Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000515-TA|BGIBMGA000515-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(105 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 50 3e-07
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 46 8e-06
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 43 4e-05
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 43 4e-05
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 41 2e-04
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 2e-04
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 40 3e-04
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 3e-04
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 40 4e-04
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.001
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.002
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 38 0.002
SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28) 37 0.003
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 37 0.003
SB_16080| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.004
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 37 0.004
SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.011
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.015
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 34 0.026
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 33 0.034
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 33 0.034
SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.034
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.045
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.045
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.045
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 33 0.060
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.060
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 32 0.10
SB_43267| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.10
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 31 0.14
SB_54426| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.14
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.18
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.32
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.32
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 30 0.42
SB_9670| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.42
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 30 0.42
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.42
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 29 0.74
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.74
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.74
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.3
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.7
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.2
SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13) 27 3.0
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 27 3.9
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 27 3.9
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33) 26 5.2
SB_2275| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.2
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 26 6.9
SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28) 26 6.9
SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.1
SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.1
SB_50855| Best HMM Match : Ras (HMM E-Value=0) 25 9.1
SB_47133| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.1
SB_26185| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.1
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 50.4 bits (115), Expect = 3e-07
Identities = 25/99 (25%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISV------KRGGYAFVDFPDQSAADRAI 54
+ +++GN+PYE E ++++F+E ++ V K GY F ++ DQ A A+
Sbjct: 24 LRSVFVGNIPYEASEEQLKEIFSEVGPVISFRLVFDRETGKPKGYGFCEYKDQETALSAM 83
Query: 55 DKLHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLN 93
L+GY G L V+ + + K + ++E ++ +++
Sbjct: 84 RNLNGYELNGRALRVDSAASEKNKEEIKSMEMTARPEVS 122
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 45.6 bits (103), Expect = 8e-06
Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 8/76 (10%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISV-------KRGGYAFVDFPDQSAADRAID 55
+LY+G+L + + EA V+ +F E TV + + + GY FV F + AA RA++
Sbjct: 243 RLYVGSLHFNITEAMVKAVF-EPFGTVDSVQLIYDSETNRSKGYGFVQFREAEAAKRAME 301
Query: 56 KLHGYSFCGLPLIVEP 71
+++G+ G PL + P
Sbjct: 302 QMNGFELAGRPLKIGP 317
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 38 GYAFVDFPDQSAADRAIDKLHGYSFCGLPLIVEPSVANK 76
G A+++F D+SA AI L G G P++V + A K
Sbjct: 188 GIAYIEFTDKSAVPLAIG-LSGQKLLGAPIMVMLTQAEK 225
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 43.2 bits (97), Expect = 4e-05
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYSF 62
++Y+G LPY E VR+ F + +I++K Y FV+F D AD A+ + +G
Sbjct: 4 RVYLGRLPYGTTEDDVRRFFRSYG-RLRDINLKNN-YGFVEFEDDRDADDAVYECNGKEM 61
Query: 63 CGLPLIVEPS 72
G ++VE S
Sbjct: 62 LGERILVEHS 71
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 43.2 bits (97), Expect = 4e-05
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-----GYAFVDFPDQSAADRAIDKL 57
+ YIGNL Y VDE A+ + F ++ ++ R G+ FV F + ++AID+
Sbjct: 6 RCYIGNLSYSVDEQALEEKFHGCDVVDVKVITDRETGRPRGFGFVTFGSKEEMEKAIDEF 65
Query: 58 HGYSFCGLPLIV 69
G F G P+ V
Sbjct: 66 DGQDFDGRPMKV 77
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 41.1 bits (92), Expect = 2e-04
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-------GYAFVDFPDQSAADRAIDK 56
L+IGNL EVDE + F+ + + + R G+AF++F A+D AI+
Sbjct: 102 LFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFINFASFDASDAAIEA 161
Query: 57 LHGYSFCGLPLIVEPSVANKK 77
++G C P+ V S A KK
Sbjct: 162 MNGQYLCNRPITV--SYAFKK 180
Score = 37.9 bits (84), Expect = 0.002
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVA------EISVKRGGYAFVDFPDQSAADRAIDKL 57
+Y+G L +V EA + +LF + V I+ GY FV+F + AD AI +
Sbjct: 15 IYVGGLDEKVSEALIWELFLQSGPVVNVHMPKDRITQLHQGYGFVEFLGEEDADYAIKVM 74
Query: 58 HGYSFCGLPLIVEPSVANKKMVNV 81
+ G P+ V + A+ K ++V
Sbjct: 75 NMIKVYGKPIRVNKASAHNKNLDV 98
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISV--------------KRGGYAFVDFPDQ 47
NK+Y GNLP+++ + ++ +F ++LTV ++ + + G+ FV F +
Sbjct: 50 NKVYAGNLPFKLTQDELKAVFEAESLTVTDVLIVKEPRNEFYQQQEPRSRGFGFVTFANP 109
Query: 48 SAADRAIDKLHGYSFCGLPLIVEPSVA 74
A A+ L+G G L + PS++
Sbjct: 110 EDAQTAVKSLNGKEVQGRTLKIAPSIS 136
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 40.3 bits (90), Expect = 3e-04
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG--GYAFVDFPDQSAADRAIDKLHGY 60
KLY+GNL D + + + F E+ ++++ V R G+AFV++ D A+ A+ +L G
Sbjct: 5 KLYVGNLGRNADSSELERAF-EKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVRELDGA 63
Query: 61 SFCGLPLIVE 70
+ C + VE
Sbjct: 64 NVCDRTIRVE 73
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 40.3 bits (90), Expect = 3e-04
