Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000515-TA|BGIBMGA000515-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(105 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 48 2e-06
Z66521-9|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 46 4e-06
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 45 9e-06
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 45 9e-06
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 44 3e-05
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 44 3e-05
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 44 3e-05
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 44 3e-05
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 43 4e-05
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 43 4e-05
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 43 4e-05
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 40 5e-04
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 40 5e-04
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 40 5e-04
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 39 6e-04
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 39 6e-04
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 39 6e-04
Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical pr... 38 0.001
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 38 0.001
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 38 0.001
U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein. 38 0.001
Z78536-3|CAB01717.1| 270|Caenorhabditis elegans Hypothetical pr... 37 0.002
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 37 0.002
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 37 0.003
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 37 0.003
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 37 0.003
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 37 0.003
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 36 0.004
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 36 0.004
U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna bi... 36 0.007
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 35 0.013
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 35 0.013
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 35 0.013
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 34 0.023
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 34 0.023
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 34 0.023
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 33 0.030
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 33 0.040
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 33 0.040
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 33 0.040
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 33 0.040
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 33 0.040
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 33 0.040
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 33 0.040
AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical ... 33 0.052
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 32 0.069
AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical... 32 0.091
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 31 0.12
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 31 0.12
AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical ... 31 0.12
AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical ... 31 0.12
AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical ... 31 0.12
Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical pr... 31 0.21
Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical pr... 31 0.21
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 31 0.21
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 31 0.21
Z81521-1|CAB04226.1| 319|Caenorhabditis elegans Hypothetical pr... 30 0.28
Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical pr... 30 0.28
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 30 0.28
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 30 0.28
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 30 0.37
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 30 0.37
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 29 0.49
AC006663-2|AAF39900.2| 603|Caenorhabditis elegans Hypothetical ... 28 1.1
Z68880-1|CAA93098.1| 652|Caenorhabditis elegans Hypothetical pr... 28 1.5
AL132877-16|CAC70111.1| 628|Caenorhabditis elegans Hypothetical... 28 1.5
AC025726-27|AAK73932.2| 383|Caenorhabditis elegans Hypothetical... 28 1.5
U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna bi... 27 2.0
AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya bi... 27 2.0
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 27 2.6
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 27 3.4
AC024793-5|AAF60689.1| 79|Caenorhabditis elegans Hypothetical ... 27 3.4
AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom... 27 3.4
Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical pr... 26 4.5
Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical pr... 26 4.5
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 26 4.5
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 26 4.5
Z80216-9|CAH10778.1| 403|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z80216-8|CAB02284.2| 261|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical pr... 26 6.0
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 26 6.0
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 26 6.0
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 26 6.0
Z36948-5|CAD30435.1| 453|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z36948-4|CAA85411.3| 615|Caenorhabditis elegans Hypothetical pr... 25 7.9
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQN--LTVAEI----SVKRGGYAFVDFPDQSAADRAIDKL 57
+++GN+ Y+V E +R +F++ L++ + + K GY F++FPD A+ AI L
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79
Query: 58 HGYSFCGLPLIVEPSVANKKM 78
+GY G L V+ + M
Sbjct: 80 NGYELSGRILRVDSAAGGMNM 100
>Z66521-9|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 46.4 bits (105), Expect = 4e-06
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGY 60
M ++YIG LP + V F ++++ +K G + FVDF DQ AD A+ L+G
Sbjct: 1 MVRVYIGRLPNRASDRDVEHFFRGYG-KLSDVIMKNG-FGFVDFQDQRDADDAVHDLNGK 58
Query: 61 SFCGLPLIVE 70
CG +I+E
Sbjct: 59 ELCGERVILE 68
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 45.2 bits (102), Expect = 9e-06
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQN-LTVAEISVKRG-GYAFVDFPDQSAADRAIDKLHGY 60
K+Y+GNLP +V E V +F + + +I RG +AFV+F D A+ A+ GY
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 61 SFCGLPLIVE 70
F G + VE
Sbjct: 70 EFDGRRIRVE 79
