Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000515-TA|BGIBMGA000515-PA|IPR000504|RNA-binding region
RNP-1 (RNA recognition motif)
(105 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 51 2e-07
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 51 2e-07
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 48 2e-06
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 47 3e-06
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 46 4e-06
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 46 4e-06
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 46 4e-06
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 46 7e-06
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 43 3e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 43 3e-05
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 43 3e-05
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 42 6e-05
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 42 8e-05
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 41 1e-04
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 41 2e-04
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 41 2e-04
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 41 2e-04
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 40 4e-04
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 39 6e-04
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 38 0.001
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 38 0.001
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 38 0.001
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 38 0.002
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 38 0.002
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 37 0.002
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 37 0.002
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 37 0.002
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 37 0.003
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 37 0.003
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 37 0.003
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 36 0.004
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 36 0.005
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 36 0.005
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 36 0.005
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 36 0.005
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 36 0.007
At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / s... 36 0.007
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 36 0.007
At5g51300.2 68418.m06360 splicing factor-related contains simila... 35 0.009
At5g51300.1 68418.m06359 splicing factor-related contains simila... 35 0.009
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 35 0.009
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 35 0.009
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 35 0.012
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 35 0.012
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 35 0.012
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 35 0.012
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 35 0.012
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 35 0.012
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 35 0.012
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 34 0.016
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 34 0.016
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 34 0.016
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 34 0.016
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 34 0.021
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 34 0.021
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 34 0.021
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 34 0.021
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 34 0.021
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 34 0.021
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 34 0.021
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 33 0.028
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 33 0.028
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 33 0.028
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 33 0.028
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 33 0.028
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 33 0.037
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 33 0.037
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 33 0.037
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 33 0.049
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 33 0.049
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 33 0.049
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 33 0.049
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 33 0.049
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 33 0.049
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 32 0.065
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 32 0.065
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 32 0.065
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 32 0.065
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 32 0.065
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 32 0.065
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 32 0.065
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 32 0.065
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 32 0.086
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 32 0.086
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 32 0.086
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 31 0.11
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 31 0.11
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 31 0.11
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 31 0.15
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 31 0.15
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 31 0.15
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 31 0.15
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 31 0.20
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 31 0.20
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 0.20
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 31 0.20
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 30 0.26
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 30 0.26
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 30 0.26
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 30 0.26
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 30 0.26
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 29 0.46
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 29 0.46
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 29 0.46
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 29 0.61
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 29 0.61
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 29 0.61
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 29 0.80
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 29 0.80
At5g52545.1 68418.m06521 expressed protein 28 1.1
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 28 1.1
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 28 1.1
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 28 1.1
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 28 1.1
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 28 1.4
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 28 1.4
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 28 1.4
At1g73700.1 68414.m08534 MATE efflux family protein similar to r... 28 1.4
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 27 1.9
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 27 1.9
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 27 1.9
At5g12080.2 68418.m01415 mechanosensitive ion channel domain-con... 27 2.4
At5g12080.1 68418.m01414 mechanosensitive ion channel domain-con... 27 2.4
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 27 2.4
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 27 2.4
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 27 2.4
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 27 2.4
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 27 3.2
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 27 3.2
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 27 3.2
At5g25780.1 68418.m03060 eukaryotic translation initiation facto... 27 3.2
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 27 3.2
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 27 3.2
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 27 3.2
At5g03190.1 68418.m00267 expressed protein 26 4.3
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 26 4.3
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 26 4.3
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 26 4.3
At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing ... 26 5.7
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 26 5.7
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 26 5.7
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 26 5.7
At1g10150.1 68414.m01144 expressed protein similar to ESTs gb|T2... 26 5.7
At5g16920.1 68418.m01983 expressed protein 25 7.5
At3g59020.1 68416.m06578 importin beta-2 subunit family protein ... 25 7.5
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 25 7.5
At5g56960.1 68418.m07110 basic helix-loop-helix (bHLH) family pr... 25 9.9
At5g19730.1 68418.m02346 pectinesterase family protein contains ... 25 9.9
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 25 9.9
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 25 9.9