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 2 NKLYIGNLPYEVDEAAVRQL---FAEQ---NLTVAEISVKRGGYAFVDFPDQSAADRAID 55
+K++IG LP ++E V++L F E NL + GYAF ++ D D AI
Sbjct: 673 HKIFIGGLPNYLNEDQVKELLSSFGELRAFNLVKDSATGLSKGYAFCEYVDLGITDVAIQ 732
Query: 56 KLHGYSFCGLPLIVE-PSVANKKMVNVPNLERSSAAQL 92
L+G LIV+ SV K+ +N P AQL
Sbjct: 733 GLNGMQLGDKKLIVQRASVGAKQNLNNPQAMNMVPAQL 770
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 39.9 bits (89), Expect = 4e-04
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVK--RGG---YAFVDFPDQSAADRAIDKL 57
++Y+GNLP +V E + +F + +A++ +K RG +AFV+F D A+ A+
Sbjct: 262 RVYVGNLPQDVREKDLHDIFYKYG-HIADVDLKNRRGAGPPFAFVEFEDPRDAEDAVKGR 320
Query: 58 HGYSFCGLPLIVE 70
G+ F G + VE
Sbjct: 321 DGHEFDGYRIRVE 333
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 38.7 bits (86), Expect = 0.001
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKR-----GGYAFVDFPDQSAADRAIDKL 57
K YIGNL ++V+EA ++ F+ ++ ++ R G+AFV F + + AI++L
Sbjct: 231 KCYIGNLDFKVNEADLQDRFSRYDVVDVQVISDRETQRPRGFAFVTFGSKKNMEDAINEL 290
Query: 58 HGYSFCG 64
G F G
Sbjct: 291 DGQEFDG 297
Score = 29.5 bits (63), Expect = 0.56
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 38 GYAFVDFPDQSAADRAIDKLHGYSFCGLPLIV 69
G+ FV F + D+AIDK G G P+ V
Sbjct: 51 GFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKV 82
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 37.9 bits (84), Expect = 0.002
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLT-VAEISVKRG---GYAFVDFPDQSAADRAIDKLHG 59
+++GNL ++ DE + F E+ L+ + + G G+ + DF + ++A++ L+G
Sbjct: 182 VFLGNLSFDADEETLAAFFEEKGLSATCRVITQEGRSRGFGYADFTSKEDYNKALE-LNG 240
Query: 60 YSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGSNGSPSGG 103
CG + + P+ +K N R G G SGG
Sbjct: 241 EDCCGREIRINPA-NSKPSRGGGNTPRGGGR--GRGGRGGFSGG 281
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 37.5 bits (83), Expect = 0.002
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 9 LPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYSFCGLPLI 68
LP +V E+ V + F + +IS+KRG Y FV+F D A+ A+ L+G G ++
Sbjct: 696 LPRDVRESDVEK-FLRGYGKIRDISLKRG-YGFVEFDDHRDAEDAVHDLNGRDLIGERVV 753
Query: 69 VE 70
VE
Sbjct: 754 VE 755
>SB_47990| Best HMM Match : RRM_1 (HMM E-Value=7.8e-28)
Length = 440
Score = 37.1 bits (82), Expect = 0.003
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYSF 62
K+Y G LP E + L V E+ K G YA+V F + ADRA+ L+ F
Sbjct: 4 KVYCGRLPATATEKDLENLVKVFG-KVREVDFKEG-YAYVVFKENKDADRAVAALNNSEF 61
Query: 63 CGLPLIVE 70
G +++E
Sbjct: 62 HGAKILME 69
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 37.1 bits (82), Expect = 0.003
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 2 NKLYIGNLPYEVDEAAVRQLF-AEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGY 60
N++Y+G LPY E V++ F + EI +K GY FV+F A+ A+ + +G
Sbjct: 3 NRVYLGRLPYGTREDDVKKFFYTYGRFKIREIILK-DGYGFVEFDYSDDAEDAVYECNGK 61
Query: 61 SFCG 64
G
Sbjct: 62 KMLG 65
>SB_16080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 36.7 bits (81), Expect = 0.004
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 4 LYIGNLPYEVDEAAVRQLFA--EQN----LTVAEISVKRGGYAFVDFPDQSAADRAIDKL 57
L++ NL +V E + +LF +QN L + + G AFV FPD A +A +
Sbjct: 116 LFLKNLSNKVKEEDLIRLFLRFQQNGAPKLVFRLMKGRMKGQAFVTFPDSEVAIKAHSLV 175
Query: 58 HGYSFCGLPLIVE 70
+GY G P+I+E
Sbjct: 176 NGYRLKGRPVIIE 188
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 36.7 bits (81), Expect = 0.004
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-------GYAFVDFPDQSAADRAIDK 56
+Y+G++P+ E +++ F EQ TV I + R GYAFV+F A A D
