Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000515-TA|BGIBMGA000515-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
         (105 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    20   4.6  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    20   4.6  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    20   4.6  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         19   8.0  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 20.2 bits (40), Expect = 4.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 80  NVPNLERSSAAQLNEGSN 97
           NV N E    A LN+GS+
Sbjct: 162 NVRNCELVGLADLNQGSD 179


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 20.2 bits (40), Expect = 4.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 80  NVPNLERSSAAQLNEGSN 97
           NV N E    A LN+GS+
Sbjct: 163 NVRNCELVGLADLNQGSD 180


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 20.2 bits (40), Expect = 4.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 80  NVPNLERSSAAQLNEGSN 97
           NV N E    A LN+GS+
Sbjct: 163 NVRNCELVGLADLNQGSD 180


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 19.4 bits (38), Expect = 8.0
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 71 PSVANKKMVNVPNL 84
          P +AN K+V  P L
Sbjct: 45 PPIANCKLVQAPKL 58


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.133    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,634
Number of Sequences: 317
Number of extensions: 770
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 105
length of database: 114,650
effective HSP length: 49
effective length of query: 56
effective length of database: 99,117
effective search space:  5550552
effective search space used:  5550552
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)
S2: 38 (19.4 bits)