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 45.2 bits (102), Expect = 9e-06
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQN-LTVAEISVKRG-GYAFVDFPDQSAADRAIDKLHGY 60
K+Y+GNLP +V E V +F + + +I RG +AFV+F D A+ A+ GY
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 61 SFCGLPLIVE 70
F G + VE
Sbjct: 70 EFDGRRIRVE 79
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 43.6 bits (98), Expect = 3e-05
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQN-LTVAEISV-KRG---GYAFVDFPDQSAADRAIDK 56
NK++IG LP + E V++L L ++V +G GYAF ++ D + D+AI
Sbjct: 291 NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAG 350
Query: 57 LHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAA 90
L+G L+V+ + AN++ N NL S++A
Sbjct: 351 LNGMQLGDKQLVVQLACANQQRHNT-NLPNSASA 383
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQ 25
+LY+GN+P+ +E A+ F +Q
Sbjct: 185 RLYVGNIPFGCNEEAMLDFFNQQ 207
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 43.6 bits (98), Expect = 3e-05
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQN-LTVAEISV-KRG---GYAFVDFPDQSAADRAIDK 56
NK++IG LP + E V++L L ++V +G GYAF ++ D + D+AI
Sbjct: 291 NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAG 350
Query: 57 LHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAA 90
L+G L+V+ + AN++ N NL S++A
Sbjct: 351 LNGMQLGDKQLVVQLACANQQRHNT-NLPNSASA 383
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQ 25
+LY+GN+P+ +E A+ F +Q
Sbjct: 185 RLYVGNIPFGCNEEAMLDFFNQQ 207
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 43.6 bits (98), Expect = 3e-05
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQN-LTVAEISV-KRG---GYAFVDFPDQSAADRAIDK 56
NK++IG LP + E V++L L ++V +G GYAF ++ D + D+AI
Sbjct: 266 NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAG 325
Query: 57 LHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAA 90
L+G L+V+ + AN++ N NL S++A
Sbjct: 326 LNGMQLGDKQLVVQLACANQQRHNT-NLPNSASA 358
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQ 25
+LY+GN+P+ +E A+ F +Q
Sbjct: 160 RLYVGNIPFGCNEEAMLDFFNQQ 182
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 43.6 bits (98), Expect = 3e-05
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQN-LTVAEISV-KRG---GYAFVDFPDQSAADRAIDK 56
NK++IG LP + E V++L L ++V +G GYAF ++ D + D+AI
Sbjct: 269 NKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIAG 328
Query: 57 LHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAA 90
L+G L+V+ + AN++ N NL S++A
Sbjct: 329 LNGMQLGDKQLVVQLACANQQRHNT-NLPNSASA 361
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQ 25
+LY+GN+P+ +E A+ F +Q
Sbjct: 163 RLYVGNIPFGCNEEAMLDFFNQQ 185
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 43.2 bits (97), Expect = 4e-05
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQ-NLTVAEISVKRG-----GYAFVDFPDQSAADRAIDKL 57
+Y+GN P++ E + F++ N++ I R G+AFV+F +++AA RA+D+
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVDQF 65
Query: 58 HGYSFCGLPLIV 69
+G F G L V
Sbjct: 66 NGVDFNGRALRV 77
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 43.2 bits (97), Expect = 4e-05
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 8/79 (10%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE----QNLTVA--EISVKRGGYAFVDFPDQSAADRAIDKL 57
+Y+GN P++ E + F+ N+ + + + G+AF++F ++ +A RA++++
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 58 HGYSFCGLPLIVEPSVANK 76
+G F G PL V ++ANK
Sbjct: 67 NGAEFNGRPLRV--NLANK 83
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 43.2 bits (97), Expect = 4e-05
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 8/79 (10%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE----QNLTVA--EISVKRGGYAFVDFPDQSAADRAIDKL 57
+Y+GN+PY+ E + FA N+ + + + G+AFV+F +++ A RA+++L
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQL 67
Query: 58 HGYSFCGLPLIVEPSVANK 76
+G +F G L V + ANK
Sbjct: 68 NGVAFNGRNLRV--NYANK 84
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 39.5 bits (88), Expect = 5e-04
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGY 60
M +LY+G +PY E V + F + + IS+K G +AFVDF D A+ A L G
Sbjct: 1 MPRLYLGKIPYNARERDVER-FLKGYGKINNISMKYG-FAFVDFEDSRDAEDACHDLDGK 58
Query: 61 SFCG--LPLIVE 70
+ G + L+VE
Sbjct: 59 TMEGSSMRLVVE 70
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 39.5 bits (88), Expect = 5e-04
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGY 60
M +LY+G +PY E V + F + + IS+K G +AFVDF D A+ A L G
Sbjct: 1 MPRLYLGKIPYNARERDVER-FLKGYGKINNISMKYG-FAFVDFEDSRDAEDACHDLDGK 58
Query: 61 SFCG--LPLIVE 70
+ G + L+VE
Sbjct: 59 TMEGSSMRLVVE 70
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 39.5 bits (88), Expect = 5e-04
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGY 60
M +LY+G +PY E V + F + + IS+K G +AFVDF D A+ A L G
Sbjct: 1 MPRLYLGKIPYNARERDVER-FLKGYGKINNISMKYG-FAFVDFEDSRDAEDACHDLDGK 58
Query: 61 SFCG--LPLIVE 70
+ G + L+VE
Sbjct: 59 TMEGSSMRLVVE 70
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 39.1 bits (87), Expect = 6e-04
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAE-QNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYS 61
K+Y+G LP + + ++F + ++ + G+AFV++ D A+ A+ L G
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 62 FCGLPLIVEPSVANKK 77
CG+ VE S ++
Sbjct: 64 ICGVRARVELSTGQRR 79
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 39.1 bits (87), Expect = 6e-04
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAE-QNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYS 61
K+Y+G LP + + ++F + ++ + G+AFV++ D A+ A+ L G
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 62 FCGLPLIVEPSVANKK 77
CG+ VE S ++
Sbjct: 64 ICGVRARVELSTGQRR 79
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 39.1 bits (87), Expect = 6e-04
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAE-QNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYS 61
K+Y+G LP + + ++F + ++ + G+AFV++ D A+ A+ L G
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 62 FCGLPLIVEPSVANKK 77
CG+ VE S ++
Sbjct: 64 ICGVRARVELSTGQRR 79
>Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical
protein ZK863.7 protein.
Length = 305
Score = 37.9 bits (84), Expect = 0.001
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYS 61
+KL++GNLP VD ++Q+F + V E + + YAFV ++ D I +L GY+
Sbjct: 3 SKLFVGNLPDNVDSNKLKQVF-QPFCKVTECDIVK-NYAFVHI-EEDDVDPIITRLTGYT 59
Query: 62 FCGLPLIVEPSVAN-KKMVNVPN 83
G + ++ S + + +PN
Sbjct: 60 IDGKVVNIKKSTSKLRPTPGMPN 82
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHG 59
+L++GNLP EV E +++LF+ +AE + G+AF+ ++ A+ A + + G
Sbjct: 117 RLFVGNLPNEVKETELKELFSPHG-DIAECYLSGKGFAFLRLDTRAHAESAKEAIDG 172
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHG 59
+L++GNLP EV E +++LF+ +AE + G+AF+ ++ A+ A + + G
Sbjct: 117 RLFVGNLPNEVKETELKELFSPHG-DIAECYLSGKGFAFLRLDTRAHAESAKEAIDG 172
>U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein.