Sbjct: 100 IYLGHIPHGFFENEIKKFF-EQFGTVNRIRLSRSKKSARSKGYAFVEFACDEVAKIAADT 158
Query: 57 LHGYSFCG 64
+H Y G
Sbjct: 159 MHNYMMFG 166
>SB_28089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 35.1 bits (77), Expect = 0.011
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYSF 62
++Y G LP + E + + F V EIS+K G Y FV+F D AD + L+G +
Sbjct: 6 RVYFGRLPRDCRERDLEK-FVRGYGRVREISMKLG-YGFVEFDDYRDADDCVYDLNGRNL 63
Query: 63 CG 64
G
Sbjct: 64 LG 65
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 34.7 bits (76), Expect = 0.015
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLT-----VAEISVKRGGYAFVDFPDQSAADRAI 54
L++ NLP++ E+ + +LF++ + V + K GY +V++ +S+A A+
Sbjct: 173 LFVSNLPFDAKESEIEELFSKHGVVKQVRLVTNRAGKPKGYGYVEYEQESSASTAV 228
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 33.9 bits (74), Expect = 0.026
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKR-----GGYAFVDFPDQSAADRAIDK 56
++ YIGNL Y VDE A+ + F + N+ + R G+ FV + + +
Sbjct: 82 HRCYIGNLSYSVDEQALEEKFHDCNVVDVRVITDRETGRPRGFGFVTLEAKKTRIKPLKN 141
Query: 57 LHGYS--FCGLPLIVEPSVANKKMVNVPNLERSSAAQLNE-GSNGSPSGGWR 105
L S + + I S+A ++ ++ + A NE G GS GG+R
Sbjct: 142 LTDRSGHYVHVCEIQTVSLALDVDLDGRPMKVNKAQNRNERGGGGSQGGGYR 193
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 33.5 bits (73), Expect = 0.034
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAE-----QNLTVAE-ISVKRGGYAFVDFPDQSAADRA 53
KL++G +PYE + A+R+ FA+ + + + + ++ K GY FV AA+ A
Sbjct: 11 KLFVGGIPYESGDDALRKFFAQFGEIREAVVIKDRVTKKSKGYGFVTMATSDAAELA 67
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 33.5 bits (73), Expect = 0.034
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQ------NLTVAEISVKRGGYAFVDFPDQSAADRAI 54
+ KL++G L YE + ++++ F++ ++ + ++ + G+AFV F QS AD AI
Sbjct: 28 IGKLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFAFVQFKHQSEAD-AI 86
Query: 55 D 55
D
Sbjct: 87 D 87
>SB_12447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 326
Score = 33.5 bits (73), Expect = 0.034
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 38 GYAFVDFPDQSAADRAIDKLHGYSFCGLPLI 68
G AFV P + A RA+ ++HGY G P++
Sbjct: 293 GQAFVTLPSEEKAKRALREVHGYMLHGKPIV 323
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 33.1 bits (72), Expect = 0.045
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG--GYAFVDFPDQSAADRAIDKLH 58
M+++YIGN+ + + + F E + ++ V R G+AF F D+ A+ A+ +L
Sbjct: 1 MSRVYIGNIGDNASKREIEREF-ETFGPLRDVWVARNPPGFAFCVFEDRRDAEDAVRELD 59
Query: 59 GYSFCGLPLIVE 70
G CG VE
Sbjct: 60 GRYICGQRARVE 71
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 33.1 bits (72), Expect = 0.045
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG--GYAFVDFPDQSAADRAIDKLH 58
M K+YIG+L + + F + ++ V R G+AF F D+ A+ A+ +L
Sbjct: 31 MTKVYIGSLGDNASKREIENEFGYYG-PLKDVWVARNPPGFAFCIFDDRRDAEDAVRELD 89
Query: 59 GYSFCGLPLIVE 70
G CG + VE
Sbjct: 90 GRYICGQRVRVE 101
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 33.1 bits (72), Expect = 0.045
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEI-----SVKRGGYAFVDFPDQSAADRAIDKL 57
KLYIGNL + DE + Q F E + +I S + G+ FV AI+K+
Sbjct: 10 KLYIGNLNFNSDEGEIEQAFEEFGVEKVDILRDKESGRSRGFGFVLLQSADQIAPAIEKM 69
Query: 58 HGYSFCGLPLIV 69
+ S G + V
Sbjct: 70 NQSSVGGRNITV 81
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 32.7 bits (71), Expect = 0.060
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAE 31
K+Y GNLP+ +++ ++RQLF + V E
Sbjct: 10 KVYAGNLPFSLNDDSLRQLFEDSGFKVVE 38
