Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000515-TA|BGIBMGA000515-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(105 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 39 1e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.001
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 35 0.003
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 34 0.004
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 33 0.007
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 32 0.016
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 32 0.016
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 32 0.016
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi... 32 0.022
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 31 0.029
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 31 0.029
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 31 0.038
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 31 0.038
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 29 0.12
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 29 0.20
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 29 0.20
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 29 0.20
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 28 0.27
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 0.27
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 0.35
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1... 27 0.62
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 27 0.62
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 27 0.82
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 27 0.82
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 1.1
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 1.1
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 26 1.4
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 26 1.4
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 25 1.9
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce... 25 2.5
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 3.3
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 24 4.4
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 24 4.4
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 24 5.8
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 24 5.8
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 23 7.6
SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c... 23 7.6
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 39.1 bits (87), Expect = 1e-04
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVA-----EISVKRGGYAFVDFPDQSAADRAIDKLH 58
+Y+GNLP+ + + LF + + E + + G+ V F +++ A +I+KL+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 59 GYSFCGLPL 67
GY + G PL
Sbjct: 342 GYRYGGRPL 350
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 35.9 bits (79), Expect = 0.001
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQ------NLTVAEISVKRGGYAFVDFPDQSAADRAIDKL 57
+Y+GN+PYE+ E V +F + L + S + GY F ++ D + A A+ L
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 58 HGY 60
+ Y
Sbjct: 67 NNY 69
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 34.7 bits (76), Expect = 0.003
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISV--KRGG----YAFVDFPDQSAADRAIDK 56
+L I NLP+ + + + + V EI + K GG +AFV D+ AA+ A++
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNS 167
Query: 57 LHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNE 94
L+G G P+ V+ +V +K L+ +S+ + N+
Sbjct: 168 LNGTEIDGRPIAVDWAV-SKDAFEATTLKDASSEEENK 204
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 34.3 bits (75), Expect = 0.004
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE------QNLTVAEISVKRGGYAFVDFPDQSAADRAIDKL 57
+YIGNL ++++E + +F+E NL + + K G+AF+ + DQ + A+D +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNM 92
Query: 58 HGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGSNGS 99
L+ VA+ K VP E+ A + G +GS
Sbjct: 93 TNVKLLD-RLVRVDHVASYK---VPQKEKEPANLVPLGESGS 130
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 33.5 bits (73), Expect = 0.007
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQN------LTVAEISVKRGGYAFVDFPDQSAADRAIDKL 57