Length = 305
Score = 37.9 bits (84), Expect = 0.001
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYS 61
+KL++GNLP VD ++Q+F + V E + + YAFV ++ D I +L GY+
Sbjct: 3 SKLFVGNLPDNVDSNKLKQVF-QPFCKVTECDIVK-NYAFVHI-EEDDVDPIITRLTGYT 59
Query: 62 FCGLPLIVEPSVAN-KKMVNVPN 83
G + ++ S + + +PN
Sbjct: 60 IDGKVVNIKKSTSKLRPTPGMPN 82
>Z78536-3|CAB01717.1| 270|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 270
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISV-KRGGYAFVDFPDQSAADRAIDKLHGYSF 62
+Y+GN+ + +A +R LF+ +AE+ + K YAFV + + A +AI +++G
Sbjct: 131 VYVGNISQQTTDADLRDLFSTYG-DIAEVRIFKTQRYAFVRYEKKECATKAIMEMNGKEM 189
Query: 63 CG 64
G
Sbjct: 190 AG 191
Score = 28.7 bits (61), Expect = 0.85
Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 6/62 (9%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE-----QNLTVAEISVKRG-GYAFVDFPDQSAADRAIDKL 57
+++G+L +V ++ F + + + ++ ++ GY FV FP++ A+ AI +
Sbjct: 29 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 88
Query: 58 HG 59
+G
Sbjct: 89 NG 90
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE-----QNLTVAEISVKRG-GYAFVDFPDQSAADRAIDKL 57
+++G+L E+D +R+ F + + + + + +G GY FV +P + A+RAID++
Sbjct: 134 VFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEM 193
Query: 58 HG 59
+G
Sbjct: 194 NG 195
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYSFC 63
+Y+GN+ + E +R+ F + K GYAFV F + +A RAI +++
Sbjct: 258 VYVGNIA-NLGEDEIRRAFDRFGPINEVRTFKIQGYAFVKFETKESAARAIVQMNNADIG 316
Query: 64 G 64
G
Sbjct: 317 G 317
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE-QNLTVAEI-----SVKRGGYAFVDFPDQSAADRAIDKL 57
+++G+L EVD +R+ F +++ A++ + K GY FV +P + A+RAI+++
Sbjct: 24 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 83
Query: 58 HG 59
+G
Sbjct: 84 NG 85
Score = 33.9 bits (74), Expect = 0.023
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISV-KRGGYAFVDFPDQSAADRAIDKLHGYSF 62
+Y+GN+ + E +RQ FA + E+ + K GYAFV F ++ AA +AI +++
Sbjct: 130 VYVGNIA-SLTEDEIRQGFASFG-RITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDV 187
Query: 63 CG 64
G
Sbjct: 188 GG 189
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE-QNLTVAEI-----SVKRGGYAFVDFPDQSAADRAIDKL 57
+++G+L EVD +R+ F +++ A++ + K GY FV +P + A+RAI+++
Sbjct: 34 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 93
Query: 58 HG 59
+G
Sbjct: 94 NG 95
Score = 33.9 bits (74), Expect = 0.023
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISV-KRGGYAFVDFPDQSAADRAIDKLHGYSF 62
+Y+GN+ + E +RQ FA + E+ + K GYAFV F ++ AA +AI +++
Sbjct: 140 VYVGNIA-SLTEDEIRQGFASFG-RITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDV 197
Query: 63 CG 64
G
Sbjct: 198 GG 199
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE-QNLTVAEI-----SVKRGGYAFVDFPDQSAADRAIDKL 57
+++G+L EVD +R+ F +++ A++ + K GY FV +P + A+RAI+++
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 58 HG 59
+G
Sbjct: 197 NG 198
Score = 33.9 bits (74), Expect = 0.023
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISV-KRGGYAFVDFPDQSAADRAIDKLHGYSF 62
+Y+GN+ + E +RQ FA + E+ + K GYAFV F ++ AA +AI +++
Sbjct: 243 VYVGNIA-SLTEDEIRQGFASFG-RITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDV 300
Query: 63 CG 64
G
Sbjct: 301 GG 302
Score = 30.3 bits (65), Expect = 0.28
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGG----YAFVDFPDQSAADRAIDKLH 58
LY+GNL V E + LF Q +V + V G YAFV+F D A +A+ ++
Sbjct: 48 LYVGNLDSTVTEDFIATLF-NQIGSVTKTKVIFDGSNDPYAFVEFSDHGQASQALQTMN 105
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 36.7 bits (81), Expect = 0.003
Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE-QNLTVAEI-----SVKRGGYAFVDFPDQSAADRAIDKL 57
+++G+L EVD +R+ F +++ A++ + K GY FV +P + A+RAI+++
Sbjct: 105 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 164
Query: 58 HG 59
+G
Sbjct: 165 NG 166
Score = 33.9 bits (74), Expect = 0.023
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISV-KRGGYAFVDFPDQSAADRAIDKLHGYSF 62
+Y+GN+ + E +RQ FA + E+ + K GYAFV F ++ AA +AI +++
Sbjct: 211 VYVGNIA-SLTEDEIRQGFASFG-RITEVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDV 268
Query: 63 CG 64
G
Sbjct: 269 GG 270
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 36.3 bits (80), Expect = 0.004
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQ------NLTVAEISVKRGGYAFVDFPDQSAADRAIDKL 57
+Y+G L +V E+ + +L + N+ ++ G+ FV+F + AD AI L
Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74
Query: 58 HGYSFCGLPLIVEPSVANKKMVNV 81
+ G P+ V + A++K ++V
Sbjct: 75 NMIKLYGKPIKVNKASAHEKNMDV 98
Score = 34.7 bits (76), Expect = 0.013
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-------GYAFVDFPDQSAADRAIDK 56
+++GNL EVDE + F+ + + + R G+AF++F A+D A++
Sbjct: 102 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 161
Query: 57 LHGYSFCGLPLIV 69
++G C + V
Sbjct: 162 MNGQFLCNRAITV 174
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 36.3 bits (80), Expect = 0.004
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQ------NLTVAEISVKRGGYAFVDFPDQSAADRAIDKL 57
+Y+G L +V E+ + +L + N+ ++ G+ FV+F + AD AI L
Sbjct: 25 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 84
Query: 58 HGYSFCGLPLIVEPSVANKKMVNV 81
+ G P+ V + A++K ++V
Sbjct: 85 NMIKLYGKPIKVNKASAHEKNMDV 108
Score = 34.7 bits (76), Expect = 0.013
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-------GYAFVDFPDQSAADRAIDK 56
+++GNL EVDE + F+ + + + R G+AF++F A+D A++
Sbjct: 112 IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEA 171
Query: 57 LHGYSFCGLPLIV 69
++G C + V
Sbjct: 172 MNGQFLCNRAITV 184
>U21320-5|AAA62536.2| 332|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 7 protein.
