + + ++ +
Sbjct: 118 KQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLPACALTLSHDELLLII 177
Query: 213 GSIENMAKAESQISAKLRQSYENDLQVLAPQSIMFPGLH-PMAMMSTGRGFCGXXXXXXX 271
G + +A Q+++ L + +L S +H P AM+ +
Sbjct: 178 GEPLVVREALYQVASLLHDNPSRFQHLLLSSSSS--SMHQPGAMLMSA------------ 223
Query: 272 XXXXXXXXXXXXXXXXDSQETTYLYI-PNNAVGAIIGTKGSHIRNIIRFSNASVKIAPLX 330
D++E +I P VG +IG G I I + + A++++
Sbjct: 224 ALTSSHRNYAVRRDIADAREFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRVNT-S 282
Query: 331 XXXXXXXXXXXXXRKVTIVGSP--EAQWKAQYLIFEKMREEGFMSGSDDVRLIVEIVVAS 388
++ SP A + Q EK+ ++ ++D+ + ++V+S
Sbjct: 283 ETDDDDCIIFISSKEFYEDQSPAVNAAIRLQQRCSEKVGKD-----ANDLAISTRLLVSS 337
Query: 389 SQVGRIIGKGGQNVRELQRVTGSLIKL 415
SQ+G +IGKGG + E++ VT + I++
Sbjct: 338 SQIGCLIGKGGAVISEMRSVTRANIRI 364
Score = 38.3 bits (85), Expect = 0.011
Identities = 19/72 (26%), Positives = 38/72 (52%)
Query: 382 VEIVVASSQVGRIIGKGGQNVRELQRVTGSLIKLXXXXXXXXXXXXXHETTVHIVGPFYS 441
V ++V S Q+G +IGKGGQ ++ L+ T + I++ H+ + I+G
Sbjct: 123 VRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLPACALTLSHDELLLIIGEPLV 182
Query: 442 VQSAQRRIRAMV 453
V+ A ++ +++
Sbjct: 183 VREALYQVASLL 194
Score = 31.1 bits (67), Expect = 1.7
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 81 LRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDV 114
+R+LV SD +G +IG+ G I+ + + A++ V
Sbjct: 123 VRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRV 156
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 171 GRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITVKGSIENM 218
G IIGKGG K+I ET + + IN+ ER++T+ + E +
Sbjct: 31 GSIIGKGGEIAKQIRSETKSNM---RINEALPGCEERVVTMYSTNEEL 75
>At4g26000.1 68417.m03745 KH domain-containing protein
single-stranded nucleic acid-binding protein CBP -
mouse, PIR2:S78515
Length = 495
Score = 49.2 bits (112), Expect = 6e-06
Identities = 44/171 (25%), Positives = 82/171 (47%), Gaps = 16/171 (9%)
Query: 76 PTDFPLRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNVGSLEKAITIYGNPE- 134
P D R++V VGAIIGR+G I+ + +++RAR+ V V + ++ + I G E
Sbjct: 71 PGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKV-LDGPVNTPDRIVLISGKEEP 129
Query: 135 --NCTNACKRILEVMQQ--------EANNTNKGEI--CLKILAHNNLIGRIIGKGGNTIK 182
+ A +L V ++ + + N G + +++L + +IGK G+ IK
Sbjct: 130 EAYMSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQAINLIGKQGSLIK 189
Query: 183 RIMQETDTKITVSSINDINSFNL--ERIITVKGSIENMAKAESQISAKLRQ 231
I++ + + + S + + ERI+ ++G + KA I LR+
Sbjct: 190 SIVENSGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAIVGHLRR 240
Score = 34.3 bits (75), Expect = 0.18
Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
Query: 295 LYIPNNAVGAIIGTKGSHIRNIIRFSNASVKIAPLXXXXXXXXXXXXXXRKVTIVGSPEA 354
+ +P VGAIIG KG I+ + + A +K+ + SP
Sbjct: 78 MIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGKEEPEAYMSPAM 137
Query: 355 QWKAQYLIFEKM-----REEGFMSGSDDVRLIVEIVVASSQVGRIIGKGGQNVRELQRVT 409
A +F ++ ++ + + V V ++VAS+Q +IGK G ++ + +
Sbjct: 138 D--AVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQAINLIGKQGSLIKSIVENS 195
Query: 410 GSLIKL 415
G+ +++
Sbjct: 196 GASVRI 201
>At5g64390.2 68418.m08088 KH domain-containing RNA-binding protein
(HEN4) contains similarity to RNA-binding protein;
identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
contains Pfam domain PF00013: KH domain; identical to