L++GNL +E +A +++ F + L E + K G+ FVDFPD +A++
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELG 289
Query: 58 H 58
H
Sbjct: 290 H 290
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 32.3 bits (70), Expect = 0.016
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEI----SVKRGGYAFVDFPDQSAADRAIDKLHG 59
L+I NL +++ + LF V +I +V+ G AFV + + A RA +KL G
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYG-PVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSG 72
Query: 60 YSFCGLPLIV 69
Y+F L+V
Sbjct: 73 YNFMDRYLVV 82
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 32.3 bits (70), Expect = 0.016
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE----QNLT-VAEISVKRGGYAFVDFPDQSAADRAIDKLH 58
+YI NL E+ E LF + +L+ V + + K G+ FV++ + A +A+D+L+
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 59 GYSFCGLPLIV 69
+ G L V
Sbjct: 323 DKEYKGKKLYV 333
Score = 31.9 bits (69), Expect = 0.022
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE----QNLTVAEISVKRG--GYAFVDFPDQSAADRAIDKL 57
LY+G L V EA + +LF ++ V +V R GYA+V+F + ++A+D+L
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 58 HGYSFCGLP 66
+ G P
Sbjct: 142 NYTLIKGRP 150
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 32.3 bits (70), Expect = 0.016
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAE----QNLTVAEISVKRG------GYAFVDFPDQSAADR 52
++++G L ++ +R LF + +T+ V+RG G AFV F +Q D+
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 53 AIDKLHGYSFCGLPLIVE 70
AI+ L+G + ++V+
Sbjct: 105 AIETLNGKTLDDREIVVQ 122
Score = 31.1 bits (67), Expect = 0.038
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 27/125 (21%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVK-----------------RG-GYAFVD 43
N +Y+ L + ++++F N T A I+V+ RG G+ FV
Sbjct: 205 NSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVS 264
Query: 44 FPDQSAADRAIDKLHGYSFCGLPLIVEPSV--------ANKKMVNVPNLERSSAAQLNEG 95
F + RAI++++G L L+V+ +V N+K N P +E S +A N
Sbjct: 265 FANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQNDENEKNENEP-IEASESAPTNVS 323
Query: 96 SNGSP 100
+ P
Sbjct: 324 DSTEP 328
>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
Usp102|Schizosaccharomyces pombe|chr 2|||Manual
Length = 249
Score = 31.9 bits (69), Expect = 0.022
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 30 AEISVKRGGYAFVDFPDQSAADRAIDKLHGYSFCGLPLIVEPSVANKKMV 79
A +++ G AFV F + A RA+ L GY G P++++ S + ++
Sbjct: 61 ARKTLRMRGQAFVVFDNLENASRALKDLQGYPLYGKPMMIQYSKSKSDII 110
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 31.5 bits (68), Expect = 0.029
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQ------NLTVAEISVKRGGYAFVDFPDQSAADRAID 55
N +++GN+PY+V E + ++F + L + + GY F +F D A+
Sbjct: 7 NVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVR 66
Query: 56 KLH 58
KL+
Sbjct: 67 KLN 69
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 31.5 bits (68), Expect = 0.029
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 12/110 (10%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG------GYAFVDFPDQSAADRAID 55
+K+ + NLP +V EA V++LF + +S+ G G A + F A RA +
Sbjct: 55 SKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPNGRSKGIATIIFSRPGDATRAYE 114
Query: 56 KLHGYSFCG-----LPLIVEPS-VANKKMVNVPNLERSSAAQLNEGSNGS 99
+ G G + +I++PS N V +SA G+ S
Sbjct: 115 QYEGRLVDGTRKMKVEIILDPSRQLNSLAARVSPASNASATASKNGAKSS 164
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 31.1 bits (67), Expect = 0.038
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 3 KLYIGNLPYEVDEAAVRQLFA-----EQ-NLTVAEISVKRGGYAFVDFPDQSAADRAIDK 56
+L++ NL Y E ++ LF EQ ++ + + + G+A++DF D A RA +
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 57 LHGYSFCGLPLIVEPSVANKKMV 79
L F G L V P+ A ++
Sbjct: 384 LDAKPFQGRLLHVLPAKARSSIL 406
Score = 25.4 bits (53), Expect = 1.9
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 38 GYAFVDFPDQSAADRAIDKLHGYSFCGLPLIVEPS 72
G+ FV+F D+++A A+ ++G+ G L ++ S
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLS 700
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 31.1 bits (67), Expect = 0.038
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE-QNLTVAEISVKRGG----------YAFVDFPDQSAADR 52
+Y+GNLP + + +LF N + + ++ +AF+ F ++ +AD