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 25 9.9
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 50.8 bits (116), Expect = 2e-07
Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVA---EISVKRGGYAFVDFPDQSAADRAIDKLHGY 60
+Y+GNLP ++ E V LF++ V +I + GYAFV+F D AD AI GY
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 61 SFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGSNGSPSGGWR 105
F G L VE + ++ + R S + G G GG R
Sbjct: 69 DFDGHHLRVELAHGGRRS---SHDARGSYSGRGRGGRGGGDGGGR 110
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 50.8 bits (116), Expect = 2e-07
Identities = 36/105 (34%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVA---EISVKRGGYAFVDFPDQSAADRAIDKLHGY 60
+Y+GNLP ++ E V LF++ V +I + GYAFV+F D AD AI GY
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 61 SFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGSNGSPSGGWR 105
F G L VE + ++ + R S + G G GG R
Sbjct: 69 DFDGHHLRVELAHGGRRS---SHDARGSYSGRGRGGRGGGDGGGR 110
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 47.6 bits (108), Expect = 2e-06
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTV---AEISVKRGGYAFVDFPDQSAADRAIDKLHGY 60
+Y+GNLP ++ + V LF + V +I + GYAFV+F D AD AI GY
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68
Query: 61 SFCGLPLIVEPSVANKKMVNVPNLERSSAA 90
F G L VE + ++ P+++R S++
Sbjct: 69 DFDGCRLRVEIAHGGRRF--SPSVDRYSSS 96
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 46.8 bits (106), Expect = 3e-06
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQN--LTVAEI---SVKRGGYAFVDFPDQSAADRAIDK 56
N +Y+G LPY++ E AVR++F+ LTV + SV+ Y FV F ++ +AD AI+
Sbjct: 7 NSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIED 66
Query: 57 LHGYSFCG 64
+ G S G
Sbjct: 67 MDGKSIGG 74
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 46.4 bits (105), Expect = 4e-06
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVA---EISVKRGGYAFVDFPDQSAADRAIDKLHGY 60
+Y+GNLP ++ E V LF++ V ++ + GYAFV+F D A+ AI GY
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 61 SFCGLPLIVE 70
F G L VE
Sbjct: 69 DFDGHRLRVE 78
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 46.4 bits (105), Expect = 4e-06
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVA---EISVKRGGYAFVDFPDQSAADRAIDKLHGY 60
+Y+GNLP ++ E V LF++ V ++ + GYAFV+F D A+ AI GY
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 61 SFCGLPLIVE 70
F G L VE
Sbjct: 69 DFDGHRLRVE 78
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 46.4 bits (105), Expect = 4e-06
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVA---EISVKRGGYAFVDFPDQSAADRAIDKLHGY 60
+Y+GNLP ++ E V LF++ V ++ + GYAFV+F D A+ AI GY
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 61 SFCGLPLIVE 70
F G L VE
Sbjct: 69 DFDGHRLRVE 78
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 45.6 bits (103), Expect = 7e-06
Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Query: 3 KLYIGNLPYEVDEAAVRQLF-AEQNLTVAE-----ISVKRGGYAFVDFPDQSAADRAIDK 56
KL++GNLP+ VD A + QLF + N+ + E I+ + G+ FV S + A +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 57 LHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGSNGSPSGG 103
+GY G PL V K + R + GS+GS GG
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKRED--GFSRGPRSSF--GSSGSGYGG 194
Score = 39.5 bits (88), Expect = 4e-04
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTV-AEI-----SVKRGGYAFVDFPDQSAADRAID 55
N++Y+GNL + VD+ A+ LF+EQ V A + S + G+ FV + AI
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263
Query: 56 KLHGYSFCGLPLIVEPSVA 74
L G G + V + A
Sbjct: 264 SLDGADLDGRQIRVSEAEA 282
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 43.2 bits (97), Expect = 3e-05
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQ-NLTVAEISVKRG-----GYAFVDFPDQSAADRAIDK 56
KL++GNLPY+VD A+ LF + + ++E+ R G+ FV A++A++K
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 57 LHGYSFCGLPLIV 69
+ + G L V
Sbjct: 174 FNSFEVNGRRLTV 186
Score = 36.3 bits (80), Expect = 0.004
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTV-AEISVKR-----GGYAFVDFPDQSAADRAIDK 56
++Y+GNLP++VD + +LF+E V A + R G+ FV +++ + AI
Sbjct: 208 RIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAA 267
Query: 57 LHGYSFCG 64
L G + G
Sbjct: 268 LDGQNLEG 275
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 43.2 bits (97), Expect = 3e-05
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Query: 3 KLYIGNLPYEVDEAAVRQLF-AEQNLTVAE-----ISVKRGGYAFVDFPDQSAADRAIDK 56
KL++GNL + VD A + QLF + N+ + E ++ + G+ FV + + A +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 57 LHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGSNGSPSGG 103
+GY F G PL V P E S + G GS GG
Sbjct: 160 FNGYEFEGRPLRVNAGPP------PPKREESFSRGPRSGGYGSERGG 200
Score = 40.7 bits (91), Expect = 2e-04
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTV-AEI-----SVKRGGYAFVDFPDQSAADRAID 55
N+LY+GNL + VD+ A+ LF EQ V A + S + G+ FV +AI+
Sbjct: 249 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 308
Query: 56 KLHGYSFCGLPLIVEPSVA 74
L+G G + V + A
Sbjct: 309 SLNGADLDGRQIRVSEAEA 327
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 43.2 bits (97), Expect = 3e-05
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Query: 3 KLYIGNLPYEVDEAAVRQLF-AEQNLTVAE-----ISVKRGGYAFVDFPDQSAADRAIDK 56
KL++GNL + VD A + QLF + N+ + E ++ + G+ FV + + A +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 57 LHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGSNGSPSGG 103
+GY F G PL V P E S + G GS GG
Sbjct: 160 FNGYEFEGRPLRVNAGPP------PPKREESFSRGPRSGGYGSERGG 200
Score = 40.7 bits (91), Expect = 2e-04
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTV-AEI-----SVKRGGYAFVDFPDQSAADRAID 55
N+LY+GNL + VD+ A+ LF EQ V A + S + G+ FV +AI+
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 56 KLHGYSFCGLPLIVEPSVA 74
L+G G + V + A
Sbjct: 317 SLNGADLDGRQIRVSEAEA 335
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 42.3 bits (95), Expect = 6e-05
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTV-AEISVKRG-----GYAFVDFPDQSAADRAIDK 56
KL+IG L + D+A++R FA V A++ V R G+ FV+F D+ AA AI +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 57 LHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGSNGSPSGG 103
+ G G + V P AN + + P G G GG
Sbjct: 96 MDGKELNGRHIRVNP--ANDR-PSAPRAYGGGGGYSYGGGGGGYGGG 139
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 41.9 bits (94), Expect = 8e-05
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTV-AEISVKRG-----GYAFVDFPDQSAADRAIDK 56
KL+IG L + D+A++R FA V A++ V R G+ FV+F D+ AA AI +
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 57 LHGYSFCGLPLIVEPS 72
+ G G + V P+
Sbjct: 96 MDGKELNGRHIRVNPA 111
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 41.1 bits (92), Expect = 1e-04
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 2 NKLYIGNLPYEVDEAAVRQLF--AEQN-----LTVAEISVKRGGYAFVDFPDQSAADRAI 54
+KLY+ NL ++ +R+LF A+ N + A+ + GY FV F + A+ AI
Sbjct: 194 HKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAI 253
Query: 55 DKLHGYSFCGLPLIVEPSV 73
KL+G G P+ ++ S+
Sbjct: 254 TKLNGKEIMGRPITLKFSL 272
Score = 31.1 bits (67), Expect = 0.15
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISV------KRGGYAFVDFPDQSAADRAIDK 56
KL++ NLP+ + + +LF + TV + + K G+AFV A AIDK
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCG-TVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDK 154
Query: 57 LHGYSFCG 64
+ G
Sbjct: 155 FDTFQVSG 162
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor
RSP31 (RSP31) identical to SP|P92964
Arginine/serine-rich splicing factor RSP31 {Arabidopsis
thaliana}
Length = 264
Score = 40.7 bits (91), Expect = 2e-04
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGY 60
M +++GN YE ++ + +LF + V + +K GYAFV F D+ A+ AI KL +
Sbjct: 1 MRPVFVGNFEYETRQSDLERLFDKYG-RVDRVDMK-SGYAFVYFEDERDAEDAIRKLDNF 58
Query: 61 SF 62
F
Sbjct: 59 PF 60
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 40.7 bits (91), Expect = 2e-04
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Query: 2 NKLYIGNLPYEVDEAAVRQLF------AEQNLTVAEISVKRGGYAFVDFPDQSAADRAID 55
+KL+IG L + VDE +++ F AE + + S + G+ FVDF ++ A A D
Sbjct: 41 SKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKD 100
Query: 56 KLHGYSFCGLPLIVEPSVANKK--MVNVPNLERS 87
+ G G PL + ++ + V VP L +S
Sbjct: 101 AMDGKGLLGRPLRISFALERVRGGPVVVPRLGKS 134
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 40.7 bits (91), Expect = 2e-04
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAE-QNLTVAEISVKRG-----GYAFVDFPDQSAADRAIDK 56
KLY GNLPY VD A + Q+ + N + E+ R G+AFV + + ID
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDN 145
Query: 57 LHGYSFCGLPLIV 69
L G + G L V
Sbjct: 146 LDGTEYLGRALKV 158
Score = 29.5 bits (63), Expect = 0.46
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG------GYAFVDFPDQSAADRAID 55
+KL++GNL + V ++ F E V V G GY FV + ++ + A++
Sbjct: 177 HKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALE 236
Query: 56 KLHGYSFCGLPLIVEPSVANK 76
L G+ G + V + K
Sbjct: 237 SLDGFELEGRAIRVNLAQGKK 257
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 39.5 bits (88), Expect = 4e-04
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKR-----GGYAFVDFPDQSAADRAIDK 56
N++YIGNL ++ E +R+LF++ + + + GYA VDF D + A+ K
Sbjct: 262 NRVYIGNLAWDTTERDIRKLFSDCVINSVRLGKNKETGEFKGYAHVDFKDSVSVAIAL-K 320
Query: 57 LHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLN 93
L CG P+ + ++ ++ + E ++A N
Sbjct: 321 LDQQVICGRPVKICCALKDRPATDHTPGETNNAGSYN 357
Score = 32.7 bits (71), Expect = 0.049
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKR------GGYAFVDFPDQSAADRAI 54
NKLY+G +PY+ E +R F + + R G AF+ F + A RA+
Sbjct: 161 NKLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRAL 219
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 39.1 bits (87), Expect = 6e-04