cDNA HEN4 (HEN4) GI:28261402
Length = 824
Score = 47.2 bits (107), Expect = 2e-05
Identities = 36/174 (20%), Positives = 83/174 (47%), Gaps = 13/174 (7%)
Query: 78 DFPLRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDV-HRKDNVGSLEKAITIYGNPENC 136
D ++L ++ G +IG G +R++ ++ A ++V + D+ A+T NPE
Sbjct: 451 DVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQ 510
Query: 137 TNACK--------RILEVMQQEA-NNTNKGEICLKILAHNNLIGRIIGKGGNTIKRIMQE 187
++ + R+ E+ + +N + I +++ + IG ++GKGG + + +
Sbjct: 511 SSPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKT 570
Query: 188 TDTKITVSSI--NDINSFNLERIITVKGSIENMAKAESQISAKLRQS-YENDLQ 238
T I + + N ++++ + G N+ +A I+++LR S + N ++
Sbjct: 571 TGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMK 624
Score = 45.6 bits (103), Expect = 7e-05
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 26/180 (14%)
Query: 82 RLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNVGSLEKAITIY----------- 130
RLL VGA+IG+ G+ I+ + Q + A++ V + GS ++ ITI
Sbjct: 50 RLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPS-GSPDRVITIIAQADSKSRVKL 108
Query: 131 -----GNPEN--------CTNACKRILEVMQQEANNTNKGEICLKILAHNNLIGRIIGKG 177
GN E + A +++V + A + + ++L ++ G +IGKG
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTVVCRLLTESSHAGAVIGKG 168
Query: 178 GNTIKRIMQETDTKITVSSIN-DINSFNLERIITVKGSIENMAKAESQISAKLRQSYEND 236
G + I +ET KI++ N I + + ++ V+G+ + KA IS L+ D
Sbjct: 169 GQMVGSIRKETGCKISIRIENLPICADTDDEMVEVEGNAIAVKKALVSISRCLQNCQSID 228
Score = 44.8 bits (101), Expect = 1e-04
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 6/146 (4%)
Query: 303 GAIIGTKGSHIRNIIRFSNASVKIAPLXXXXXXXXXXXXXXRKVTIVGSPEAQWKAQYLI 362
G +IGT G +R + + A + + SP AQ KA LI
Sbjct: 464 GGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQSSP-AQ-KAIMLI 521
Query: 363 FEKMRE---EGFMSGSDDVRLIVEIVVASSQVGRIIGKGGQNVRELQRVTGSLIKLXXXX 419
F ++ E + + +VV +SQ+G ++GKGG V E+++ TG+ I++
Sbjct: 522 FSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQI-LKV 580
Query: 420 XXXXXXXXXHETTVHIVGPFYSVQSA 445
++ V I G F +V+ A
Sbjct: 581 EQNPKCISENDQVVQITGEFPNVREA 606
Score = 37.1 bits (82), Expect = 0.025
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 157 GEICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITVKGSIE 216
G ++L + +G +IGK GN IK++ Q T KI V + S + +R+IT+ +
Sbjct: 45 GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRV---EEPPSGSPDRVITIIAQAD 101
Query: 217 NMAKAE 222
+ ++ +
Sbjct: 102 SKSRVK 107
Score = 35.5 bits (78), Expect = 0.077
Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 14/135 (10%)
Query: 295 LYIPNNAVGAIIGTKGSHIRNIIRFSNASVKIA--PLXXXXXXXXXXXXXXRKVTIV--- 349
L P + VGA+IG G+ I+ + + + A +++ P K +
Sbjct: 51 LLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKLGA 110
Query: 350 ---GSPEAQWKAQYLIFEKMRE------EGFMSGSDDVRLIVEIVVASSQVGRIIGKGGQ 400
G+ E + K + + K + E + +D ++ ++ SS G +IGKGGQ
Sbjct: 111 NNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTVVCRLLTESSHAGAVIGKGGQ 170
Query: 401 NVRELQRVTGSLIKL 415
V +++ TG I +
Sbjct: 171 MVGSIRKETGCKISI 185
Score = 29.9 bits (64), Expect = 3.8
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 374 GSDDVRLIVEIVVASSQVGRIIGKGGQNVRELQRVTGSLIKL 415
G+ DV + +I+ ++ G +IG GG+ VR L TG+ I +
Sbjct: 448 GNQDV--VFKILCSTENAGGVIGTGGKVVRMLHSETGAFINV 487
>At5g64390.1 68418.m08089 KH domain-containing RNA-binding protein