Length = 332
Score = 35.5 bits (78), Expect = 0.007
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE----QNLT-VAEISVKRGGYAFVDFPDQSAADRAIDKLH 58
L++G + YE E+ +R+ F + LT V + + K GYAF+++ D++ A K
Sbjct: 106 LFVGRINYETSESKLRREFEAYGKIKKLTMVHDEAGKPRGYAFIEYSDKAEMHTAYKKAD 165
Query: 59 GYSFCGLPLIVE 70
G G L+V+
Sbjct: 166 GIKVDGKRLVVD 177
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 34.7 bits (76), Expect = 0.013
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYSF 62
++YIG L V E + F + ++ +K G + FV+F D+ A+ A+ L+G
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYG-QIRDVLLKNG-FGFVEFDDKRDAEDAVHDLNGKEL 61
Query: 63 CGLPLIVEPS 72
G +I++ S
Sbjct: 62 GGERVILDYS 71
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 34.7 bits (76), Expect = 0.013
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYSF 62
++YIG L V E + F + ++ +K G + FV+F D+ A+ A+ L+G
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYG-QIRDVLLKNG-FGFVEFDDKRDAEDAVHDLNGKEL 61
Query: 63 CGLPLIVEPS 72
G +I++ S
Sbjct: 62 GGERVILDYS 71
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 34.7 bits (76), Expect = 0.013
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYSF 62
++YIG L V E + F + ++ +K G + FV+F D+ A+ A+ L+G
Sbjct: 4 RIYIGRLTSRVSEKDIEHFFRGYG-QIRDVLLKNG-FGFVEFDDKRDAEDAVHDLNGKEL 61
Query: 63 CGLPLIVEPS 72
G +I++ S
Sbjct: 62 GGERVILDYS 71
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 33.9 bits (74), Expect = 0.023
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Query: 3 KLYIGNLPYEVDEAAVRQLFA-----EQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKL 57
KL+IG L + +E +R++FA E + + K G AFV F ++S A A ++
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEM 202
Query: 58 H---GYSFCGLPLIVEPSVANK-KMVNVPNLERSSAAQLNEGSNGSPSGG 103
H C PL+V+ + K K V ++ S A GSP GG
Sbjct: 203 HHSQTMEGCSAPLVVKFADTQKDKDVKTKSMITGSGA-------GSPKGG 245
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 33.9 bits (74), Expect = 0.023
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Query: 3 KLYIGNLPYEVDEAAVRQLFA-----EQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKL 57
KL+IG L + +E +R++FA E + + K G AFV F ++S A A ++
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEM 202
Query: 58 H---GYSFCGLPLIVEPSVANK-KMVNVPNLERSSAAQLNEGSNGSPSGG 103
H C PL+V+ + K K V ++ S A GSP GG
Sbjct: 203 HHSQTMEGCSAPLVVKFADTQKDKDVKTKSMITGSGA-------GSPKGG 245
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 33.9 bits (74), Expect = 0.023
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFV 42
+L++GNLP EV E +++LF+ +AE + G+AF+
Sbjct: 117 RLFVGNLPNEVKETELKELFSPHG-DIAECYLSGKGFAFL 155
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 33.5 bits (73), Expect = 0.030
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISV----KRG---GYAFVDFPDQSAADRAID 55
+L++ NLPY E ++ LF + V+E+ V K G G+A V+F AA A
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYG-EVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYS 338
Query: 56 KLHGYSFCGLPLIVEP 71
L GY F G + + P
Sbjct: 339 ALDGYVFKGRMMHILP 354
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 33.1 bits (72), Expect = 0.040
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-------GYAFVDFPDQSAADRAI 54
+++GNLP+E+ E A+ F+ Q V + + R G+AFV+F S+ A+
Sbjct: 248 IFVGNLPFEITEDALITFFSAQIGPVEAVRIVRDKDTGKGKGFAFVNFKQDSSVSLAL 305
Score = 25.8 bits (54), Expect = 6.0
Identities = 7/21 (33%), Positives = 18/21 (85%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE 24
+++GN+P ++E +VR++F++
Sbjct: 145 VFVGNMPLTMNEKSVRRIFSD 165
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 33.1 bits (72), Expect = 0.040
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-------GYAFVDFPDQSAADRA 53
M LYIG+L +V EA + + F+ V I V R GYA+V+F + A+RA
Sbjct: 56 MASLYIGDLHPDVSEAMLFEKFSMAG-PVLSIRVCRDNTSRLSLGYAYVNFQQPADAERA 114
Query: 54 IDKLHGYSFCGLPL 67
+D ++ G P+
Sbjct: 115 LDTMNFEVIHGRPM 128
Score = 31.9 bits (69), Expect = 0.091
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE-----QNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLH 58
+++ N +D+ + +F++ + + + K G+ FV F DQ AA +A++KL+
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLN 299
Query: 59 GYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNE 94
G + A KK L+R A E
Sbjct: 300 DSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQE 335
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE-QNLTVAEISV----KRGGYAFVDFPDQSAADRAIDKLH 58
++I NL +D +V F+ N+ +++ GY FV F + +A AI+K++
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 206
Query: 59 G 59
G
Sbjct: 207 G 207
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 33.1 bits (72), Expect = 0.040
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-------GYAFVDFPDQSAADRA 53
M LYIG+L +V EA + + F+ V I V R GYA+V+F + A+RA