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 32.7 bits (71), Expect = 0.060
Identities = 17/65 (26%), Positives = 39/65 (60%), Gaps = 6/65 (9%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFA------EQNLTVAEISVKRGGYAFVDFPDQSAADRAI 54
M ++Y+G++ +E+ E +R F + +L+ +++K G+AFV++ AA A+
Sbjct: 101 MCRVYVGSINFELREEHIRTAFHPFGPINKIDLSWDPLNMKHKGFAFVEYDLPEAAQLAL 160
Query: 55 DKLHG 59
++++G
Sbjct: 161 EQMNG 165
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 31.9 bits (69), Expect = 0.10
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE-QNLTVAEI--SVKRG---GYAFVDFPDQSAADRAIDKL 57
++IGNLP++++E +R+LF N+ + K G G+ +V F + A A+ K+
Sbjct: 58 VFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTGIGKGFGYVLFESKDAVVFAL-KM 116
Query: 58 HGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGSNGSPS 101
+ F G + V PS + P E S Q+ N +PS
Sbjct: 117 NNAEFKGRKIRVFPS------KDKPQTEFISHIQVRFRDNANPS 154
>SB_43267| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 37
Score = 31.9 bits (69), Expect = 0.10
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAE 31
NK+Y GNLP+++ + ++ +F ++LTV +
Sbjct: 7 NKVYAGNLPFKLTQDELKAVFEAESLTVTD 36
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 31.5 bits (68), Expect = 0.14
Identities = 20/63 (31%), Positives = 28/63 (44%)
Query: 8 NLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYSFCGLPL 67
NLPY + +R LF+ I G A ++ P+ S A +A KL F PL
Sbjct: 430 NLPYGTNAEELRTLFSAFGQLGRVILPPSGITALIEIPEPSLARKAFQKLAYSKFKNSPL 489
Query: 68 IVE 70
+E
Sbjct: 490 YLE 492
>SB_54426| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 32
Score = 31.5 bits (68), Expect = 0.14
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNL 27
NK YIGNL Y VDE A+ F N+
Sbjct: 4 NKCYIGNLSYSVDEQALEDKFHGYNV 29
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 31.1 bits (67), Expect = 0.18
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAI--DKLHG 59
+Y+GNLP +V + ++Q+F++ + GYAF++ + R + + HG
Sbjct: 617 VYVGNLPPDVKDYELQQMFSQYGSILETKVFADKGYAFINARGEKRRQRCLTSSRRHG 674
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 30.3 bits (65), Expect = 0.32
Identities = 15/69 (21%), Positives = 33/69 (47%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYS 61
++L+I P + ++ +F+ + +K + + F + +AD AI LHG+
Sbjct: 338 SRLFIVCNPAPPPDHVLKDVFSRFGNLIDVWMMKERNFGYAKFAAKQSADAAIQGLHGHD 397
Query: 62 FCGLPLIVE 70
G+ L ++
Sbjct: 398 VLGMKLKID 406
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 30.3 bits (65), Expect = 0.32
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE-----QNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLH 58
LYI LP ++ E V LF + + ++S + G FV F + A AID L+
Sbjct: 115 LYISGLPKDMKEEEVEALFKPFGKIITSKVLKDVSGEGRGTGFVRFDKRCEAQTAIDDLN 174
Query: 59 GYSFCGLPLIVEPSVANKKMVNVPNLERSSA 89
+ G + + AN P + S A
Sbjct: 175 NKTLPGTNVKLTVKFANPPNSRQPAMPLSPA 205
Score = 25.4 bits (53), Expect = 9.1
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQ-NLTVAEISVKRG-----GYAFVDFPDQSAADRAIDKL 57
L I +P + + ++++F N+T ++ R GYAFV++ + A++A+ ++
Sbjct: 29 LIINYVPPSMSQEDIKKIFGTVGNVTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREM 88
Query: 58 HG 59
+G
Sbjct: 89 NG 90
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 29.9 bits (64), Expect = 0.42
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGY 60
+ +Y+ N+P + E ++ +F + + ++ R Y FV F + +A +AID ++G
Sbjct: 1 VKSIYVRNVPLPMSETQLKAVFTKYG-QIEKVRKIRD-YGFVYFAKRESAVQAIDGINGA 58
Query: 61 SFCGLPLIVEPSV 73
G L V ++
Sbjct: 59 YIDGCKLEVSLAI 71