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTV-AEISVKR-----GGYAFVDFPDQSAADRAIDK 56
++Y+GNLP++VD + QLF+E V A + R G+ FV D + AI
Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISA 304
Query: 57 LHGYSFCG 64
L G + G
Sbjct: 305 LDGQNLEG 312
Score = 38.7 bits (86), Expect = 8e-04
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQ-NLTVAEISVKR-----GGYAFVDFPDQSAADRAIDK 56
KL++GNL Y+V+ A+ LF + + +AE+ R G+ FV A+ A++K
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 57 LHGYSFCGLPLIV 69
+ Y G L V
Sbjct: 211 FNRYDLNGRLLTV 223
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 38.3 bits (85), Expect = 0.001
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-GYAFVDFPDQSAADRAIDKLHGYSF 62
L++GNLP+ + E + F + ++ + G YAFV+F A AI+ L G+
Sbjct: 25 LWVGNLPHGILERELADRFLRFG-ELESLAFQPGRSYAFVNFNHDEDAFAAIESLQGFPL 83
Query: 63 CGLPLIVEPSVANK 76
G PL +E + A K
Sbjct: 84 SGNPLRIEFAKAEK 97
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 37.9 bits (84), Expect = 0.001
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 11/110 (10%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG------GYAFVDFPDQSAADRAID 55
+KL++G LP V EA V+ LF++ T+ ++ + RG G AF+ + + A A++
Sbjct: 106 HKLFVGMLPKNVSEAEVQSLFSKYG-TIKDLQILRGAQQTSKGCAFLKYETKEQAVSAME 164
Query: 56 KLHG-YSFCG--LPLIVE-PSVANKKMVNVPNLERSSAAQLNEGSNGSPS 101
++G + G +PL+V+ ++ +S A+L G +PS
Sbjct: 165 SINGKHKMEGSTVPLVVKWADTERERHTRRLQKAQSHIARLGNGDPTNPS 214
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 37.9 bits (84), Expect = 0.001
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 11/110 (10%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG------GYAFVDFPDQSAADRAID 55
+KL++G LP V EA V+ LF++ T+ ++ + RG G AF+ + + A A++
Sbjct: 106 HKLFVGMLPKNVSEAEVQSLFSKYG-TIKDLQILRGAQQTSKGCAFLKYETKEQAVSAME 164
Query: 56 KLHG-YSFCG--LPLIVE-PSVANKKMVNVPNLERSSAAQLNEGSNGSPS 101
++G + G +PL+V+ ++ +S A+L G +PS
Sbjct: 165 SINGKHKMEGSTVPLVVKWADTERERHTRRLQKAQSHIARLGNGDPTNPS 214
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 37.5 bits (83), Expect = 0.002
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 33 SVKRGGYAFVDFPDQSAADRAIDKLHGYSFCGLPLIVE-PSVANKKMVNVPNLERSSAAQ 91
S K GY V+F D AA D L+GY F G P +VE S + K + + R+ AQ
Sbjct: 271 SGKSKGYCQVEFYDPVAASACKDALNGYPFNGRPCVVEYASPYSVKRMGEAQVNRTQQAQ 330
Query: 92 --LNEGSNGSPS 101
+ + G P+
Sbjct: 331 SVIAQAKRGGPA 342
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 37.5 bits (83), Expect = 0.002
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYSF 62
+LY+G L + +LF+ V ++ +KR YAFV+F D AD A L G F
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYG-RVRDVDMKRD-YAFVEFSDPRDADDARYYLDGRDF 69
Query: 63 CGLPLIVEPS 72
G + VE S
Sbjct: 70 DGSRITVEAS 79
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 37.1 bits (82), Expect = 0.002
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-------GYAFVDFPDQSAADRAI 54
++++IG LP +V E +R L E+ + E+ + + GYAFV F + A +AI
Sbjct: 116 SEVFIGGLPRDVGEEDLRDL-CEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI 174
Query: 55 DKLHGYSFCG 64
++LH F G
Sbjct: 175 EELHSKEFKG 184
Score = 25.8 bits (54), Expect = 5.7
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAEI--------SVKRGGYAFVDFPDQSAADRA 53
N+L+IGN+P E R++ + V I + + G+AFV + + + AD +
Sbjct: 196 NRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGFAFVLYYNNACADYS 255
Query: 54 IDKLHGYSF 62
K+ +F
Sbjct: 256 RQKMIDSNF 264
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 37.1 bits (82), Expect = 0.002
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-------GYAFVDFPDQSAADRAID 55
KL I NLP++ + ++ +F+ V ++ + + G+AFV F + A AI
Sbjct: 332 KLIIRNLPFQAKPSDIKVVFSAVGF-VWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIK 390
Query: 56 KLHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGSNG 98
K +G+ F P+ V+ +V + +SA EGS+G
Sbjct: 391 KFNGHMFGKRPIAVDWAVPKNIYNGAADATTASADGDKEGSDG 433
Score = 30.3 bits (65), Expect = 0.26
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
Query: 6 IGNLPYEVDEAAVRQLFAEQN------LTVAEISVKRGGYAFVDFPDQSAADRAIDKLHG 59
+ LPY + A + + F+E L + S + G+AFV F Q +RAI+ +G
Sbjct: 24 VSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFALQEDVNRAIELKNG 83
Query: 60 YSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGSNG 98
+ G + V+ A++ + + + + + S G
Sbjct: 84 STVGGRRITVK-QAAHRPSLQERRTKAAEGISVPDNSQG 121
Score = 28.3 bits (60), Expect = 1.1
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 4 LYIGNLPYEVDEAAVRQLFA------EQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKL 57
L+I NLP++V + V+Q F +L + +++ + G AFV F A+ AI
Sbjct: 563 LFIRNLPFDVTKEEVKQRFTVFGEVESLSLVLHKVTKRPEGTAFVKFKTADASVAAISAA 622
Query: 58 HGYSFCGLPL 67
S G+ L
Sbjct: 623 DTASGVGVLL 632
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 37.1 bits (82), Expect = 0.002
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-----GYAFVDFPDQSAADRAIDKLH 58
+Y+ NL + + + ++F E +T + + ++ G G+ FV+F + A RA+D L+
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 59 GYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGSNGS 99
G +F V A KK L++ L E ++ S
Sbjct: 286 GKTFDDKEWFV--GKAQKKSERETELKQKFEQSLKEAADKS 324
Score = 32.7 bits (71), Expect = 0.049
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQN-LTVAEISV----KRGGYAFVDFPDQSAADRAID 55
+ ++I NL +D A+ + F+ + +++V + GY FV + AA AID
Sbjct: 132 VGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAID 191
Query: 56 KLHGYSFCGLPLIVEPSV 73
KL+G + V P V
Sbjct: 192 KLNGMLLNDKQVYVGPFV 209
Score = 28.7 bits (61), Expect = 0.80
Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVA-----EISVKRG-GYAFVDFPDQSAADRAIDKL 57
LY+G+L V ++ + + F + V+ +++ +R GY +V++ A RA+++L
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 58 HGYSFCGLPLIVEPSVANKKM 78
+ + G + V SV + +
Sbjct: 107 NFMALNGRAIRVMYSVRDPSL 127
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 36.7 bits (81), Expect = 0.003
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 17/109 (15%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTV-AEISVKR-----GGYAFVDFPDQSAADRAID 55
+KL+IG + Y +DE ++R+ F + V + + R G+ FV F AA AI
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 56 KLHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGSNGSPSGGW 104
L G G +V+ + AN +R+S G G GG+
Sbjct: 100 ALDGRDLHG--RVVKVNYAN---------DRTSGGGFGGGGYGGGGGGY 137
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGY 60
M +Y+GN Y+ + + +LF++ V + +K GYAFV F D+ A+ AI +
Sbjct: 1 MRHVYVGNFDYDTRHSDLERLFSKFG-RVKRVDMK-SGYAFVYFEDERDAEDAIRRTDNT 58
Query: 61 SF 62
+F
Sbjct: 59 TF 60
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain), PF00098: Zinc knuckle
Length = 290
Score = 36.7 bits (81), Expect = 0.003
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYSF 62
+LY+G L + +LF+ V ++ +KR YAFV+F D AD A L G F
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYG-RVRDVDMKRD-YAFVEFGDPRDADDARHYLDGRDF 69
Query: 63 CGLPLIVE 70
G + VE
Sbjct: 70 DGSRITVE 77
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 36.3 bits (80), Expect = 0.004
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQN-LTVAEISVKR-----GGYAFVDFPDQSAADRAIDK 56
KLYIG L DE +++ F+ N +T A + + GY FV+F + +A+ AI
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 57 LHGYSFCGLPLIV 69
++G G + V
Sbjct: 92 MNGQELNGFNISV 104
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 35.9 bits (79), Expect = 0.005
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQ------NLTVAEISVKRGGYAFVDFPDQSAADRAIDKL 57
+Y+G +P+++ E + +F++ NL + + K G+AF+ + DQ + A+D L
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 58 HGYSFCGLPLIVEPSVANKK 77
+G G + V+ A KK
Sbjct: 98 NGALVLGRTIKVDHCGAYKK 117
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 35.9 bits (79), Expect = 0.005
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 2 NKLYIGNLPYEVDEAAVRQLF----AEQNLTVAEISVKRG---GYAFVDFPDQSAADRAI 54
N + + NL + E + +LF A + VA I K G G+ FV+F + A RAI
Sbjct: 213 NSVRVTNLSEDTREPDLMELFHPFGAVTRVYVA-IDQKTGVSRGFGFVNFVSREDAQRAI 271
Query: 55 DKLHGYSFCGLPLIVE 70
+KL+GY + L L VE
Sbjct: 272 NKLNGYGYDNLILRVE 287
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 35.9 bits (79), Expect = 0.005
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG------GYAFVDFPDQSAADRAID 55
+KL++G LP V E V+ LF+E T+ ++ + RG G F+ + + A A++
Sbjct: 109 HKLFVGMLPKNVSETEVQSLFSEYG-TIKDLQILRGSLQTSKGCLFLKYESKEQAVAAME 167
Query: 56 KLHGYSF---CGLPLIVE 70
L+G +PLIV+
Sbjct: 168 ALNGRHIMEGANVPLIVK 185
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 35.9 bits (79), Expect = 0.005
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG------GYAFVDFPDQSAADRAID 55
+KL++G LP V E V+ LF+E T+ ++ + RG G F+ + + A A++
Sbjct: 100 HKLFVGMLPKNVSETEVQSLFSEYG-TIKDLQILRGSLQTSKGCLFLKYESKEQAVAAME 158
Query: 56 KLHGYSF---CGLPLIVE 70
L+G +PLIV+
Sbjct: 159 ALNGRHIMEGANVPLIVK 176
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative
strong similarity to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 35.5 bits (78), Expect = 0.007
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTV-AEISV--KRGGYAFVDFPDQSAADRAIDKLHGY 60
+Y+GNLP ++ E + +F + V E+ V + Y FV+F A+ AI GY
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68
Query: 61 SFCGLPLIVE 70
+ G L VE
Sbjct: 69 NLDGCRLRVE 78
>At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A /
spliceosomal protein U1A / U1snRNP-specific protein
identical to GB:Z49991 U1snRNP-specific protein
[Arabidopsis thaliana]
Length = 250
Score = 35.5 bits (78), Expect = 0.007
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAE-QNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGY 60
N L++ NLP+E ++ LF + Q + + G AFV+F D+ + A+ L G+
Sbjct: 177 NILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGF 236