Sbjct: 56 MASLYIGDLHPDVSEAMLFEKFSMAG-PVLSIRVCRDNTSRLSLGYAYVNFQQPADAERA 114
Query: 54 IDKLHGYSFCGLPL 67
+D ++ G P+
Sbjct: 115 LDTMNFEVIHGRPM 128
Score = 31.9 bits (69), Expect = 0.091
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE-----QNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLH 58
+++ N +D+ + +F++ + + + K G+ FV F DQ AA +A++KL+
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEKLN 299
Query: 59 GYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNE 94
G + A KK L+R A E
Sbjct: 300 DSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQE 335
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE-QNLTVAEISV----KRGGYAFVDFPDQSAADRAIDKLH 58
++I NL +D +V F+ N+ +++ GY FV F + +A AI+K++
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 206
Query: 59 G 59
G
Sbjct: 207 G 207
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 33.1 bits (72), Expect = 0.040
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-------GYAFVDFPDQSAADRA 53
M LY+G+L +V+E+ + + F+ V I V R GYA+V+F + A+RA
Sbjct: 31 MASLYVGDLHPDVNESILFEKFSAAG-PVLSIRVCRDNATRLSLGYAYVNFQQPADAERA 89
Query: 54 IDKLHGYSFCGLPL 67
+D ++ + G P+
Sbjct: 90 MDTMNFEALHGKPM 103
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 33.1 bits (72), Expect = 0.040
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-------GYAFVDFPDQSAADRA 53
M LY+G+L +V+E+ + + F+ V I V R GYA+V+F + A+RA
Sbjct: 31 MASLYVGDLHPDVNESILFEKFSAAG-PVLSIRVCRDNATRLSLGYAYVNFQQPADAERA 89
Query: 54 IDKLHGYSFCGLPL 67
+D ++ + G P+
Sbjct: 90 MDTMNFEALHGKPM 103
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 33.1 bits (72), Expect = 0.040
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-------GYAFVDFPDQSAADRA 53
M LY+G+L +V+E+ + + F+ V I V R GYA+V+F + A+RA
Sbjct: 31 MASLYVGDLHPDVNESILFEKFSAAG-PVLSIRVCRDNATRLSLGYAYVNFQQPADAERA 89
Query: 54 IDKLHGYSFCGLPL 67
+D ++ + G P+
Sbjct: 90 MDTMNFEALHGKPM 103
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 33.1 bits (72), Expect = 0.040
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 3 KLYIGNLPYEVDEAAVRQLF-----AEQNLTVAEISVKRG-GYAFVDFPDQSAADRA 53
K+++G LPY + + + F E+ + + + + ++ GY FV D+++A+RA
Sbjct: 36 KIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERA 92
>AF040642-5|AAN73870.2| 138|Caenorhabditis elegans Hypothetical
protein C50D2.5 protein.
Length = 138
Score = 32.7 bits (71), Expect = 0.052
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 4 LYIGNLPYEVDEAAVRQLF----AEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHG 59
LYI NLPY++ + ++F A + + V + R G AFV + D A A + L G
Sbjct: 21 LYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETR-GTAFVVYEDIFDAKTACEHLSG 79
Query: 60 YSFCGLPLIV 69
Y+ L+V
Sbjct: 80 YNVSNRYLVV 89
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 32.3 bits (70), Expect = 0.069
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQ------NLTVAEISVKRGGYAFVDFPDQSAADRAIDKL 57
+YIG L Y + E V +F++ NL + + K G+AF+ + DQ + A+D
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGKSKGFAFLCYKDQRSTILAVDNF 99
Query: 58 HGYS 61
+G S
Sbjct: 100 NGIS 103
>AL032626-17|CAA21536.1| 282|Caenorhabditis elegans Hypothetical
protein Y37D8A.21 protein.
Length = 282
Score = 31.9 bits (69), Expect = 0.091
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQ----NLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHG 59
+Y+ N EVDE + +LF + + + ++ +A V+F D+ + AI+ ++G
Sbjct: 15 IYVANFSEEVDEELLEELFIQAGPVVKVILRDVRDSNAKFALVEFEDELSVLFAIELMNG 74
Query: 60 YSFCGLPLIVEP 71
L V+P
Sbjct: 75 VRLFNQELQVKP 86
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 31.5 bits (68), Expect = 0.12
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG------GYAFVDFPDQSAADRAIDK 56
KL+IG L + E VR LFA + E++V RG G AFV + A AI
Sbjct: 125 KLFIGMLSKQQSEDEVRALFATFG-ELDEVTVLRGADGASKGCAFVKYKHGLDAHMAISA 183
Query: 57 LHG 59
LHG
Sbjct: 184 LHG 186
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE-QNLTVAEISVKRGG-----YAFVDFPDQSAADRAIDKL 57
L+I +LP E +A + Q+FA ++ A++ V R + FV + + ++ AI +
Sbjct: 431 LFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAITAM 490
Query: 58 HGY 60
+G+
Sbjct: 491 NGF 493
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 31.5 bits (68), Expect = 0.12
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG------GYAFVDFPDQSAADRAIDK 56
KL+IG L + E VR LFA + E++V RG G AFV + A AI
Sbjct: 125 KLFIGMLSKQQSEDEVRALFATFG-ELDEVTVLRGADGASKGCAFVKYKHGLDAHMAISA 183
Query: 57 LHG 59
LHG
Sbjct: 184 LHG 186
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE-QNLTVAEISVKRGG-----YAFVDFPDQSAADRAIDKL 57
L+I +LP E +A + Q+FA ++ A++ V R + FV + + ++ AI +
Sbjct: 431 LFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAITAM 490
Query: 58 HGY 60
+G+
Sbjct: 491 NGF 493
>AF067616-7|AAM98029.1| 423|Caenorhabditis elegans Hypothetical
protein F29C4.7b protein.