>SB_9670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 29.9 bits (64), Expect = 0.42
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 30 AEISVKRGGYAFVDFPDQSAADRAIDKLHGY 60
A ++VKR Y + D A AID LHGY
Sbjct: 3 ASLTVKRRRYRMKTYEDAFLASEAIDWLHGY 33
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 29.9 bits (64), Expect = 0.42
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNL 27
++ YIGNL Y VDE A+ + F + N+
Sbjct: 4 HRCYIGNLSYSVDEQALEEKFHDCNV 29
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 38 GYAFVDFPDQSAADRAIDKLHGYSFCGLPLIV 69
G+ FV F + ++AID+ G G P+ V
Sbjct: 138 GFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKV 169
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 29.9 bits (64), Expect = 0.42
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-------GYAFVDFPDQSAADRAI 54
+Y+GNLPY + + + ++F E+ V ++++ R G AF+ F D+ +A A+
Sbjct: 12 VYVGNLPYSLTNSDLHKVF-ERYGKVVKVTILRDKETRESRGVAFILFIDRQSAQNAV 68
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 29.1 bits (62), Expect = 0.74
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 6 IGNLPYEVDEAAVRQLFAEQN------LTVAEISVKRGGYAFVDFPDQSAADRAIDKLHG 59
+ NL E E+ +++LF L + + + G+AF++F + A RAI+ L G
Sbjct: 185 VTNLSEETRESDLQELFRPLGPISRIFLAKDKFTNQSKGFAFINFVHREDAARAIEVLSG 244
Query: 60 YSFCGLPLIVE 70
+ + L L VE
Sbjct: 245 FGYDHLILNVE 255
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 29.1 bits (62), Expect = 0.74
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 38 GYAFVDFPDQSAADRAIDKLHGYS 61
G+ FVD+ A +AIDKL+G++
Sbjct: 89 GFGFVDYNTTEDAQKAIDKLNGFT 112
Score = 27.1 bits (57), Expect = 3.0
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 4 LYIGNLPYEVDEAAVRQLF-AEQNLTVAEISVKRG-----GYAFVDFPDQSAADRAIDKL 57
LY+ N+P ++ EA R+ F A N+ + + G FV + ++ A AI L
Sbjct: 135 LYVCNIPKQLPEAEFRKAFEAYGNIVNCRLLRDKSTGLPKGCGFVLYDKKAEAQAAISSL 194
Query: 58 HGYSFCG--LPLIVEPSVANKKMVNVPN 83
G F G + L + + N V PN
Sbjct: 195 SGTFFPGSTMGLQIRYADDNSAKVRPPN 222
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 29.1 bits (62), Expect = 0.74
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDK 56
LY+G L +V E +R F + + V R AFV F ++AA+ A D+
Sbjct: 306 LYVGGLEGKVTEQDLRDHFYQFGELRSISMVPRQNCAFVCFTSRAAAEAAADR 358
>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 29 VAEISVKRGGYAFVDFPDQSAADRAIDKLHGYSFCGLPLIVE 70
VA ++K G AFV F D +A A+ + G+ F P+ ++
Sbjct: 41 VALKTLKMRGQAFVVFKDIGSATNALRSMQGFPFYDKPMRIQ 82
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 27.9 bits (59), Expect = 1.7
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQN------LTVAEISVKRGGYAFVDFPDQSAADRAIDKL 57
L++GNLP+E E L + L +E++ GY FV++ + A +A +L
Sbjct: 115 LFVGNLPFEFTETQFGDLMSPYGNIERLFLVRSEVTGDSKGYGFVEYATRENAMQAKQQL 174
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 27.5 bits (58), Expect = 2.2
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE----QNLTVAEISVKRG---GYAFVDFPDQSAADRAIDK 56
L++ N+ E E + +LF++ +NL V + + G GYA V++ A A++
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHV-NLDRRTGFIKGYALVEYETFKEAQSALEA 353
Query: 57 LHGYSFCGLPLIVE 70
L+G G + V+
Sbjct: 354 LNGAEMLGQNISVD 367
>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
Length = 1463
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/61 (22%), Positives = 28/61 (45%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYSFC 63
+++G+L V + ++ +F E + + G A++ + A RA+DKL
Sbjct: 543 IWVGHLAKIVTQDTLQGIFEEHGTITSIDLIPPRGCAYIQMEKREDAYRALDKLRNIKLY 602
Query: 64 G 64
G
Sbjct: 603 G 603