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 53 AIDKLHGYSFCGLPLIVE 70
AI L+G SF G L VE
Sbjct: 82 AIASLNGSSFQGNTLKVE 99
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 29.5 bits (63), Expect = 0.12
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE----QNLTVAEISV--KRGGYAFVDFPDQSAADRAIDKL 57
L + NL + E +R LF Q + +A+ + G+AFV + D+ A +A D+L
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRDCAIKARDRL 263
Query: 58 HGYSFCGLPLIVE 70
GY + L L E
Sbjct: 264 DGYGWNNLILRCE 276
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 28.7 bits (61), Expect = 0.20
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQ--NLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHG 59
N +Y+GNLP E ++ LF+ Q + + G FV+F + A A+ L G
Sbjct: 426 NTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNLQG 485
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 28.7 bits (61), Expect = 0.20
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYSF 62
+L++G +P + + F + + + G + FV+ D A ++ G F
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYG-QILDCKLMNG-FGFVEVEDARDARDIVNDFQGKEF 62
Query: 63 CGLPLIVEPSVANKK 77
G ++VEP+ ++
Sbjct: 63 MGSRIVVEPARGERR 77
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 28.7 bits (61), Expect = 0.20
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQN--------LTVAEISVKRGGYAFVDFPDQSAADRAID 55
+++G+L V+E V LFA + +T + +V RG Y FV F D++ A+
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRG-YGFVRFTDENDQKSALA 246
Query: 56 KLHGYSFCG 64
++ G CG
Sbjct: 247 EMQG-QICG 254
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 28.3 bits (60), Expect = 0.27
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGG-------YAFVDFPDQSAADRAIDK 56
LY+G LP+ E +R F++ V + + R YAF++F A+ +
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFG-PVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAET 165
Query: 57 LHGYSFCG 64
+H Y G
Sbjct: 166 MHNYLLYG 173
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 28.3 bits (60), Expect = 0.27
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAE-----QNLTVAEISVKRGGYAFVDFPDQSAADRAIDKL 57
+L++GNL +V++ ++ Q F+E + V + K G+ FV F D +A +
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREK 90
Query: 58 HGYSFCGLPLIVEPSVANKK 77
+G P+ + + ++ K
Sbjct: 91 NGKYIGSRPVKLSRATSDVK 110
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.9 bits (59), Expect = 0.35
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG------GYAFVDFPDQSAADRAI 54
+++G L + VD+ + Q F E V + G GY +VDF AA A+
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV 321
>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 27.1 bits (57), Expect = 0.62
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVK--RGGYAFVDFPDQSAAD 51
++ I L + + + +L+ + + T E++V R GYA D+P Q A D
Sbjct: 256 RIDIAELNSLIHDKSSNKLYMKTSFTTYEVAVVYYRVGYALDDYPSQEAWD 306
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 27.1 bits (57), Expect = 0.62
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE----QNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHG 59
LYI NLP +E+ + LF N + + + G F D+ A+ I+K +
Sbjct: 386 LYISNLPLHWNESDISTLFKPSKIISNRVLRDSKEQSRGVGFARMQDRKTAEDIINKFNN 445
Query: 60 Y 60
+
Sbjct: 446 F 446
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 26.6 bits (56), Expect = 0.82
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG---------GYAFVDFPDQSAADRAI 54
L++G+L +D ++QL+A N V + V R Y FV F +AA+RA+
Sbjct: 87 LWMGDLEPWMDATFIQQLWASLNEPV-NVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145
Query: 55 DK 56
K
Sbjct: 146 MK 147
Score = 23.8 bits (49), Expect = 5.8
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 39 YAFVDFPDQSAADRAIDKLHGYSFCGLPLIVEPSVANKK 77
Y FV F + A+ + GY G PL + SVA+ K
Sbjct: 226 YGFVRFSSEKEQQHALMHMQGYLCQGRPLRI--SVASPK 262
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 26.6 bits (56), Expect = 0.82
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFA-EQNLTVAEISVK-RGGYAFVDFPDQSAADRAIDKLHG 59
N +Y+GNL E +R F+ E+ +K FV+F + A +A++K+ G
Sbjct: 602 NTIYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSPMCFVEFEEVCHAAKAMEKMQG 661
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 26.2 bits (55), Expect = 1.1