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 35.5 bits (78), Expect = 0.007
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAE------QNLTVAEISVKRGGYAFVDFPDQSAADRAIDK 56
KLY+ L + E +R F + N+ + +++ + G+AF+ + + A +AI
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 57 LHGYSFCGLPLIVEPSVANKKM 78
+HG G + VE + M
Sbjct: 138 MHGKFLDGRVIFVEEAKTRSDM 159
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.1 bits (77), Expect = 0.009
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE-QNLTVAEISVKR-----GGYAFVDFPDQSAADRAIDKL 57
LYIG LP +++ + LF+ + +A++ R GY FV + D A+ A+ +
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 58 HGYSFCGLPLIV 69
+GY F G L V
Sbjct: 542 NGYRFEGRTLAV 553
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.1 bits (77), Expect = 0.009
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE-QNLTVAEISVKR-----GGYAFVDFPDQSAADRAIDKL 57
LYIG LP +++ + LF+ + +A++ R GY FV + D A+ A+ +
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 58 HGYSFCGLPLIV 69
+GY F G L V
Sbjct: 542 NGYRFEGRTLAV 553
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein,
putative similar to RNA binding protein(RZ-1)
GI:1435061 from [Nicotiana sylvestris]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 292
Score = 35.1 bits (77), Expect = 0.009
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQN-LTVAEISVKRG-----GYAFVDFPDQSAADRAID 55
+++++G L ++V E + F +T +I V R G+ F+ F D+ AD AI
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 56 KLHG 59
+HG
Sbjct: 72 HMHG 75
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein,
putative similar to RNA binding protein(RZ-1)
GI:1435061 from [Nicotiana sylvestris]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 292
Score = 35.1 bits (77), Expect = 0.009
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQN-LTVAEISVKRG-----GYAFVDFPDQSAADRAID 55
+++++G L ++V E + F +T +I V R G+ F+ F D+ AD AI
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIK 71
Query: 56 KLHG 59
+HG
Sbjct: 72 HMHG 75
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 34.7 bits (76), Expect = 0.012
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAE----QNLTV-AEISVKRGGYAFVDFPDQSAADRAIDKL 57
KLYI NL Y V +++LFAE + TV + S + G A V + + A A+ K
Sbjct: 87 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKY 146
Query: 58 HGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGSNGSPSGG 103
+ G P+ +E N + P S N SNG+P G
Sbjct: 147 NDVQLDGKPMKIEIVGTNLQTAAAP-----SGRPANGNSNGAPWRG 187
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 34.7 bits (76), Expect = 0.012
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAE----QNLTV-AEISVKRGGYAFVDFPDQSAADRAIDKL 57
KLYI NL Y V +++LFAE + TV + S + G A V + + A A+ K
Sbjct: 23 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKY 82
Query: 58 HGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGSNGSPSGG 103
+ G P+ +E N + P S N SNG+P G
Sbjct: 83 NDVQLDGKPMKIEIVGTNLQTAAAP-----SGRPANGNSNGAPWRG 123
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 34.7 bits (76), Expect = 0.012
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 10/106 (9%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAE----QNLTV-AEISVKRGGYAFVDFPDQSAADRAIDKL 57
KLYI NL Y V +++LFAE + TV + S + G A V + + A A+ K
Sbjct: 89 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKY 148
Query: 58 HGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGSNGSPSGG 103
+ G P+ +E N + P S N SNG+P G
Sbjct: 149 NDVQLDGKPMKIEIVGTNLQTAAAP-----SGRPANGNSNGAPWRG 189
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 34.7 bits (76), Expect = 0.012
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 3 KLYIGNLPYEVDEAAVRQLF------AEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDK 56
KL+I L + E +R F E + + +IS + GYAF+++ + AA A+ +
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342
Query: 57 LHGYSFCGLPLIVE 70
++G G ++V+
Sbjct: 343 MNGKIINGWMIVVD 356
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 34.7 bits (76), Expect = 0.012
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG------GYAFVDFPDQSAADRAIDKL 57
LY+ NL V + +R+LFAE T+ V R G FV F S A R ++++
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFG-TITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEM 388
Query: 58 HGYSFCGLPLIV 69
+G G PL V
Sbjct: 389 NGKMVGGKPLYV 400
Score = 30.7 bits (66), Expect = 0.20
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVA-EISV----KRGGYAFVDFPDQSAADRAID 55
+ L++ NL VD + + F+ V+ +++ + GY FV F + +A AI+
Sbjct: 133 VGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIE 192
Query: 56 KLHG 59
KL+G
Sbjct: 193 KLNG 196
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 34.7 bits (76), Expect = 0.012
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTV--AEISVKR-----GGYAFVDFPDQSAADRAIDK 56
+++G+L +V + + + F +V A++ + R GY FV F D+S RA+ +
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 57 LHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAA 90
++G P+ + P+ + K + + +SSAA
Sbjct: 217 MNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAA 250
Score = 29.1 bits (62), Expect = 0.61
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG------GYAFVDFPDQSAADRAIDKL 57
L+IG+L Y +DE + FA V+ ++ GY F++F +AA+R +
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 58 HGYSFCGLP 66
+ P
Sbjct: 124 NNAPIPSFP 132
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 34.7 bits (76), Expect = 0.012
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTV--AEISVKR-----GGYAFVDFPDQSAADRAIDK 56
+++G+L +V + + + F +V A++ + R GY FV F D+S RA+ +
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 57 LHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAA 90
++G P+ + P+ + K + + +SSAA
Sbjct: 217 MNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAA 250
Score = 29.1 bits (62), Expect = 0.61
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG------GYAFVDFPDQSAADRAIDKL 57
L+IG+L Y +DE + FA V+ ++ GY F++F +AA+R +
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQTF 123
Query: 58 HGYSFCGLP 66
+ P
Sbjct: 124 NNAPIPSFP 132
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 34.3 bits (75), Expect = 0.016
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVA------EISVKRGGYAFVDFPDQSAADRAIDKL 57
L+IG+L Y VDE + F++ V+ +I+ + GY F++F +AA+R +
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 58 HGYSFCGLPL 67
+G G L
Sbjct: 86 NGTQMPGTEL 95
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 34.3 bits (75), Expect = 0.016
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 38 GYAFVDFPDQSAADRAIDKLHGYSFCGLPLIVEPSVANKKM 78
G+ FV F + A RAI+KL+GY + L L VE S ++
Sbjct: 216 GFGFVSFVSREDAQRAINKLNGYGYDNLILRVEWSTPKTQL 256
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 34.3 bits (75), Expect = 0.016
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-----GYAFVDFPDQSAADRAIDKLH 58
LY+ NL +V E +R+ FAE V+ K GYAFV+F + A RA + ++
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 59 GYSF 62
G F
Sbjct: 263 GTKF 266
Score = 33.1 bits (72), Expect = 0.037
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAE-QNLTVAEISV----KRGGYAFVDFPDQSAADRAID 55
++ +Y+ N+ V E +R+ F++ +T ++ K G+ FV F A A+
Sbjct: 303 VSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVK 362
Query: 56 KLHGYSFCGLPLIVEPSVANKK 77
HG F G PL V ++A KK
Sbjct: 363 TFHGQMFHGKPLYV--AIAQKK 382
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 34.3 bits (75), Expect = 0.016
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVA-----EISVKRGGYAFVDFPDQSAADRAIDKLH 58
++I NL +D A+ + F+ ++ +++ + GY FV F + +A AIDKL+
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 59 G 59
G
Sbjct: 198 G 198
Score = 33.1 bits (72), Expect = 0.037
Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQ-NLTVAEISVK-RG---GYAFVDFPDQSAADRAIDKLH 58
LY+ NL VD+ ++++F+E N+T +++ + +G G+ FV + + A RA+ +++
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Query: 59 GYSFCGLPLIV 69
G PL +
Sbjct: 394 GKMIGRKPLYI 404
Score = 32.3 bits (70), Expect = 0.065
Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVK-RGG----YAFVDFPDQSAADRAIDKLH 58
+Y+ NLP E+ E +R+ F + + + + ++ + G + FV+F AA A++K++
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 59 GYS 61
G S
Sbjct: 291 GIS 293
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 33.9 bits (74), Expect = 0.021
Identities = 26/102 (25%), Positives = 54/102 (52%), Gaps = 8/102 (7%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAE----QNLTVAEISVKR-GGYAFVDFPDQSAADRAIDKL 57
KL++ N+ +E + +RQLF+ +++ + + ++ + GYAFV+F + A A L
Sbjct: 670 KLHVKNIAFEATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKAL 729
Query: 58 HGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGSNGS 99
F G L++E + + M + + SAA+ +E ++ +
Sbjct: 730 ASTHFYGRHLVLEWANDDNSM---EAIRKRSAAKFDEENDNA 768
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 33.9 bits (74), Expect = 0.021
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQN--LTVAEISVKRGGY----AFVDFPDQSAADRAIDK 56
KL++G++P E +R F + L VA I KR G FV + ADRAI
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 57 LH 58
LH
Sbjct: 181 LH 182
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 33.9 bits (74), Expect = 0.021
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQN--LTVAEISVKRGGY----AFVDFPDQSAADRAIDK 56
KL++G++P E +R F + L VA I KR G FV + ADRAI
Sbjct: 121 KLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRA 180
Query: 57 LH 58
LH
Sbjct: 181 LH 182
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 33.9 bits (74), Expect = 0.021
Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 9/103 (8%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISV-------KRGGYAFVDFPDQSAADRAIDK 56
+++G+L +V + + + F+++ +V V + GY FV F D++ RA+ +
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 57 LHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGSNGS 99