(HEN4) contains similarity to RNA-binding protein;
identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
contains Pfam domain PF00013: KH domain; identical to
cDNA HEN4 (HEN4) GI:28261402
Length = 857
Score = 47.2 bits (107), Expect = 2e-05
Identities = 36/174 (20%), Positives = 83/174 (47%), Gaps = 13/174 (7%)
Query: 78 DFPLRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDV-HRKDNVGSLEKAITIYGNPENC 136
D ++L ++ G +IG G +R++ ++ A ++V + D+ A+T NPE
Sbjct: 451 DVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQ 510
Query: 137 TNACK--------RILEVMQQEA-NNTNKGEICLKILAHNNLIGRIIGKGGNTIKRIMQE 187
++ + R+ E+ + +N + I +++ + IG ++GKGG + + +
Sbjct: 511 SSPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKT 570
Query: 188 TDTKITVSSI--NDINSFNLERIITVKGSIENMAKAESQISAKLRQS-YENDLQ 238
T I + + N ++++ + G N+ +A I+++LR S + N ++
Sbjct: 571 TGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMK 624
Score = 45.6 bits (103), Expect = 7e-05
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 26/180 (14%)
Query: 82 RLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNVGSLEKAITIY----------- 130
RLL VGA+IG+ G+ I+ + Q + A++ V + GS ++ ITI
Sbjct: 50 RLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPS-GSPDRVITIIAQADSKSRVKL 108
Query: 131 -----GNPEN--------CTNACKRILEVMQQEANNTNKGEICLKILAHNNLIGRIIGKG 177
GN E + A +++V + A + + ++L ++ G +IGKG
Sbjct: 109 GANNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTVVCRLLTESSHAGAVIGKG 168
Query: 178 GNTIKRIMQETDTKITVSSIN-DINSFNLERIITVKGSIENMAKAESQISAKLRQSYEND 236
G + I +ET KI++ N I + + ++ V+G+ + KA IS L+ D
Sbjct: 169 GQMVGSIRKETGCKISIRIENLPICADTDDEMVEVEGNAIAVKKALVSISRCLQNCQSID 228
Score = 44.8 bits (101), Expect = 1e-04
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 6/146 (4%)
Query: 303 GAIIGTKGSHIRNIIRFSNASVKIAPLXXXXXXXXXXXXXXRKVTIVGSPEAQWKAQYLI 362
G +IGT G +R + + A + + SP AQ KA LI
Sbjct: 464 GGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQSSP-AQ-KAIMLI 521
Query: 363 FEKMRE---EGFMSGSDDVRLIVEIVVASSQVGRIIGKGGQNVRELQRVTGSLIKLXXXX 419
F ++ E + + +VV +SQ+G ++GKGG V E+++ TG+ I++
Sbjct: 522 FSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQI-LKV 580
Query: 420 XXXXXXXXXHETTVHIVGPFYSVQSA 445
++ V I G F +V+ A
Sbjct: 581 EQNPKCISENDQVVQITGEFPNVREA 606
Score = 37.1 bits (82), Expect = 0.025
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 157 GEICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITVKGSIE 216
G ++L + +G +IGK GN IK++ Q T KI V + S + +R+IT+ +
Sbjct: 45 GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRV---EEPPSGSPDRVITIIAQAD 101
Query: 217 NMAKAE 222
+ ++ +
Sbjct: 102 SKSRVK 107
Score = 35.5 bits (78), Expect = 0.077
Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 14/135 (10%)
Query: 295 LYIPNNAVGAIIGTKGSHIRNIIRFSNASVKIA--PLXXXXXXXXXXXXXXRKVTIV--- 349
L P + VGA+IG G+ I+ + + + A +++ P K +
Sbjct: 51 LLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSRVKLGA 110
Query: 350 ---GSPEAQWKAQYLIFEKMRE------EGFMSGSDDVRLIVEIVVASSQVGRIIGKGGQ 400
G+ E + K + + K + E + +D ++ ++ SS G +IGKGGQ
Sbjct: 111 NNNGNAEGEKKEEEVEVSKAQGALIKVFELLAAEADSDTVVCRLLTESSHAGAVIGKGGQ 170
Query: 401 NVRELQRVTGSLIKL 415
V +++ TG I +
Sbjct: 171 MVGSIRKETGCKISI 185
Score = 33.1 bits (72), Expect = 0.41