Length = 423
Score = 31.5 bits (68), Expect = 0.12
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKR-----GGYAFVDFPDQSAADRA 53
L++GN+P +V E +R +F E++ V E+ +K YAFV F A +A
Sbjct: 171 LFVGNMPSDVKEREIRHVF-EEHGKVEEVDIKTPINTDAAYAFVMFQTVDQAIQA 224
>AF067616-6|AAC19192.1| 520|Caenorhabditis elegans Hypothetical
protein F29C4.7a protein.
Length = 520
Score = 31.5 bits (68), Expect = 0.12
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKR-----GGYAFVDFPDQSAADRA 53
L++GN+P +V E +R +F E++ V E+ +K YAFV F A +A
Sbjct: 171 LFVGNMPSDVKEREIRHVF-EEHGKVEEVDIKTPINTDAAYAFVMFQTVDQAIQA 224
>AF067616-5|AAU05574.1| 497|Caenorhabditis elegans Hypothetical
protein F29C4.7c protein.
Length = 497
Score = 31.5 bits (68), Expect = 0.12
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 6/55 (10%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKR-----GGYAFVDFPDQSAADRA 53
L++GN+P +V E +R +F E++ V E+ +K YAFV F A +A
Sbjct: 148 LFVGNMPSDVKEREIRHVF-EEHGKVEEVDIKTPINTDAAYAFVMFQTVDQAIQA 201
>Z50044-2|CAA90354.1| 256|Caenorhabditis elegans Hypothetical
protein F22B5.2 protein.
Length = 256
Score = 30.7 bits (66), Expect = 0.21
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-------GYAFVDFPDQSAADRAI 54
N + NLP E++E +R LF + V I + R G+AFV F + A RAI
Sbjct: 176 NTCRVTNLPQEMNEDELRDLFGKIG-RVIRIFIARDKVTGLPKGFAFVTFESRDDAARAI 234
Query: 55 DKLHGYSFCGLPLIVE 70
+L+ + L VE
Sbjct: 235 AELNDIRMYHMVLKVE 250
>Z49910-5|CAA90120.1| 411|Caenorhabditis elegans Hypothetical
protein F44G4.4a protein.
Length = 411
Score = 30.7 bits (66), Expect = 0.21
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG--------GYAFVDFPDQSAADR 52
++++++G L +VDE +R++F ++ + E +V G+AFV AA+R
Sbjct: 258 ISRIFVGRLTDKVDEHQLRKVFGDEAKSYIETAVVTDVFIPKPFRGFAFVTLSSAEAAER 317
Query: 53 AIDK 56
+ K
Sbjct: 318 IVSK 321
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 30.7 bits (66), Expect = 0.21
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQN--LTVAEISVKRG--GYAFVDFPDQSAADRAIDKL 57
N++Y+ N+P+ E + +F L+V ++ RG G+ FV + ++A L
Sbjct: 51 NRIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKARAAL 110
Query: 58 HGYSFCGLPLIVEPSV-ANKKMVNVPNLE 85
H G + V + +K++N P E
Sbjct: 111 HESHVQGRIIEVRRATPTRRKLINNPQNE 139
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 30.7 bits (66), Expect = 0.21
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQN--LTVAEISVKRG--GYAFVDFPDQSAADRAIDKL 57
N++Y+ N+P+ E + +F L+V ++ RG G+ FV + ++A L
Sbjct: 51 NRIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKARAAL 110
Query: 58 HGYSFCGLPLIVEPSV-ANKKMVNVPNLE 85
H G + V + +K++N P E
Sbjct: 111 HESHVQGRIIEVRRATPTRRKLINNPQNE 139
>Z81521-1|CAB04226.1| 319|Caenorhabditis elegans Hypothetical
protein F32A11.1 protein.
Length = 319
Score = 30.3 bits (65), Expect = 0.28
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 12 EVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYSFCGLPLIVEP 71
+ D R F NL + V R GYA V PDQ +++ + YS L++
Sbjct: 164 DADVTVKRTAFGRTNLN---LEVVRRGYARVPAPDQVKHLKSLQTIPAYSRLISRLLMSE 220
Query: 72 SVANKKMVNV 81
VA+++ V V
Sbjct: 221 KVADRRGVGV 230
>Z68213-3|CAA92438.1| 223|Caenorhabditis elegans Hypothetical
protein C01F6.5 protein.
Length = 223
Score = 30.3 bits (65), Expect = 0.28
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISV----KRGGYAFVDFPDQSAADRAIDKLH 58
++ + NL + V +RQLFAE + ++ K G V P + ADR I K
Sbjct: 73 RINLSNLAHTVHSGDLRQLFAEFKIRNVSVNFNEHGKPVGTGDVTLPKRH-ADRLIQKFA 131
Query: 59 GYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGSNGSPS 101
G S G E A N+ N + A SNG P+
Sbjct: 132 GVSLDG----KEIKFAIIDSANIANRVKFPEAPRRAPSNGRPA 170
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 30.3 bits (65), Expect = 0.28
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKR---------GGYAFVDFPDQSAADRAI 54
+Y+GNLP VD V +LF N+ E+ R YA+V+F Q++ A+
Sbjct: 165 VYVGNLPKGVDGNEVLELF---NMYFGEVMYARMASGPDALPCAYAYVEFSQQASVCNAL 221
Query: 55 DKLHGYSFCGLPLIVEPS 72
G+ F PL ++ S
Sbjct: 222 QN-DGFEFKERPLKIQHS 238
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 30.3 bits (65), Expect = 0.28
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKR---------GGYAFVDFPDQSAADRAI 54
+Y+GNLP VD V +LF N+ E+ R YA+V+F Q++ A+
Sbjct: 165 VYVGNLPKGVDGNEVLELF---NMYFGEVMYARMASGPDALPCAYAYVEFSQQASVCNAL 221
Query: 55 DKLHGYSFCGLPLIVEPS 72
G+ F PL ++ S
Sbjct: 222 QN-DGFEFKERPLKIQHS 238
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 29.9 bits (64), Expect = 0.37
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISV---KRG--GYAFVDFPDQSAADRAIDKL 57
+L++ N+P+ + ++ +F E+ V+++ + +RG G+ FV A+RA +L
Sbjct: 154 RLHVSNIPFRFRDPDLKTMF-EKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQEL 212
Query: 58 HGYSFCGLPLIVEPSVA 74
HG G + V + A
Sbjct: 213 HGSMIEGRKIEVNCATA 229
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 29.9 bits (64), Expect = 0.37
Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISV---KRG--GYAFVDFPDQSAADRAIDKL 57
+L++ N+P+ + ++ +F E+ V+++ + +RG G+ FV A+RA +L
Sbjct: 154 RLHVSNIPFRFRDPDLKTMF-EKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERARQEL 212
Query: 58 HGYSFCGLPLIVEPSVA 74
HG G + V + A
Sbjct: 213 HGSMIEGRKIEVNCATA 229
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 29.5 bits (63), Expect = 0.49
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTV-----AEISVKRGGYAFVDFPDQSAADRAIDKLH 58
L++ NL + D+ + QLF++ V +++ + GYAFV + + A A+ L+
Sbjct: 376 LFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAMLSLN 435
Query: 59 GYSFCGLPLIV 69
G + G L V
Sbjct: 436 GTNLAGKTLQV 446
>AC006663-2|AAF39900.2| 603|Caenorhabditis elegans Hypothetical
protein H24K24.4 protein.