++G ++C + +A K + SS A + G +GS
Sbjct: 264 MNG-AYCS-NRQMRVGIATPKRAIANQQQHSSQAVILAGGHGS 304
Score = 31.9 bits (69), Expect = 0.086
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-GYAFVDFPDQSAADRAIDKLHG 59
+++G + +V + +RQ F++ V + + G G FV F D+ +A+ AI+ L+G
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFG-EVVSVKIPVGKGCGFVQFADRKSAEDAIESLNG 378
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-------GYAFVDFPDQSAADRAIDK 56
L++G+L + +DE + F+ V+ + V R GY FV+F ++AA+ +
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTG-EVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN 168
Query: 57 LHG 59
G
Sbjct: 169 YSG 171
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 33.9 bits (74), Expect = 0.021
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 32 ISVKRGGYAFVDFPDQSAADRAIDKLHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQ 91
IS + G +V+F D + AI L G G P++V+PS A K +V +
Sbjct: 218 ISRRSRGIGYVEFYDTMSVPMAI-ALSGQPLLGQPVMVKPSEAEKNLVQSTTAAAGAGGM 276
Query: 92 LNEGSNGS 99
L S G+
Sbjct: 277 LGPYSGGA 284
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor,
64 kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 33.9 bits (74), Expect = 0.021
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISV------KRGGYAFVDFPDQSAADRAIDKL 57
+++GN+PY+ E +R++ E V+ V K GY F ++ D+ A A L
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 58 HGYSFCGLPLIVE 70
Y G L V+
Sbjct: 71 QSYEINGRQLRVD 83
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 33.9 bits (74), Expect = 0.021
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVA--EISVKRGGYAFVDFPDQSAADRAIDKLHGYS 61
+Y+GN+ +V E ++++FA + I ++ Y FV + D+ +A AI L+G
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRH 115
Query: 62 FCGLPLIVEPSVAN 75
G P+ V + A+
Sbjct: 116 LFGQPIKVNWAYAS 129
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) /
9G8-like SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352,
9G8-like SR protein [Arabidopsis thaliana] GI:3435094;
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain) and PF00098: Zinc
knuckle; identical to cDNA 9G8-like SR protein (SRZ22)
GI:3435093
Length = 200
Score = 33.5 bits (73), Expect = 0.028
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-GYAFVDFPDQSAADRAIDKLHG 59
M+++Y+GNL V E + F + + +R GYAF+DF D A AI L G
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDG 60
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 33.5 bits (73), Expect = 0.028
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-GYAFVDFPDQSAADRAIDKLHG 59
M+++Y+GNL V E + F + + +R GYAF+DF D A AI ++ G
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDG 60
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 33.5 bits (73), Expect = 0.028
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTV-AEISVKR-----GGYAFVDFPDQSAADRAID 55
+K+++G + Y DE +R+ F++ V A+I V R G+AFV F A A+
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM- 92
Query: 56 KLHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQ-LNEGSNGSPSGGW 104
+L G G + V + ++G G+P+GG+
Sbjct: 93 QLDGQDLHGRRIRVNYATERGSGFGGRGFGGPGGGYGASDGGYGAPAGGY 142
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 33.5 bits (73), Expect = 0.028
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAE----QNLTVAEISVKRG-GYAFVDFPDQSAADRAIDK 56
+ LY+G+L V+E+ + LF + NL V R GYA+V+F + A RA++
Sbjct: 45 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMES 104
Query: 57 LH 58
L+
Sbjct: 105 LN 106
Score = 32.7 bits (71), Expect = 0.049
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVA-----EISVKRGGYAFVDFPDQSAADRAIDKLH 58
++I NL +D A+ + F+ ++ ++ + GY FV F + A AIDKL+
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLN 193
Query: 59 G 59
G
Sbjct: 194 G 194
Score = 28.7 bits (61), Expect = 0.80
Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQ-NLTVAEISV-KRG---GYAFVDFPDQSAADRAIDK 56
+ LY+ NL V++ ++++F+E N+T ++ + +G G+ FV + + A A+ +
Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKE 387
Query: 57 LHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGSNGSP 100
++G PL V ++A +K +L+ S Q+ SP
Sbjct: 388 MNGKMIGRKPLYV--ALAQRKEERQAHLQ-SLFTQIRSPGTMSP 428
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 33.5 bits (73), Expect = 0.028
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 38 GYAFVDFPDQSAADRAIDKLHGYSFCGLPLIVE 70
G AF+ FP A RA++ ++G+ F G P+I++
Sbjct: 398 GQAFLTFPSVEVAHRALNLVNGFVFKGKPMIIQ 430
Score = 29.9 bits (64), Expect = 0.35
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAE--ISVKRGGYAFVDFPDQSAADRAIDKLHGYS 61
L + +LP + V +LF++ + K AFVDF +++ A +A +L+G
Sbjct: 30 LLVRHLPDGIPHDIVSRLFSQYGASAVRPCSGGKLRNAAFVDFKNEAFASQAHRQLNGLR 89
Query: 62 FCGLPLIVEPSVA---NKKMVNV-PNLERSSAAQLNEGSNGSPSG 102
F G L V+ + NKK + ++ + +A +N S SG
Sbjct: 90 FLGKVLQVQRANKPNDNKKSRQIEESVTKGNAFSTVSTNNDSKSG 134
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 33.1 bits (72), Expect = 0.037
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-----GYAFVDFPDQSAADRAIDKLH 58
+Y+ NL + ++ F E + + +K G G+ FV+F + A RA++ L+
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 90
Query: 59 GYSF 62
G+ F
Sbjct: 91 GHKF 94
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 33.1 bits (72), Expect = 0.037
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-------GYAFVDFPDQSAADRAID 55
KL++G + +E DE +R+ F V++ V R G+ FV F D S DR +
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYG-EVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQ 65
Query: 56 KLH 58
+ H
Sbjct: 66 EKH 68
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 33.1 bits (72), Expect = 0.037
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISV--KRGGYAFVDFPDQSAADRAIDKLHG 59
N L+I NLP+E ++ LF EQ EI + + G AFV++ D A A+ L G
Sbjct: 158 NILFIQNLPHETTSMMLQLLF-EQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQG 216
Query: 60 Y 60
+
Sbjct: 217 F 217
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 32.7 bits (71), Expect = 0.049
Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAE-QNLTVAEISVKRG-----GYAFVDFPDQSAADRAID 55
+++++G L EV + + + F+ ++ +I ++R G+ F+ F D+ A D +I
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIR 66
Query: 56 KLHGYSF 62
++HG F
Sbjct: 67 EMHGRDF 73
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 32.7 bits (71), Expect = 0.049
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAE----QNLTVAEISVKRG--GYAFVDFPDQSAADRAID 55
NK+++G LP E +R F Q+ + + + G G+ FV F + ADR
Sbjct: 240 NKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVAR 299
Query: 56 KLHGYSFCGLPLIVE 70
+ H CG + ++
Sbjct: 300 RSH--EICGQEVAID 312
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 32.7 bits (71), Expect = 0.049
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFA--EQNLTVAEISVKRG---GYAFVDFPDQSAADRAIDK 56
+ LY+ NL ++E +R++F Q ++ + + G G+ FV F + + +A
Sbjct: 304 SNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRY 363
Query: 57 LHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQ 91
L+G+ G P++V VA +K + L++ AQ
Sbjct: 364 LNGFLVDGKPIVVR--VAERKEDRIKRLQQYFQAQ 396
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 32.7 bits (71), Expect = 0.049
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKR--GGYAFVDFPDQSAADRAIDKLHGYS 61
+Y+GN+ +V E ++++F + +++ Y FV + D+ +A AI L+G
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGRH 120
Query: 62 FCGLPLIV 69
G P+ V
Sbjct: 121 LFGQPIKV 128
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 32.7 bits (71), Expect = 0.049
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKR-------GGYAFVDFPDQSAADRAID 55
KL+IG + ++ DE +R+ F+ V +++V R G+ FV F D + DR +
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFG-EVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ 65
Query: 56 KLH 58
H
Sbjct: 66 DKH 68
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 32.7 bits (71), Expect = 0.049
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE-QNLTVAEISVKRGGYA----FVDFPDQSAADRAIDKLH 58
LY+ NL VD + +LF+E +T ++ V G + FV+F A +A+ K++
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 59 GYSFCGLPLIV 69
G P+ V
Sbjct: 285 GKMVGNKPIYV 295
Score = 29.9 bits (64), Expect = 0.35
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGG-----YAFVDFPDQSAADRAIDKLH 58
+Y+ NL +A +++LF E + + +K G + FV+F AA AI+K++
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMN 180
Query: 59 G 59
G
Sbjct: 181 G 181
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 32.3 bits (70), Expect = 0.065
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISV------KRGGYAFVDFPDQSAADRAI 54
+ KL+IG + ++ DE +++ F + V + + + G+ F+ F D S A+R I
Sbjct: 14 LGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVI 73
Query: 55 DKLH 58
H
Sbjct: 74 MDKH 77
Score = 30.3 bits (65), Expect = 0.26
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISV-------KRGGYAFVDFPDQSAADRAID 55
K+++G LP + EA + F +Q T+A++ V + G+ F+ F + + D +
Sbjct: 123 KIFVGGLPSSITEAEFKNYF-DQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLH 181
Query: 56 KLHGYSFCGLPLIVEPSVANKKMVNVPN 83
K + G + V+ +V + PN
Sbjct: 182 KTF-HELNGKMVEVKRAVPKELSSTTPN 208
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 32.3 bits (70), Expect = 0.065
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISV 34
+LY+GNLPY + + + Q+F E TV ++ +
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAG-TVVDVQI 147
Score = 30.7 bits (66), Expect = 0.20
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQ-NLTVAEISVKRG-----GYAFVDFPDQSAADRAID 55
+K+Y GNL + + ++ F +Q + A++ +R G+ F+ F A+
Sbjct: 219 HKVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALA 278
Query: 56 KLHGYSFCGLPLIVE-PSVANKKMVNVPNLERSSAAQLNEGSN 97
++G G L + S K V+ P++E + + SN
Sbjct: 279 TMNGVEVEGRALRLNLASEREKPTVSPPSVEEGETEEASLESN 321