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 77 TDFPLRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNVGSLEKAITIYGNPENC 136
T+ + + V ++ + + G QG + + Q S ARV +H + +G+ ++ I I G P+
Sbjct: 774 TNTTVEIRVPANAMSFVYGEQGYNLEQLRQISGARVIIH-EPPLGTSDRIIVISGTPDQ- 831
Query: 137 TNACKRIL 144
T A + +L
Sbjct: 832 TQAAQNLL 839
Score = 29.9 bits (64), Expect = 3.8
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 374 GSDDVRLIVEIVVASSQVGRIIGKGGQNVRELQRVTGSLIKL 415
G+ DV + +I+ ++ G +IG GG+ VR L TG+ I +
Sbjct: 448 GNQDV--VFKILCSTENAGGVIGTGGKVVRMLHSETGAFINV 487
>At2g22600.1 68415.m02679 KH domain-containing protein
Length = 632
Score = 42.7 bits (96), Expect = 5e-04
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 150 EANNTNKGEICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERII 209
+ N+ + ++ KI+ + + G IIGK G I+ + ET I+V + ++ ER++
Sbjct: 268 DGGNSTERKVVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKVSG---ERVV 324
Query: 210 TVKGSIENMAKAESQISAKLRQSYENDLQVLAPQSIMFPGLHPMAMMST 258
TV EN+ S L + +++ + + PGLH A++ T
Sbjct: 325 TVSAR-ENLESRYSHAQNALALVFARSVEIDVEKGLR-PGLHNGAIVKT 371
Score = 42.3 bits (95), Expect = 7e-04
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 81 LRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNVGSLEKAITIYGNPENCTNAC 140
L L V+ D +G++ GR G+ + + Q S A VDV KD G+ E + I GNPE A
Sbjct: 566 LELAVEKDALGSLYGRDGTGVDNLQQISGANVDV--KDPTGT-EATVLISGNPEQARTAM 622
Query: 141 KRILEVMQQE 150
I ++ +
Sbjct: 623 SLIESILTDQ 632
Score = 36.3 bits (80), Expect = 0.044
Identities = 40/164 (24%), Positives = 75/164 (45%), Gaps = 15/164 (9%)
Query: 82 RLLVQSDMVGAIIGRQGSTIRLITQQSRARVDV--------HRKDNVGSLEKAITIYGNP 133
+++ S + G IIG+QG+ IR + ++ A + V R V + E + Y +
Sbjct: 280 KIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVSARENLESRYSHA 339
Query: 134 ENC-TNACKRILEVMQQEANNT---NKGEICLKILAHNNLIGRIIGKGGNTIKRIMQETD 189
+N R +E+ ++ N + K+L ++ G GN I D
Sbjct: 340 QNALALVFARSVEIDVEKGLRPGLHNGAIVKTKLLVPSHFANSFNG-NGNREAIIATGAD 398
Query: 190 TKITV-SSINDINSFNLERIITVKGSIENMAKAESQISAKLRQS 232
I+V + + + S N E +I +KG ++ KA + +S+KLR++
Sbjct: 399 VHISVGNQVLEWISEN-EVVIEIKGEYSHVQKALTHVSSKLREN 441
Score = 35.1 bits (77), Expect = 0.10
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 158 EICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKITVSS 196
E ++++ H ++IG IIG G + ++ +ET TKI S
Sbjct: 24 ETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCES 62
Score = 32.7 bits (71), Expect = 0.54
Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 370 GFMSGSDDVRLIVEIVVASSQVGRIIGKGGQNVRELQRVTGSLIKL 415
G + G D+ I+ +Q+G ++G GG+NV ++R +G++I++
Sbjct: 131 GVVDGEDE-EAYCGILADRNQIGAVLGLGGKNVEWMRRNSGAMIRV 175
Score = 30.7 bits (66), Expect = 2.2
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 375 SDDVRLIVEIVVASSQVGRIIGKGGQNVRELQRVTGSLIKL 415
S + +++ +I+ S G IIGK G +R LQ TG+ I +
Sbjct: 272 STERKVVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISV 312
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 163 ILAHNNLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITVKGSIENMAKAE 222
ILA N IG ++G GG ++ + + + I V + N + +I + G + + KA
Sbjct: 144 ILADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLPPPICGTKN-DELIQITGDVLAVKKAL 202
Query: 223 SQISAKLRQS 232
+S+ ++ +
Sbjct: 203 VMVSSYIQNN 212
>At4g10070.1 68417.m01647 KH domain-containing protein DNA-directed
RNA polymerase (EC 2.7.7.6) II largestchain - mouse,