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/60 (21%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG----GYAFVDFPDQSAADRAIDK 56
+ K++IG L + E ++ F++ V + +KR G+ FV + + + + K
Sbjct: 49 LRKIFIGGLNWNTTEEGLKDYFSQWGTIVDCVIMKRDGRSRGFGFVTYESSDSVNEVLKK 108
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 26.6 bits (56), Expect = 3.9
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQ-NLTVAEI-----SVKRGGYAFVDFPDQSAADRAIDK 56
+++ G+L EV + ++ + FA+ + A+I S K GY FV F D + +A+ +
Sbjct: 218 RIFCGDLGSEVTDESLTRAFAKYTSFLKAKIVRDKKSNKSKGYGFVSFKDPNDFIKAMRE 277
Query: 57 LHGYSFCGLPLI 68
++ SF L+
Sbjct: 278 MNVLSFADQHLL 289
>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
Length = 662
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAEI 32
++++IGNLP V +A V ++F++ T+ EI
Sbjct: 357 HQVFIGNLPSGVKDADVNEVFSKYG-TILEI 386
>SB_2275| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 27
Score = 26.2 bits (55), Expect = 5.2
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 7 GNLPYEVDEAAVRQLFAE 24
GN+PYE E ++++F+E
Sbjct: 2 GNIPYEASEEQLKEIFSE 19
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 25.8 bits (54), Expect = 6.9
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISV--KRG---GYAFVDFPDQSAADRAIDKL 57
++++ E E+ +R F E + V K G GYAF+ F Q AD D
Sbjct: 9 RIFVKGFNRETTESELRAFFEEYGVVKESKIVRDKHGVSKGYAFITFESQEVADGLRDN- 67
Query: 58 HGYSFCGLPLIVEPSVANK 76
G F L + +V K
Sbjct: 68 KGLDFKDKVLSIGQAVRRK 86
>SB_28139| Best HMM Match : RRM_1 (HMM E-Value=3.7e-28)
Length = 419
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVA 30
LYI NLP DEA + +F++ ++
Sbjct: 181 LYIQNLPQNCDEAMLENMFSKYGKVIS 207
>SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 35 KRGGYAFVDFPDQSAADRAIDKLHG 59
K FV F AAD+AID+++G
Sbjct: 141 KNRSQGFVTFDTWEAADKAIDEMNG 165
>SB_17242| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 25.4 bits (53), Expect = 9.1
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQN-LTVAEISVKRG-------GYAFVDFPDQSAADR 52
KL+IG L E E V+ A + EI + R GY FV+FP++ D+
Sbjct: 105 KLFIGGLKDEHSEEDVKTALAPLSPFAPLEIKMVRDRETNKFKGYCFVNFPNEHIVDK 162
>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
Length = 733
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 5 YIGNLPYEVDEAAVRQLFAE-QNLTVAEISVKRGGYAFVDFPDQSAADR 52
++GNLPY+V+ + + F+ ++L ++ V G+ S +DR
Sbjct: 280 FLGNLPYDVEREDILEFFSSVKSLRGRKVRVDIAGHQQGGGGSDSRSDR 328
>SB_47133| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 27 LTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYSFCGLPLIVEPSVANKKMVNV 81
+T A +V R G F++ PD+ D K + + + V P A +M +
Sbjct: 103 VTTAVTTVVRDGATFIEMPDKDGKDHDWTKQNKGTAMPADIDVTPQEAQSQMQKI 157
>SB_26185| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 37 GGYAFVDFPDQSAADRAIDKLHGYSFCGLPLIVEPSVANKKMVN 80
G + F ++ D A+ RAI LH L+V+ K +++
Sbjct: 86 GSFGFCEYSDPEASLRAIRLLHNLQVGDKSLVVKVDAKTKTLLD 129
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.133 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,349,151
Number of Sequences: 59808
Number of extensions: 114526
Number of successful extensions: 240
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 175
Number of HSP's gapped (non-prelim): 69
length of query: 105
length of database: 16,821,457
effective HSP length: 72
effective length of query: 33
effective length of database: 12,515,281
effective search space: 413004273
effective search space used: 413004273
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 53 (25.4 bits)
- SilkBase 1999-2023 -