Length = 603
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKR-GGYAFVDFPDQSAADRAIDKLHG 59
+++++I N+P + +++ + V V+ YA+V F A +AI+ + G
Sbjct: 26 LDRIHIKNIPTFIGFKQFKKVLEKILGDVKSKKVRHMSDYAYVTFETPEDAQKAINLVDG 85
Query: 60 YSFCGLPLIVEPSVANKKMVNVPNLERSSAAQ 91
Y + L + + K N E + AQ
Sbjct: 86 YDYKKFILSAQLAATEVKSFRPANPENTEPAQ 117
>Z68880-1|CAA93098.1| 652|Caenorhabditis elegans Hypothetical
protein T14G10.1 protein.
Length = 652
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 7 GNLPYEV-DEAAVRQLFAEQNLTVAEI 32
G LP ++ D AVR+LF +LTVAE+
Sbjct: 228 GLLPEQIPDVPAVRELFVSDDLTVAEL 254
>AL132877-16|CAC70111.1| 628|Caenorhabditis elegans Hypothetical
protein Y105E8B.9 protein.
Length = 628
Score = 27.9 bits (59), Expect = 1.5
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 7 GNLPYEVDEAAVRQLFAEQNLTVA-EISVKRGGYAFVDFPDQSAADRAIDKLHGYSFCGL 65
G+LP+EVD +A + AE TVA ++ DF QS A R I G L
Sbjct: 137 GHLPFEVDISAQIKFGAENKFTVAVNNTLSWSTIPQGDFNYQSVAPRNIS---GRILSRL 193
Query: 66 PLIVEPSVANKKMVNVPNLERS 87
P +V N N + RS
Sbjct: 194 PAGAVKNVGNFDFFNYAGILRS 215
>AC025726-27|AAK73932.2| 383|Caenorhabditis elegans Hypothetical
protein Y71G12B.6 protein.
Length = 383
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 67 LIVEPSVANKKMVNVPNLERSSAAQLNEGSNGSPSG 102
L +E ++K V N+ SSA ++ + +N SPSG
Sbjct: 180 LAIEKLAQSQKPAEVYNISASSAEKIQKETNWSPSG 215
>U55857-6|AAA98032.2| 206|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 2 protein.
Length = 206
Score = 27.5 bits (58), Expect = 2.0
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 4 LYIGNL--PYEVDE-----AAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDK 56
LYI NL ++DE AV + F E + ++K G A V F + AA A +
Sbjct: 10 LYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTLKMRGQAHVIFKELPAASAAREA 69
Query: 57 LHGYSFCGLPLIVE 70
L+G+ F P+ ++
Sbjct: 70 LNGFPFYEKPMRIQ 83
>AF003145-3|AAB57717.1| 751|Caenorhabditis elegans Cpeb polya
binding family protein 3 protein.
Length = 751
Score = 27.5 bits (58), Expect = 2.0
Identities = 8/22 (36%), Positives = 17/22 (77%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAE 24
K+++G +P+++ EAA++ F E
Sbjct: 296 KIFVGGVPWDITEAALKDSFGE 317
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/58 (24%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNL--TVAEISVKRG---GYAFVDFPDQSAADRAI 54
+K+++ N+ ++ + ++ LF++ +V ++ K G G AFVDF +++A + +
Sbjct: 683 SKVFVRNVHFQATDDELKALFSKFGTVTSVRRVTHKDGKPKGIAFVDFDTEASAQKCV 740
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 3 KLYIGNLPYEV-DEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYS 61
+++IGN+ + + +LF +A + G+ FV F + +AD + L+G S
Sbjct: 84 RVFIGNIARAIITRDDIIELFRPFGKIIAVNYFAQQGFGFVQFNEAGSADESCRSLNGMS 143
Query: 62 F 62
+
Sbjct: 144 W 144
>AC024793-5|AAF60689.1| 79|Caenorhabditis elegans Hypothetical
protein Y48G1BL.4 protein.
Length = 79
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/54 (29%), Positives = 20/54 (37%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAI 54
M ++YIG P + F + I G DF DQS AD I
Sbjct: 1 MVRVYIGRFPNRASDRDAEHFFCDYGKLPDAIMKNVFGVGCKDFQDQSDADDII 54
>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts
homolog) family protein 6 protein.