PIR2:A28490
Length = 725
Score = 39.5 bits (88), Expect = 0.005
Identities = 37/168 (22%), Positives = 69/168 (41%), Gaps = 18/168 (10%)
Query: 82 RLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNV--GSLEKAITIYGNPENCTNA 139
R+ V S VG +IG+ G TIR + S A++ + R S + + I G+ C +
Sbjct: 179 RIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSALRPVEIIGSVA-CIES 237
Query: 140 CKRILEVMQQEANNTNKGEIC---------------LKILAHNNLIGRIIGKGGNTIKRI 184
++++ + EA + ++I N+ +G IIG+GG TIK +
Sbjct: 238 AEKLISAVIAEAEAGGSPALVARGHPSTHAIGIPEQIEIKVPNDKVGLIIGRGGETIKNM 297
Query: 185 MQETDTKITVSSINDINSFNLERIITVKGSIENMAKAESQISAKLRQS 232
+ + + + ER + + G + A I + Q+
Sbjct: 298 QTRSGARTQLIPQHAEGDGLKERTVRISGDKMQIDIATDMIKDVMNQN 345
Score = 38.7 bits (86), Expect = 0.008
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 384 IVVASSQVGRIIGKGGQNVRELQRVTGSLIKLXXXXXXXXXXXXXHETTVHIVGPFYSVQ 443
I V SS+VG +IGKGG+ +R LQ +G+ I++ V I+G ++
Sbjct: 180 IDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSAL---RPVEIIGSVACIE 236
Query: 444 SAQRRIRAMV 453
SA++ I A++
Sbjct: 237 SAEKLISAVI 246
Score = 37.5 bits (83), Expect = 0.019
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 81 LRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDV--HRKDNVGSLEKAITIYGNPENCTN 138
+ + V +D VG IIGR G TI+ + +S AR + + G E+ + I G+
Sbjct: 274 IEIKVPNDKVGLIIGRGGETIKNMQTRSGARTQLIPQHAEGDGLKERTVRISGDKMQIDI 333
Query: 139 ACKRILEVMQQEA 151
A I +VM Q A
Sbjct: 334 ATDMIKDVMNQNA 346
Score = 37.1 bits (82), Expect = 0.025
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 18/140 (12%)
Query: 289 SQETTY-LYIPNNAVGAIIGTKGSHIRNIIRFSNASVKIAPLXXXXXXXXXXXXXXRKVT 347
+Q TT + +P++ VG +IG G IR + S A ++I R V
Sbjct: 173 TQSTTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQIL-----RDSEADPSSALRPVE 227
Query: 348 IVGSPEAQWKAQYLIFEKMREEG-------FMSGSDDVRLI-----VEIVVASSQVGRII 395
I+GS A+ LI + E G I +EI V + +VG II
Sbjct: 228 IIGSVACIESAEKLISAVIAEAEAGGSPALVARGHPSTHAIGIPEQIEIKVPNDKVGLII 287
Query: 396 GKGGQNVRELQRVTGSLIKL 415
G+GG+ ++ +Q +G+ +L
Sbjct: 288 GRGGETIKNMQTRSGARTQL 307
Score = 36.7 bits (81), Expect = 0.033
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 145 EVMQQEANNTNKGEICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFN 204
E Q+E + T +I ++ +G +IGKGG TI+ + + KI + ++ + +
Sbjct: 164 EKSQKEVDGTQS--TTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSS 221
Query: 205 LERIITVKGSIENMAKAESQISAKLRQS 232
R + + GS+ + AE ISA + ++
Sbjct: 222 ALRPVEIIGSVACIESAEKLISAVIAEA 249
Score = 29.5 bits (63), Expect = 5.0
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 291 ETTYLYIPNNAVGAIIGTKGSHIRNIIRFSNASVKIAP 328
E + +PN+ VG IIG G I+N+ S A ++ P
Sbjct: 272 EQIEIKVPNDKVGLIIGRGGETIKNMQTRSGARTQLIP 309
>At1g33680.1 68414.m04166 KH domain-containing protein similar to
FUSE binding protein 2 GB:AAC50892 GI:1575607 from [Homo
sapiens]
Length = 759
Score = 37.9 bits (84), Expect = 0.014
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 384 IVVASSQVGRIIGKGGQNVRELQRVTGSLIKLXXXXXXXXXXXXXHETTVHIVGPFYSVQ 443
I V SS+VG +IGKGG+ VR LQ +G+ I++ V I+G ++
Sbjct: 236 IDVPSSKVGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADPSSAL---RPVEIIGTVSCIE 292
Query: 444 SAQRRIRAMV 453
A++ I A++
Sbjct: 293 KAEKLINAVI 302
Score = 35.1 bits (77), Expect = 0.10
Identities = 17/76 (22%), Positives = 38/76 (50%)