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 32.3 bits (70), Expect = 0.065
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNL--TVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYS 61
+Y GN+ +V E ++++FA + I + Y FV + D+ A AI L+G
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRH 124
Query: 62 FCGLPLIV 69
G P+ V
Sbjct: 125 IFGQPMKV 132
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNL-TVAEISVKRG-GYAFVDFPDQSAADRAI 54
+Y+GNL EV + + +LF + E+ V+R G+ FV + A AI
Sbjct: 275 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAI 327
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 32.3 bits (70), Expect = 0.065
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNL--TVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYS 61
+Y GN+ +V E ++++FA + I + Y FV + D+ A AI L+G
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRH 124
Query: 62 FCGLPLIV 69
G P+ V
Sbjct: 125 IFGQPMKV 132
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNL-TVAEISVKRG-GYAFVDFPDQSAADRAI 54
+Y+GNL EV + + +LF + E+ V+R G+ FV + A AI
Sbjct: 271 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAI 323
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 32.3 bits (70), Expect = 0.065
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-------GYAFVDFPDQSAADRAIDK 56
L++G+L + +DE + F+ N V+ + V R GY FV+F +SAA+ A+
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTN-EVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQS 179
Query: 57 LHG 59
G
Sbjct: 180 FSG 182
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 32.3 bits (70), Expect = 0.065
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISV-------KRGGYAFVDFPDQSAADRAIDK 56
+++G+L +V +A + + F+E+ +V V + GY FV F D++ +A+ +
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260
Query: 57 LHGYSFCGLPLIVEPSVANK 76
++G + + P+ K
Sbjct: 261 MNGVKCSSRAMRIGPATPRK 280
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE-QNLTVAEISVKRG-------GYAFVDFPDQSAADRAID 55
+++G+L +DEA + F + + + V R GY FV+F AD+ +
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 56 KLHG 59
+ +G
Sbjct: 165 EFNG 168
>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 228
Score = 32.3 bits (70), Expect = 0.065
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISV--KRGGYAFVDFPDQSAADRAIDKLHG 59
N L+I NLP E + ++ LF EQ EI + + G AFV++ D + A+ L G
Sbjct: 154 NILFIHNLPIETNSMMLQLLF-EQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQG 212
Query: 60 Y 60
+
Sbjct: 213 F 213
>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 229
Score = 32.3 bits (70), Expect = 0.065
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISV--KRGGYAFVDFPDQSAADRAIDKLHG 59
N L+I NLP E + ++ LF EQ EI + + G AFV++ D + A+ L G
Sbjct: 155 NILFIHNLPIETNSMMLQLLF-EQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQG 213
Query: 60 Y 60
+
Sbjct: 214 F 214
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 31.9 bits (69), Expect = 0.086
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 2 NKLYIGNLPYEVDEAAVRQLF------AEQNLTVAEISVKRGGYAFVDFPDQSAADRAID 55
+K+ + NLP+ E +++ F AE L E + GYAF+ F Q A AI+
Sbjct: 40 SKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIE 99
Query: 56 KLHGYSFCGLPLIVEPSVANKK 77
+ + G + ++ + K+
Sbjct: 100 TMDRRMYNGRMIYIDIAKPGKR 121
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 31.9 bits (69), Expect = 0.086
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAE------QNLTVAEISVKRGGYAFVDFPDQSAADRAIDK 56
+ ++G L + DE ++ + F E + + + + G+ FV F D+ + AID+
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDR 104
Query: 57 LHGYSFCG 64
++G G
Sbjct: 105 MNGQELDG 112
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 31.9 bits (69), Expect = 0.086
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAE-----QNLTVAEISVKRG-GYAFVDFPDQSAADRA 53
K+++G L +E +RQ F + + + +A+ + R GY FV F D AA RA
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRA 81
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative
/ PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 31.5 bits (68), Expect = 0.11
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVK--RG---GYAFVDFPDQSAADRAIDKLH 58
LYI NL +V E + +F++ + + K RG G+AF++F +A RA+ +
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLHMD 78
Query: 59 G 59
G
Sbjct: 79 G 79
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 31.5 bits (68), Expect = 0.11
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISV-------KRGGYAFVDFPDQSAADRAIDK 56
L++ NL +E +++ F V V + GY FV F + A+ A+ +
Sbjct: 191 LFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIE 250
Query: 57 LHGYSFCGLPL 67
G F G P+
Sbjct: 251 FQGKDFLGRPI 261
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 31.5 bits (68), Expect = 0.11
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQ----NLTVAEISVKR--GGYAFVDFPDQSAADRAIDKL 57
+Y+G L ++ E + +LF + N+ V + V Y F+++ + AD AI L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 58 HGYSFCGLPLIVEPSVANKKMVNV 81
+ G P+ V + +KK ++V
Sbjct: 87 NMIKLHGKPIRVNKASQDKKSLDV 110
Score = 29.5 bits (63), Expect = 0.46
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-------GYAFVDFPDQSAADRAIDK 56
L+IGNL +VDE + F+ + + + R G+ F+ + A+D AI+
Sbjct: 114 LFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIES 173
Query: 57 LHG 59
+ G
Sbjct: 174 MTG 176
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 31.1 bits (67), Expect = 0.15
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISV----KRGGYAFVDFPDQSAADRAIDKLHG 59
LY+ NLP+ + + +F + + +I + G AFV + D A A+D L G
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYG-AIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSG 79
Query: 60 YSFCGLPLIV 69
++ LIV
Sbjct: 80 FNVANRYLIV 89
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 31.1 bits (67), Expect = 0.15
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 38 GYAFVDFPDQSAADRAIDKLHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGSN 97
GY FV F D+S RA+ +++G P+ P+ ANKK P + ++ Q +G++
Sbjct: 216 GYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPA-ANKK----PLTMQPASYQNTQGNS 270
Query: 98 G 98
G
Sbjct: 271 G 271
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFA-EQNLTVAEI--SVKRG---GYAFVDFPDQSAADRAI 54
+ L+IG+L +DE + +F T A++ + + G GY F++F + + A+R +
Sbjct: 79 IRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNL 138
Query: 55 DKLHG 59
+G
Sbjct: 139 QTYNG 143
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 31.1 bits (67), Expect = 0.15
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-------GYAFVDFPDQSAADRAI 54
+++Y+G +P + E ++ F V E+ + R GYAFV F + A AI
Sbjct: 92 SEVYLGGIPTDATEGDLKG-FCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAI 150
Query: 55 DKLHGYSFCGLPLIVEPSVANKKMV--NVP 82
D L+ F G + + A ++ NVP
Sbjct: 151 DTLNNTDFRGKRIKCSTTQAKHRLFLGNVP 180
Score = 29.9 bits (64), Expect = 0.35
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQN--LTVAEISVKRG----GYAFVDFPDQSAADRAIDKL 57
LYI NLP ++ + ++ LF L V K G Y FV + ++++ RA+
Sbjct: 270 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNT 329
Query: 58 HGYSFCGLPL---IVEPSVANKKMVN-VPNLERS 87
Y G L + +P K N V N+++S
Sbjct: 330 ERYEIDGHMLDCTLAKPQADQKTNTNTVQNVQKS 363
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 31.1 bits (67), Expect = 0.15
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAE------QNLTVAEISVKRGGYAFVDFPDQSAADRAID 55
+++++G LPY E +R+L NL + GYAF + D S D A
Sbjct: 375 DRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACA 434
Query: 56 KLHGYSFCGLPLIVEPSV 73
L+G L V ++
Sbjct: 435 ALNGIKMGDKTLTVRRAI 452
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 30.7 bits (66), Expect = 0.20
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVA------EISVKRGGYAFVDFPDQSAADRAI 54
+ L+IG+L +DE + +FA+ + +++ + GY F++F S A+R +
Sbjct: 59 VKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVL 118
Query: 55 DKLHG 59
+G
Sbjct: 119 QTYNG 123
Score = 29.5 bits (63), Expect = 0.46
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 38 GYAFVDFPDQSAADRAIDKLHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGSN 97
GY FV F D++ RA+ +++G P+ + P+ ANK + + + N G N
Sbjct: 197 GYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPA-ANKNALPMQPAMYQNTQGANAGDN 255
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 30.7 bits (66), Expect = 0.20
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVA-EISVKRGGY----AFVDFPDQSAADRAIDKLH 58
LY+ LP + + F + V+ +++ KR G FV+F + A +A+D +
Sbjct: 566 LYVCCLPRDTKMPDIIDFFKDVGQVVSVQLTTKRNGLRLSTGFVEFASANEAKKALDMKN 625
Query: 59 GYSFCGLPLIV 69
G CG LI+
Sbjct: 626 GEYLCGNKLIL 636
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) /
9G8-like SR protein (SRZ21) nearly identical to
9G8-like splicing factor SRZ21 [Arabidopsis thaliana]
GI:3435096, RSZp21 protein [Arabidopsis thaliana]
GI:2582643
Length = 187
Score = 30.7 bits (66), Expect = 0.20
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLF-AEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKL 57
M ++Y+GNL V E + F A L ++ + GYAF++F D+ A AI L
Sbjct: 1 MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISAL 58
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) /
9G8-like SR protein (SRZ21) nearly identical to
9G8-like splicing factor SRZ21 [Arabidopsis thaliana]
GI:3435096, RSZp21 protein [Arabidopsis thaliana]
GI:2582643
Length = 187
Score = 30.7 bits (66), Expect = 0.20
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLF-AEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKL 57
M ++Y+GNL V E + F A L ++ + GYAF++F D+ A AI L
Sbjct: 1 MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISAL 58
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 30.3 bits (65), Expect = 0.26
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISV------KRGGYAFVDFPDQSAADRAI 54
