GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000515-TA|BGIBMGA000515-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
         (105 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/T...    22   4.1  
AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/T...    22   4.1  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           21   9.4  
AY017417-1|AAG54081.1|  383|Anopheles gambiae arrestin protein.        21   9.4  
AJ459959-1|CAD31058.1|  462|Anopheles gambiae dopachrome convers...    21   9.4  
AJ304409-1|CAC39103.2|  383|Anopheles gambiae arrestin protein.        21   9.4  

>AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative
          Tyr/Ser/Thr phosphatase protein.
          Length = 1977

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 5  YIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG 37
          Y+G     +   +  +LF ++N T AE+SV  G
Sbjct: 48 YLGQTDEGILALSNYRLFLQKNTTGAEVSVPLG 80


>AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative
          Tyr/Ser/Thr phosphatase protein.
          Length = 1978

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 5  YIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG 37
          Y+G     +   +  +LF ++N T AE+SV  G
Sbjct: 48 YLGQTDEGILALSNYRLFLQKNTTGAEVSVPLG 80


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 83  NLERSSAAQLNEGSNGSPSG 102
           NL+RS A   +  +NGS SG
Sbjct: 882 NLDRSEAGGRSLCTNGSSSG 901


>AY017417-1|AAG54081.1|  383|Anopheles gambiae arrestin protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/21 (42%), Positives = 9/21 (42%)

Query: 82  PNLERSSAAQLNEGSNGSPSG 102
           PN   S   Q  E  NG P G
Sbjct: 121 PNAPSSVTLQQGEDDNGDPCG 141


>AJ459959-1|CAD31058.1|  462|Anopheles gambiae dopachrome conversion
           enzyme protein.
          Length = 462

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 59  GYSFCGLPLIVEPSVANKKMVNVPNLE 85
           GY    + L V+PS   K  V + +L+
Sbjct: 177 GYGLTSITLDVDPSDCEKVFVYISDLQ 203


>AJ304409-1|CAC39103.2|  383|Anopheles gambiae arrestin protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/21 (42%), Positives = 9/21 (42%)

Query: 82  PNLERSSAAQLNEGSNGSPSG 102
           PN   S   Q  E  NG P G
Sbjct: 121 PNAPSSVTLQQGEDDNGDPCG 141


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.315    0.133    0.386 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,333
Number of Sequences: 2123
Number of extensions: 3634
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 105
length of database: 516,269
effective HSP length: 55
effective length of query: 50
effective length of database: 399,504
effective search space: 19975200
effective search space used: 19975200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)