Query: 170 IGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITVKGSIENMAKAESQISAKL 229
+G +IGKGG ++ + + KI + + + + R + + G++ + KAE I+A +
Sbjct: 243 VGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADPSSALRPVEIIGTVSCIEKAEKLINAVI 302
Query: 230 RQSYENDLQVLAPQSI 245
+ + LA + +
Sbjct: 303 AEVEAGGVPALAARGV 318
Score = 28.7 bits (61), Expect = 8.8
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 288 DSQETTY-LYIPNNAVGAIIGTKGSHIRNIIRFSNASVKIAPLXXXXXXXXXXXXXXRKV 346
D+Q TT + +P++ VG +IG G +R + S A ++I R V
Sbjct: 228 DTQSTTRRIDVPSSKVGTLIGKGGEMVRYLQVNSGAKIQI-----RRDAEADPSSALRPV 282
Query: 347 TIVGSPEAQWKAQYLI---FEKMREEGFMS-GSDDVRLIVEIVVASSQVGRIIGKGGQNV 402
I+G+ KA+ LI ++ G + + V +EI V S +V GG+ +
Sbjct: 283 EIIGTVSCIEKAEKLINAVIAEVEAGGVPALAARGVPEQMEIKVPSDKV----DPGGETI 338
Query: 403 RELQRVTGSLIKL 415
+ +Q + + I+L
Sbjct: 339 KNMQTKSRARIQL 351
>At5g53060.1 68418.m06592 KH domain-containing protein
Length = 652
Score = 37.5 bits (83), Expect = 0.019
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 157 GEICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKITV----SSINDINSFNLERIITVK 212
G + +++ +G ++GKGG I+++ ET T I + S++ S + E I+ +
Sbjct: 174 GRVVTRLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLS-EEIVQIV 232
Query: 213 GSIENMAKAESQISAKLRQSYEND 236
G + + A + +S++LR+S D
Sbjct: 233 GELNAVKNALAIVSSRLRESQHRD 256
Score = 34.7 bits (76), Expect = 0.13
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 379 RLIVEIVVASSQVGRIIGKGGQNVRELQRVTGSLIKLXXXXXXXXXXXXXHETTVHIVGP 438
R++ +VV+ VG ++GKGG+ + +++ T + I++ E V IVG
Sbjct: 175 RVVTRLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGE 234
Query: 439 FYSVQSA 445
+V++A
Sbjct: 235 LNAVKNA 241
Score = 31.9 bits (69), Expect = 0.95
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 162 KILAHNNLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITV 211
+IL H+ G +IGK G IK I Q T I +++++ + ERII +
Sbjct: 71 RILCHDAKAGGVIGKSGTIIKSIRQHTGAWI---NVHELVPGDAERIIEI 117
Score = 30.3 bits (65), Expect = 2.9
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 82 RLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNVGSLEKAITIYGN 132
R+L G +IG+ G+ I+ I Q + A ++VH G E+ I I N
Sbjct: 71 RILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHEL-VPGDAERIIEISDN 120
>At3g12130.1 68416.m01509 KH domain-containing protein / zinc finger
(CCCH type) family protein
Length = 248
Score = 35.1 bits (77), Expect = 0.10
Identities = 18/58 (31%), Positives = 38/58 (65%), Gaps = 3/58 (5%)
Query: 168 NLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITVKGSIENMAKAESQI 225
+L G IIGKGG + K+I ++T K+++ + NL+ I+ ++G++E +++A + +
Sbjct: 123 SLAGAIIGKGGVSSKQICRQTGVKLSIQ--DHERDPNLKNIV-LEGTLEQISEASAMV 177
>At2g03110.1 68415.m00264 KH domain-containing protein
Length = 155
Score = 34.7 bits (76), Expect = 0.13
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 81 LRLLVQSDMVGAIIGRQGSTIRLITQQSRARVDVHRKDNVG-SLEKAITI 129
+R+LV SD +G +IG+ G I+ + + A++ V R DN+ EKA TI
Sbjct: 75 VRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRV-RNDNLPMCTEKARTI 123
Score = 30.7 bits (66), Expect = 2.2
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 159 ICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKITVSSIN 198
+ +++L ++ IG +IGKGG I+ + +T+ +I V + N
Sbjct: 73 VTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRVRNDN 112