Identities = 16/55 (29%), Positives = 23/55 (41%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLH 58
LY+ NLP +A+ LF+ + A V + S+A A D LH
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWMLSPDNSAIVSYESLSSAIVARDALH 56
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 26.2 bits (55), Expect = 1.1
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE--QNLTVA----EISVKRGGYAFVDFPDQSAADRAIDKL 57
+++GNL V E+ + F + ++VA E +V R YAFV+F + A A++ +
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRS-YAFVEFDEPEDAKEAMENM 66
Query: 58 HGYSFCGLPLIVEPS 72
+ C + V P+
Sbjct: 67 NYSILCDRCIRVSPA 81
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 1.4
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKR------GGYAFVDFPDQSAADRAID 55
+K+YI NLP + E V +L ++ +K G+ F +F + S A+ AI
Sbjct: 310 DKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAIS 369
Query: 56 KLHG 59
L G
Sbjct: 370 GLDG 373
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 1.4
Identities = 12/53 (22%), Positives = 26/53 (49%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDK 56
+++ N+P E + +++ + A +R G A+VDF + A++K
Sbjct: 317 VFVKNIPPETSDVSLKSAMSIFGPVKAIEFARRKGTAYVDFVNHECVQLALNK 369
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 1.9
Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLT-----VAEISVKRG-GYAFVDFPDQSAADRAI 54
+++GNL +E +E + + F + V + G G+A++ F D D+A+
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKAL 328
>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 445
Score = 25.0 bits (52), Expect = 2.5
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYA 40
KL + P VDE ++ ++ LTV ++ + G YA
Sbjct: 388 KLLVNGEPQNVDETRASEILSQDELTV-DVDLGCGPYA 424
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 24.6 bits (51), Expect = 3.3
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 34 VKRGGYAFVDFPDQSAADRAIDKLHGYSFCGLPLIVEPSVANKKMVN-VPNLERSS 88
V + Y FV F RA++ G G L +E S KK N + N+++ S
Sbjct: 394 VLKANYGFVQFFTNEDCARALNAEQGNFVRGQKLHLEISKIQKKYQNQIENMKKGS 449
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 24.2 bits (50), Expect = 4.4
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 12 EVDEAAVRQLFAEQNLTVAEISVKRG 37
+ ++ +RQ+F +QN+ V +I+ + G
Sbjct: 35 KAEDQLLRQIFDDQNIAVNQITKRNG 60
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 24.2 bits (50), Expect = 4.4
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQN-----LTVAEISVKRGGYAFVDFPDQSAADRAIDKLH 58
L+IGN+P E+D+ + ++ VA+ + F +F RA++ L+
Sbjct: 141 LFIGNIPKELDDFWMDKILRLSGKLASWRRVADADNSMTSFGFAEFESNEQFSRALEALN 200
Query: 59 GY 60
+
Sbjct: 201 DF 202
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 23.8 bits (49), Expect = 5.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 38 GYAFVDFPDQSAADRAIDKLHG 59
GY FV F AA RA D L+G
Sbjct: 426 GYGFVAFRQIEAAVRAKDTLNG 447
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 23.8 bits (49), Expect = 5.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 8 NLPYEVDEAAVRQLFAEQNLTVAEISVKRG 37
NL +DE + + FAE + ++E+ KRG
Sbjct: 174 NLQMGLDEPNIIEGFAEGHANLSELKPKRG 203
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 23.4 bits (48), Expect = 7.6
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 21 LFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYSFCGLP 66
L E N+ +A + + F D S + D LHG S C P
Sbjct: 505 LSKEANVQLANLFLTPNSLETKKFSDNSQGEEISDNLHGES-CNNP 549
>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 329
Score = 23.4 bits (48), Expect = 7.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 12 EVDEAAVRQLFAEQNLTVAEI 32
E DE +R F E +L VAE+
Sbjct: 156 ETDELQMRSFFQEGDLLVAEV 176
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.133 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 471,597
Number of Sequences: 5004
Number of extensions: 17014
Number of successful extensions: 82
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 51
Number of HSP's gapped (non-prelim): 44
length of query: 105
length of database: 2,362,478
effective HSP length: 63
effective length of query: 42
effective length of database: 2,047,226
effective search space: 85983492
effective search space used: 85983492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 48 (23.4 bits)
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