Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000515-TA|BGIBMGA000515-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
         (105 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   3.1  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              20   5.4  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    20   7.1  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 12/37 (32%), Positives = 15/37 (40%)

Query: 41  FVDFPDQSAADRAIDKLHGYSFCGLPLIVEPSVANKK 77
           +V   D   A R       ++FCG P  V P V   K
Sbjct: 504 YVKLVDFGFAKRLDHGRKTWTFCGTPEYVAPEVILNK 540


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 71  PSVANKKMVNVPNLERSSAAQLNEGSNGSPSGGW 104
           P  ANK M+N    E+ +   L   + G+    W
Sbjct: 59  PQAANKGMINQYGGEQPTLRLLCSIAGGTSESQW 92


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 9   LPYEVDEAAVRQLFAEQNLTVAEISVKRG 37
           LPY  +  AV     E  +  A++ + RG
Sbjct: 345 LPYSPENQAVVARHDEAMIFPADVKINRG 373


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.133    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,715
Number of Sequences: 429
Number of extensions: 926
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 105
length of database: 140,377
effective HSP length: 50
effective length of query: 55
effective length of database: 118,927
effective search space:  6540985
effective search space used:  6540985
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)
S2: 38 (19.4 bits)