Score = 30.7 bits (66), Expect = 2.2
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 382 VEIVVASSQVGRIIGKGGQNVRELQRVTGSLIKL 415
V ++V S Q+G +IGKGG ++ L+ T + I++
Sbjct: 75 VRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRV 108
>At5g56140.1 68418.m07003 KH domain-containing protein
Length = 315
Score = 33.9 bits (74), Expect = 0.23
Identities = 17/68 (25%), Positives = 34/68 (50%)
Query: 151 ANNTNKGEICLKILAHNNLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIIT 210
A T + +I + + N +GR++G GN++KR+ TD ++ + I E ++
Sbjct: 164 AKRTIRVDIPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEEMMR 223
Query: 211 VKGSIENM 218
K E++
Sbjct: 224 GKPGYEHL 231
>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
(CCCH type) family protein contains Pfam domains
PF00013: KH domain and PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 240
Score = 33.9 bits (74), Expect = 0.23
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 162 KILAHNNLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITVKGSIENMAKA 221
KI +L G IIGKGG K+I +ET K+ SI D +II ++G+ E + A
Sbjct: 117 KISVDASLAGAIIGKGGIHSKQICRETGAKL---SIKDHERDPNLKIIELEGTFEQINVA 173
Query: 222 ESQI 225
+
Sbjct: 174 SGMV 177
>At4g26480.1 68417.m03810 KH domain-containing protein qkI-7, Mus
musculus
Length = 555
Score = 32.7 bits (71), Expect = 0.54
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 168 NLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITVKGSIENM 218
N +GR++G GN++KR+ TD ++ + I E ++ K E++
Sbjct: 422 NFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKDPIKEDMMRGKPGYEHL 472
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 32.3 bits (70), Expect = 0.72
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 168 NLIGRIIGKGGNTIKRIMQETDTKITV 194
N IG IIG GNT KR+ +ET KI +
Sbjct: 256 NFIGLIIGPRGNTQKRMERETGAKIVI 282
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 32.3 bits (70), Expect = 0.72
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 168 NLIGRIIGKGGNTIKRIMQETDTKITV 194
N IG IIG GNT KR+ +ET KI +
Sbjct: 256 NFIGLIIGPRGNTQKRMERETGAKIVI 282
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 31.1 bits (67), Expect = 1.7
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 6 DCEGEGSSVFGRFWVLSFRICYRAINGLNGCELEGCRIKVEAAE 49
D + S FG + S + +AIN LNG +L+G +I+V AE
Sbjct: 283 DRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAE 326
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 31.1 bits (67), Expect = 1.7
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 6 DCEGEGSSVFGRFWVLSFRICYRAINGLNGCELEGCRIKVEAAE 49
D + S FG + S + +AIN LNG +L+G +I+V AE
Sbjct: 291 DRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAE 334
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 30.3 bits (65), Expect = 2.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 176 KGGNTIKRIMQETDTKITVSSINDINSFNLERIITVKGSIENMAKAESQISAKLRQS 232
K G T++R D K + S N L R + +I N+A + +Q+SA L++S
Sbjct: 188 KAGGTLRRQSSGVDIKSS-SMEGSSNPPKLRRNSSAAANISNLASSSNQVSAPLKRS 243
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 30.3 bits (65), Expect = 2.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 176 KGGNTIKRIMQETDTKITVSSINDINSFNLERIITVKGSIENMAKAESQISAKLRQS 232
K G T++R D K + S N L R + +I N+A + +Q+SA L++S
Sbjct: 183 KAGGTLRRQSSGVDIKSS-SMEGSSNPPKLRRNSSAAANISNLASSSNQVSAPLKRS 238