+ KL+IG + ++ DE +R F+ V + + + G+ F+ F D ++R I
Sbjct: 5 LGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64
Query: 55 DKLH 58
H
Sbjct: 65 MDKH 68
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 30.3 bits (65), Expect = 0.26
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISV------KRGGYAFVDFPDQSAADRAI 54
+ KL+IG + ++ DE +R F+ V + + + G+ F+ F D ++R I
Sbjct: 5 LGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64
Query: 55 DKLH 58
H
Sbjct: 65 MDKH 68
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 30.3 bits (65), Expect = 0.26
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISV------KRGGYAFVDFPDQSAADRAI 54
+ KL+IG + ++ DE +R F+ V + + + G+ F+ F D ++R I
Sbjct: 5 LGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI 64
Query: 55 DKLH 58
H
Sbjct: 65 MDKH 68
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 30.3 bits (65), Expect = 0.26
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTV-AEIS-----VKRGGYAFVDFPDQSAADRAIDK 56
K+Y+GNL V + + LF+E+ V A++S K G+ FV F + + AI
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 57 LH 58
L+
Sbjct: 238 LN 239
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 30.3 bits (65), Expect = 0.26
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQN--LTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYS 61
L I NL EV +RQ+F + E K+ FV+F D A RA D+++G
Sbjct: 215 LVIFNLDPEVSSITLRQIFQVYGPIKELRETPYKKH-QRFVEFYDVRDAARAFDRMNGKE 273
Query: 62 FCGLPLIVE 70
G +++E
Sbjct: 274 IGGKQVVIE 282
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 29.5 bits (63), Expect = 0.46
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 38 GYAFVDFPDQSAADRAIDKLHGYSFCGLPLIVEPSVANKKM 78
G +++F D + AI L G F G P++V+PS A K +
Sbjct: 210 GVGYIEFYDVMSVPMAI-ALSGQLFLGQPVMVKPSEAEKNL 249
Score = 27.9 bits (59), Expect = 1.4
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 3 KLYIGNLPYEVDEAAVRQLF 22
KLY+GNL + + E +RQ+F
Sbjct: 266 KLYVGNLHFNMSELQLRQIF 285
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 29.5 bits (63), Expect = 0.46
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE-QNLTVAEISVKRG-------GYAFVDFPDQSAADRAID 55
+++G+L + +DEA + FA + + V R GY FV+F AD+ +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 56 KLHG 59
+ +G
Sbjct: 163 EFNG 166
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 29.5 bits (63), Expect = 0.46
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE-QNLTVAEISVKRG-------GYAFVDFPDQSAADRAID 55
+++G+L + +DEA + FA + + V R GY FV+F AD+ +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 56 KLHG 59
+ +G
Sbjct: 163 EFNG 166
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 29.1 bits (62), Expect = 0.61
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAE------QNLTVAEISVKRGGYAFVDFPDQSAADRAID 55
+++++G LPY E+ VR+L +L + GYAF + D S D A
Sbjct: 359 DRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 418
Query: 56 KLHG 59
L+G
Sbjct: 419 ALNG 422
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 29.1 bits (62), Expect = 0.61
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAE------QNLTVAEISVKRGGYAFVDFPDQSAADRAID 55
+++++G LPY E+ VR+L +L + GYAF + D S D A
Sbjct: 359 DRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 418
Query: 56 KLHG 59
L+G
Sbjct: 419 ALNG 422
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 29.1 bits (62), Expect = 0.61
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAE------QNLTVAEISVKRGGYAFVDFPDQSAADRAID 55
+++++G LPY E+ VR+L +L + GYAF + D S D A
Sbjct: 359 DRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAFCVYQDLSVTDIACA 418
Query: 56 KLHG 59
L+G
Sbjct: 419 ALNG 422
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 28.7 bits (61), Expect = 0.80
Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAE-----QNLTVAEISVKRG-GYAFVDFPDQSAADRAIDK 56
K+++G +P V E ++ FA+ ++ + + R G+ FV F + D + K
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
Query: 57 LHGYSFCGLPLIVEPSVANKKMVNVP----NLERSSAAQLNEGSNGSPSGGW 104
+ + ++ + K + P + R ++ + S G P GG+
Sbjct: 170 GNMIDMADTQVEIKKAEPKKSLNRSPPSYGSHPRGRSSNDSYASYGGPYGGF 221
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 28.7 bits (61), Expect = 0.80
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 3 KLYIGNLPYEVDEAAVRQLF------AEQNLTVAEISVKRGGYAFVDFPDQSAADRAI 54
K+++G L +E +R+ F E + + + K GY FV F D +A RA+
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAV 75
>At5g52545.1 68418.m06521 expressed protein
Length = 132
Score = 28.3 bits (60), Expect = 1.1
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Query: 50 ADRAIDKLHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGS-----NGSPSG 102
A+ A +K+HG CG PL+V +A++K + + + S + L EG+ NGS SG
Sbjct: 47 AELAKEKMHGRLACGRPLVVR--LASEKHLEDSSHDHSKRS-LPEGNRTRFVNGSSSG 101
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 28.3 bits (60), Expect = 1.1
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 16/114 (14%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEI------SVKRGGYAFVDFPDQSAADRAIDK 56
K+++G L V EA ++ FA+ + + + + G+ F+ + + A D+ + K
Sbjct: 34 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 93
Query: 57 ----LHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQ----LNEGSNG-SPS 101
L+G + L V +A M N N+ ++ LNE + G SPS
Sbjct: 94 TFHELNG-KMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPS 146
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 28.3 bits (60), Expect = 1.1
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 16/114 (14%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEI------SVKRGGYAFVDFPDQSAADRAIDK 56
K+++G L V EA ++ FA+ + + + + G+ F+ + + A D+ + K
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166
Query: 57 ----LHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQ----LNEGSNG-SPS 101
L+G + L V +A M N N+ ++ LNE + G SPS
Sbjct: 167 TFHELNG-KMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPS 219
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 28.3 bits (60), Expect = 1.1
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 16/114 (14%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEI------SVKRGGYAFVDFPDQSAADRAIDK 56
K+++G L V EA ++ FA+ + + + + G+ F+ + + A D+ + K
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQK 166
Query: 57 ----LHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQ----LNEGSNG-SPS 101
L+G + L V +A M N N+ ++ LNE + G SPS
Sbjct: 167 TFHELNG-KMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPS 219
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQN--LTVAEISVKRGGYAFVDFPDQSAADRAIDKLHG 59
N L+IGNL ++E +R L + Q + + +R F++F D ++A L G
Sbjct: 233 NTLFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFEDVNSATNVHHNLQG 292
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 4 LYIGNLPYEVD----EAAVRQLFAEQNLTVAEISVKRGGY--AFVDFPDQSAADRAID 55
+Y+ +LP+ + EA +Q A N + I+ + GY FV+F + AA RAI+
Sbjct: 321 IYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYPYGFVEFEEADAAHRAIE 378
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 1 MNKLYIGNLPYEVDEAAVRQLFAE-----QNLTVAEISVKRG-GYAFVDFPDQSAADRAI 54
+ K+++G L ++ + A+ F + + + +++ +R GY FV F D AA RA
Sbjct: 16 LTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRAC 75
Query: 55 D 55
+
Sbjct: 76 E 76
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 39 YAFVDFPDQSAADRAIDKLHGYSFCGLPLIVEPS 72
YAFV+F D AD A L G F G + VE S
Sbjct: 5 YAFVEFSDPRDADDARYYLDGRDFDGSRITVEAS 38
>At1g73700.1 68414.m08534 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 7 GNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQ-SAADRAIDKLHGYSFCGL 65
G LP V E +V + +LT+ +ISV GG A + ++ A + + KL Y G+
Sbjct: 275 GLLPNPVLETSVLSICLNTSLTIWQISVGLGGAASIRVSNELGAGNPQVAKLAVYVIVGI 334
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 27.5 bits (58), Expect = 1.9
Identities = 21/108 (19%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAE-----QNLTVAEISVKRG-GYAFVDFPDQSAADRAIDK 56
K+++G +P VD+ ++ F + ++ + + S R G+ FV + + D + K
Sbjct: 131 KIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAK 190
Query: 57 LHGYSFCGLPLIVEPSVANK-KMVNVPNLERSSAAQLNEGSNGSPSGG 103
+ G + ++ + K V P+ + G G GG
Sbjct: 191 GNRIELSGTQVEIKKAEPKKPNSVTTPSKRFGDSRSNFGGGYGDGYGG 238
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAE 24
KLYI NL Y V +++LF+E
Sbjct: 109 KLYISNLDYGVSNEDIKELFSE 130
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 27.5 bits (58), Expect = 1.9
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 6 IGNLPYEVDEAAVRQLF---AEQNLTVAEISVKRG-GYAFVDFPDQSAADRAI 54
+ NLP A V F E E+ KR Y FV+F +++AA RAI
Sbjct: 1080 VKNLPLNATIALVENAFKQFGEIRRGGVEVRNKRSFSYGFVEFKEENAAQRAI 1132
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 37 GGYAFVDFPDQSAADRAI 54
G YA+V+F + AA+RAI
Sbjct: 486 GKYAYVEFEEAEAANRAI 503
>At5g12080.2 68418.m01415 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile
PF00924: Mechanosensitive ion channel
Length = 734
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 37 GGYAFVDFPDQSAADRAIDKLHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEG 95
GG ++ P + A+ R+ + S G+P PS K+V PN + Q N G
Sbjct: 13 GGDVVINVPVEEASRRSKEMASPESEKGVPFSKSPSPEISKLVGSPNKPPRAPNQNNVG 71
>At5g12080.1 68418.m01414 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile
PF00924: Mechanosensitive ion channel
Length = 734
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/59 (28%), Positives = 26/59 (44%)
Query: 37 GGYAFVDFPDQSAADRAIDKLHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEG 95
GG ++ P + A+ R+ + S G+P PS K+V PN + Q N G
Sbjct: 13 GGDVVINVPVEEASRRSKEMASPESEKGVPFSKSPSPEISKLVGSPNKPPRAPNQNNVG 71
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain), PF00098: Zinc knuckle
Length = 249
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 39 YAFVDFPDQSAADRAIDKLHGYSFCGLPLIVE 70