Length = 1186
Score = 26.6 bits (56), Expect = 3.4
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 32 ISVKRGGYAFVDFPDQSAADRAIDKL--HGYSFCGLPLIVEPSVANKKMVNVPNLERSSA 89
I+ RG YA FP+ AA + D+L HGY + P + ++ E+
Sbjct: 293 IAFMRGSYAHAGFPEH-AASKFADQLMNHGYKVARIEQTETPQMLEERNQKTKTKEKVVR 351
Query: 90 AQL-NEGSNGSPSGG 103
++ SNG+ + G
Sbjct: 352 REVCRVTSNGTRTYG 366
>Z99279-4|CAB16494.1| 121|Caenorhabditis elegans Hypothetical
protein Y57G11A.5 protein.
Length = 121
Score = 26.2 bits (55), Expect = 4.5
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 3 KLYIGNLPYEVDEA-----------AVRQLFAEQNLTVAEISVKRG-GYAFVDFPDQSAA 50
++Y+GN+P++ E A+ +F+ + KR G+AFV F A
Sbjct: 18 QVYVGNMPFDATEKELNNDALTIYDAIEAVFSVMGPIKSIWMAKRPPGFAFVTFKRTVHA 77
Query: 51 DRAIDKLHGYSFCGLPLIVE 70
A+ L+G C L VE
Sbjct: 78 FDAVKYLNGKKICDLEAKVE 97
>Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical
protein T11G6.8 protein.
Length = 408
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 4 LYIGNL----PYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHG 59
LYIGNL +V E + F + + G AF++F + AA+RA ++
Sbjct: 237 LYIGNLGPSGAQQVTEKDLNDFFYQYGDIRCLRVLTEKGCAFIEFTTREAAERAAERSFN 296
Query: 60 YSF 62
+F
Sbjct: 297 KTF 299
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEI-------SVKRGGYAFVDFPDQSAADRA 53
K+++G LP + E +R F EQ V +I + R +AF+ F ++ +AD+A
Sbjct: 111 KVFVGGLPSDYSEQDLRSHF-EQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKA 167
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 26.2 bits (55), Expect = 4.5
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEI-------SVKRGGYAFVDFPDQSAADRA 53
K+++G LP + E +R F EQ V +I + R +AF+ F ++ +AD+A
Sbjct: 111 KVFVGGLPSDYSEQDLRSHF-EQFGKVDDIEWPFDKQTKARRNFAFIVFEEEESADKA 167
>Z80216-9|CAH10778.1| 403|Caenorhabditis elegans Hypothetical
protein F10G8.9b protein.
Length = 403
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 13 VDEAAVRQLFAEQNLTVAEI 32
V+ AVRQ+F EQN+ V+ +
Sbjct: 302 VEAEAVRQVFPEQNIAVSSV 321
>Z80216-8|CAB02284.2| 261|Caenorhabditis elegans Hypothetical
protein F10G8.9a protein.
Length = 261
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 13 VDEAAVRQLFAEQNLTVAEI 32
V+ AVRQ+F EQN+ V+ +
Sbjct: 160 VEAEAVRQVFPEQNIAVSSV 179
>Z50874-3|CAA90773.1| 409|Caenorhabditis elegans Hypothetical
protein R10E4.2b protein.
Length = 409
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 38 GYAFVDFPDQSAADRAIDKLH 58
GY FVDF AA A+D L+
Sbjct: 149 GYGFVDFESPQAAAAAVDGLN 169
>Z50874-2|CAA90772.1| 357|Caenorhabditis elegans Hypothetical
protein R10E4.2a protein.
Length = 357
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 38 GYAFVDFPDQSAADRAIDKLH 58
GY FVDF AA A+D L+
Sbjct: 123 GYGFVDFESPQAAAAAVDGLN 143
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 25.8 bits (54), Expect = 6.0
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLF------AEQNLTVAEISVKRGGYAFVDFPDQSAADRAI 54
M+++Y+G++ +E+ E +R+ F N++ + +AFV++ AA A
Sbjct: 101 MSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQ 160
Query: 55 DKLHGYSFCGLPLIV 69
+ ++G G L V
Sbjct: 161 ESMNGQMLGGRNLKV 175
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 25.8 bits (54), Expect = 6.0
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLF------AEQNLTVAEISVKRGGYAFVDFPDQSAADRAI 54
M+++Y+G++ +E+ E +R+ F N++ + +AFV++ AA A
Sbjct: 101 MSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQ 160
Query: 55 DKLHGYSFCGLPLIV 69
+ ++G G L V
Sbjct: 161 ESMNGQMLGGRNLKV 175
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 25.8 bits (54), Expect = 6.0
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLF------AEQNLTVAEISVKRGGYAFVDFPDQSAADRAI 54
M+++Y+G++ +E+ E +R+ F N++ + +AFV++ AA A
Sbjct: 101 MSRIYVGSISFEIREDMLRRAFDPFGPIKSINMSWDPATGHHKTFAFVEYEVPEAALLAQ 160
Query: 55 DKLHGYSFCGLPLIV 69
+ ++G G L V
Sbjct: 161 ESMNGQMLGGRNLKV 175
>Z36948-5|CAD30435.1| 453|Caenorhabditis elegans Hypothetical
protein D2089.4b protein.
Length = 453
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTV 29
L++ N+P V E ++++FAE V
Sbjct: 378 LHLSNIPTSVSEEKLKEMFAEAGFAV 403
>Z36948-4|CAA85411.3| 615|Caenorhabditis elegans Hypothetical
protein D2089.4a protein.
Length = 615
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTV 29
L++ N+P V E ++++FAE V
Sbjct: 540 LHLSNIPTSVSEEKLKEMFAEAGFAV 565
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.315 0.133 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,617
Number of Sequences: 27539
Number of extensions: 91836
Number of successful extensions: 253
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 150
Number of HSP's gapped (non-prelim): 111
length of query: 105
length of database: 12,573,161
effective HSP length: 71
effective length of query: 34
effective length of database: 10,617,892
effective search space: 361008328
effective search space used: 361008328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 53 (25.4 bits)
- SilkBase 1999-2023 -