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 30.3 bits (65), Expect = 2.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 12 SSVFGRFWVLSFRICYRAINGLNGCELEGCRIKVEAAEQN 51
S FG S AIN +NGC+L G ++KV+ N
Sbjct: 379 SKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKRDN 418
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 30.3 bits (65), Expect = 2.9
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 12 SSVFGRFWVLSFRICYRAINGLNGCELEGCRIKVEAAEQN 51
S FG S AIN +NGC+L G ++KV+ N
Sbjct: 370 SKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKRDN 409
>At3g08620.1 68416.m01001 KH domain-containing protein
Length = 283
Score = 29.9 bits (64), Expect = 3.8
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 168 NLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITVKGSIENM 218
N +GR++G GN++KR+ T ++ + I E + K E++
Sbjct: 150 NFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPEKEEKLKGKPGYEHL 200
>At1g09660.2 68414.m01085 KH domain-containing quaking protein,
putative similar to GB:AAC67357
Length = 264
Score = 29.9 bits (64), Expect = 3.8
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 168 NLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITVKGSIENMAK 220
N +GRI+G GN++KR+ T ++ + + E + K E++ +
Sbjct: 162 NFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGKPGYEHLCE 214
>At1g09660.1 68414.m01084 KH domain-containing quaking protein,
putative similar to GB:AAC67357
Length = 298
Score = 29.9 bits (64), Expect = 3.8
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 168 NLIGRIIGKGGNTIKRIMQETDTKITVSSINDINSFNLERIITVKGSIENMAK 220
N +GRI+G GN++KR+ T ++ + + E + K E++ +
Sbjct: 162 NFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGKPGYEHLCE 214
>At4g32820.1 68417.m04668 expressed protein ; expression supported
by MPSS
Length = 1817
Score = 28.7 bits (61), Expect = 8.8
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 95 GRQGSTIRLITQQSRARVDVHRKDNVGSLEKAITIYGNPEN-CTNACKRILEVMQQEANN 153
G +G+ +R + A VD+ K ++ S + G P+ C N K LE + E N
Sbjct: 811 GEEGAFLRFAIKHLLA-VDMKVKSSINSPDGLGHDMGLPDKLCRNEVKSFLEEVHVEKNE 869
Query: 154 TNKGE 158
NK E
Sbjct: 870 NNKTE 874
>At1g26110.1 68414.m03186 expressed protein
Length = 611
Score = 28.7 bits (61), Expect = 8.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 233 YENDLQVLAPQSIMFPGLHPMAMMST 258
+ Q+LAP S+ FPGL P+ + S+
Sbjct: 241 FSTSSQMLAPSSLPFPGLPPVTLSSS 266
>At1g12790.1 68414.m01485 expressed protein
Length = 250
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 182 KRIMQETDTKIT-VSSINDINSFNLERIITVKGSIENMAKAESQ 224
KR +Q+T+ I V+SI +IN + + GSIE +AKA +
Sbjct: 175 KRTVQDTNIFIRFVTSIPNINKHDANTLYQAIGSIEAIAKASKE 218
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.135 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,243,999
Number of Sequences: 28952
Number of extensions: 281395
Number of successful extensions: 989
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 762
Number of HSP's gapped (non-prelim): 206
length of query: 472
length of database: 12,070,560
effective HSP length: 84
effective length of query: 388
effective length of database: 9,638,592
effective search space: 3739773696
effective search space used: 3739773696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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