YAFV+F D AD A L G F G + VE
Sbjct: 5 YAFVEFGDPRDADDARHYLDGRDFDGSRITVE 36
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis];
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 271
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISV------KRGGYAFVDFPDQSAADRAI 54
K+++G L +E +R+ F + + + + K GY FV F + +A RA+
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis];
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 287
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAEQNLTVAEISV------KRGGYAFVDFPDQSAADRAI 54
K+++G L +E +R+ F + + + + K GY FV F + +A RA+
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVA------EISVKRGGYAFVDFPDQSAADRAIDKL 57
L++G L + +A + + ++ +S K GY V+F D +AA + +
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAAACKEGM 263
Query: 58 HGYSFCGLPLIV 69
+G+ F G +V
Sbjct: 264 NGFIFNGKACVV 275
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAE------QNLTVAEISVKRGGYAFVDFPDQSAADRA 53
K+Y+G LP+ + + F N+ + + GY FV F D +A RA
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRA 70
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 26.6 bits (56), Expect = 3.2
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 4 LYIGNLPYEVDEAAVRQLF-AEQNL--TVAEISVKRG-------GYAFVDFPDQSAADRA 53
+++GNLP++V + V QLF + NL ++ + V R G A+V F + AA+
Sbjct: 285 VFMGNLPFDVKDEEVYQLFTGKSNLENSIEAVRVIRDPHLNIGKGIAYVLFKTREAANLV 344
Query: 54 IDK 56
+ K
Sbjct: 345 LKK 347
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 26.6 bits (56), Expect = 3.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 38 GYAFVDFPDQSAADRAIDKLHGY 60
GY F++F A A +K HGY
Sbjct: 106 GYCFIEFNTPQEAQNAKEKSHGY 128
>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
subunit 9, putative / eIF-3 eta, putative / eIF3b,
putative nearly identical to SP|Q9C5Z1 Eukaryotic
translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p110) (eIF3b) {Arabidopsis thaliana}
Length = 714
Score = 26.6 bits (56), Expect = 3.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 38 GYAFVDFPDQSAADRAIDKLHGY 60
GY F++F A A +K HGY
Sbjct: 107 GYCFIEFNTPQEAQNAKEKSHGY 129
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 26.6 bits (56), Expect = 3.2
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-------GYAFVDFPDQSAADRAIDK 56
L + NL ++ + +R+ F EQ V +I + R G+ F+ F D + A A +
Sbjct: 39 LLVRNLRHDCRQEDLRRPF-EQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQ 97
Query: 57 LHGYSFCGLPLIVEPSVANKK 77
+ GY G L V + N+K
Sbjct: 98 MDGYLLLGRELTVVFAEENRK 118
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 3 KLYIGNLPYEVDEAAVRQLFAE-----QNLTVAEISVKRG-GYAFVDFPDQSAADRAIDK 56
K+++G +P V E ++ FA+ ++ + + R G+ FV F + D + K
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSK 169
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE----QNLTVAE--ISVKRGGYAFVDFPDQSAADRAIDKL 57
L++G L + E +R++ ++ +NL + ++ GY FV++ + RA +
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 58 HGYSFCGLPLIVE 70
H G +IV+
Sbjct: 126 HHSLIDGREIIVD 138
>At5g03190.1 68418.m00267 expressed protein
Length = 451
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 11 YEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPD 46
Y +D A F + N +V VK+ G FV PD
Sbjct: 314 YPLDSKAFNVYFVDHNTSVMLSYVKKPGVTFVYHPD 349
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 26.2 bits (55), Expect = 4.3
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 39 YAFVDFPDQSAADRAIDKLHGYSFCGLPLIVE---PSVANKKMV--NVPNLER-SSAAQL 92
+ FV+F D +AD A+ L+ G + +E P A + M+ P LE+ S + L
Sbjct: 260 HKFVEFFDVRSADAALKALNRTEIAGKRIKLEHSRPGGARRNMMLQMNPELEQDDSYSYL 319
Query: 93 NEGSN---GSPSGGWR 105
N + SP G WR
Sbjct: 320 NHVESPLASSPIGNWR 335
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 26.2 bits (55), Expect = 4.3
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAEISV-KRGGYAFVDFPDQSAADRAIDKLHGY 60
N L++G+L E E+ + +LF + I+V G+AF+ + A A + L G
Sbjct: 18 NNLWVGSLTPETTESDLTELFGRYG-DIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGA 76
Query: 61 SFCG 64
+ G
Sbjct: 77 NLNG 80
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 26.2 bits (55), Expect = 4.3
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 2 NKLYIGNLPYEVDEAAVRQLFAEQNLTVAE--ISVKRGG----YAFVDFPDQSAADRAID 55
+K+Y+GNLP+ +R F++ V+ + ++ G +AF+ F D A+
Sbjct: 212 HKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL- 270
Query: 56 KLHGYSFCGLPLIVEPSV 73
+G + G +IV +
Sbjct: 271 SFNGTQYEGRRIIVREGI 288
>At5g28390.1 68418.m03447 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 180
Score = 25.8 bits (54), Expect = 5.7
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQN--LTVAEISVKRG----GYAFVDFPDQSAADRAIDKL 57
LYI NLP ++ + ++ LF L V K G Y FV + ++++ RA+
Sbjct: 36 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNT 95
Query: 58 HGY 60
Y
Sbjct: 96 ERY 98
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 25.8 bits (54), Expect = 5.7
Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 8/106 (7%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-------GYAFVDFPDQSAADRAIDK 56
L + N+P + +R+ F E+ V ++ + R G+AFV+F D A A
Sbjct: 49 LLVRNIPLDCRPEELREPF-ERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRS 107
Query: 57 LHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGSNGSPSG 102
++ SF G + V + ++K ++ + ++ GS G
Sbjct: 108 MNRRSFAGREITVVVASESRKRPEEMRVKTRTRSREPSGSRDRSHG 153
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 25.8 bits (54), Expect = 5.7
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLT--VAEISVKRGGYAFVDFPDQSAADRAIDKLHGYS 61
L I NL V + +R +F V E KR FV+F D A +A+ ++G
Sbjct: 185 LVIMNLEPTVSSSTLRHIFQVYGEVKQVRETPCKRE-QRFVEFFDVRDAAKALRVMNGKV 243
Query: 62 FCGLPLIVE 70
G P++++
Sbjct: 244 ISGKPMVIQ 252
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 25.8 bits (54), Expect = 5.7
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 4 LYIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRG-------GYAFVDFPDQSAADRAIDK 56
L + NL ++ + +R+ F EQ V +I + R G+ FV F D + A A
Sbjct: 38 LLVRNLRHDCRQEDLRKSF-EQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHH 96
Query: 57 LHGYSFCGLPLIVEPSVANKK 77
+ GY G L V + N+K
Sbjct: 97 MDGYLLLGRELTVVFAEENRK 117
>At1g10150.1 68414.m01144 expressed protein similar to ESTs
gb|T20511, gb|T45308, gb|H36493, and gb|AA651176
Length = 414
Score = 25.8 bits (54), Expect = 5.7
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 46 DQSAADRAIDKLHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAAQLNEGSNGSPSGGW 104
D S DR IDK+ + G +V S A ++ + + S + EGS+ S + W
Sbjct: 140 DSSVVDRVIDKVFSEAGTGFVSVVVGSFAKNLVLGFYSGKVESGVKC-EGSDSSETPRW 197
>At5g16920.1 68418.m01983 expressed protein
Length = 256
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 52 RAIDKLHGYSFCGLPLIVEPSVANKKMVNVPNLERSSAA 90
RAI + H +FC L +IV S +K +VPN S A
Sbjct: 2 RAI-QTHVITFCMLVIIVTSSTRAQKSPHVPNNHELSIA 39
>At3g59020.1 68416.m06578 importin beta-2 subunit family protein
similar to D-Importin 7/RanBP7 [Drosophila melanogaster]
GI:7542336; contains Pfam profile PF03810: Importin-beta
N-terminal domain
Length = 1112
Score = 25.4 bits (53), Expect = 7.5
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 10 PY--EVDEAAVRQLFAEQNLTVAEISVKR----GGYAFVDFPDQSAADRAID-KLHGYSF 62
PY E++ V+ +F E + + K G YA +DF DQS +A+ + G
Sbjct: 490 PYKSELENMLVQHVFPEFSSPAGHLRAKAAWVAGQYANIDFSDQSNFSKALHCVISGMCD 549
Query: 63 CGLPLIVEPSVANKKMV 79
LP+ V+ A + +
Sbjct: 550 LELPVRVDSVFALRSFI 566
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 25.4 bits (53), Expect = 7.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 38 GYAFVDFPDQSAADRAIDKL 57
G+AF+DFP AA +D++
Sbjct: 340 GFAFIDFPTVDAARTMMDRI 359
>At5g56960.1 68418.m07110 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 466
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 44 FPDQSAADRAIDKLHGYSFCGLPLIVEPSVANKKMVNVPNL 84
+P S++ + + + YS PLI +PS + VNVP L
Sbjct: 119 YPSSSSSSLSPNNISEYSSLLFPLIPKPSTTT-EAVNVPVL 158
>At5g19730.1 68418.m02346 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 383
Score = 25.0 bits (52), Expect = 9.9
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 5 YIGNLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSAADRAIDKLHGYSFCG 64
++G+L + V +AA +LF LTV + S K D + AID L +F
Sbjct: 63 FVGSLKHSVFKAAKNKLFPSYTLTVHKKSNK---------GDFTKIQDAIDSLPLINFVR 113
Query: 65 LPLIVEPSVANKKMVNVPNLE 85
+ + V V +K V++P L+
Sbjct: 114 VVIKVHAGVYKEK-VSIPPLK 133
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 4 LYIGNLPYEVDEAAVRQLFAE--QNLTVAEISVKRG---GYAFVDFPDQSAADRAID 55
L+ GNL Y++ + + F E + + V S G GY ++F A +A++
Sbjct: 386 LFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKALE 442
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 8 NLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSA-----ADRAIDKLHGYS 61
NLP+E+D A +R+L + + + +RG + + P Q D ++K GYS
Sbjct: 259 NLPWELDAAMLRRLEKRILVPLPDPEARRGMFEML-IPSQPGDEPLPHDVLVEKSEGYS 316
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 8 NLPYEVDEAAVRQLFAEQNLTVAEISVKRGGYAFVDFPDQSA-----ADRAIDKLHGYS 61
NLP+E+D A +R+L + + + +RG + + P Q D ++K GYS
Sbjct: 250 NLPWELDAAMLRRLEKRILVPLPDPEARRGMFEML-IPSQPGDEPLPHDVLVEKSEGYS 307
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.133 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,021
Number of Sequences: 28952
Number of extensions: 88913
Number of successful extensions: 414
Number of sequences better than 10.0: 151
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 196
length of query: 105
length of database: 12,070,560
effective HSP length: 71
effective length of query: 34
effective length of database: 10,014,968
effective search space: 340508912
effective search space used: 340508912
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 52 (25.0 bits)
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