Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000514-TA|BGIBMGA000514-PA|undefined
(118 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 28 0.44
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 28 0.44
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.0
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 1.8
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 25 2.4
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 4.1
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 25 4.1
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 24 5.5
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 24 7.2
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ... 23 9.6
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.9 bits (59), Expect = 0.44
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 1 MPTMPNMPPAVDRNLKPRPSSHN 23
+ +MPN PP+V N K P+S+N
Sbjct: 1937 LSSMPNAPPSVASNAKLPPASNN 1959
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 27.9 bits (59), Expect = 0.44
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 23 NMSQISHISGQPHLQIYQPAKPRSDVLQYLDLDLQAAKPDAKGSHEMLRKRTGIIHGKSR 82
N Q + +P I + +S L ++D D A + SHE+ K + HG
Sbjct: 253 NEIQAMTTASEPVRPIMKDKSKKSRFLLHVDFDCFFASVSTRFSHELRLKPVAVAHGIKN 312
Query: 83 SD 84
S+
Sbjct: 313 SE 314
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 26.6 bits (56), Expect = 1.0
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query: 27 ISHISGQPHLQIYQPAKP--RSDVLQYLDLDLQAAKPDAKGSHEMLRKRTGIIHGKSRSD 84
ISH L I P P RS +L L + SHE + T + S +
Sbjct: 89 ISHKGTTTKLHILHPPNPATRSYMLTQL-FQINTHGTVVNSSHETIASATSLFENSSSNF 147
Query: 85 SETPYKTVDFLKTEAFNITRQDA 107
SE P K ++AF ++D+
Sbjct: 148 SEDPNKP---NSSDAFESNKEDS 167
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.8 bits (54), Expect = 1.8
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 3 TMPNMPPAVDRNLKPRPSSHNMSQISHISGQPHLQIYQPAKPRSDVL 49
T+P++PP + +P+PSS + + +S L+ P P +L
Sbjct: 459 TVPDLPPLGSLSSRPKPSSSSRRRSQSLSAM--LKTSNPYMPSPSLL 503
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 25.4 bits (53), Expect = 2.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 6 NMPPAVDRNLKPRPSSHNMSQISHISGQP 34
++PP V NL P+ N + SH G P
Sbjct: 534 SLPPIVKPNLMSEPTPTNSDEKSHALGFP 562
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 24.6 bits (51), Expect = 4.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 76 IIHGKSRSDSETPYKTVDFL 95
I +GKS + PY+T DF+
Sbjct: 235 IEYGKSHEKLDLPYRTTDFI 254
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 24.6 bits (51), Expect = 4.1
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 5 PNMPPAVDRNLKPRPSSHNMSQISHISGQPHLQIYQPAKPRSD 47
P++ A D N + SS++ + + PH+ Y P D
Sbjct: 302 PSLETANDGNQETVSSSNSNYSTTRVDNDPHVASYSPQNSNFD 344
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 24.2 bits (50), Expect = 5.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 78 HGKSRSDSETPYKTVDFLKTEAFNITRQDAEASRNLAHLSH 118
H +S + T ++ LKT+ N+T+Q+ N+ L H
Sbjct: 803 HVNMQSQNNTLLESESKLKTDCENLTQQNMTLIDNVQKLMH 843
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 23.8 bits (49), Expect = 7.2
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 9 PAVDRNLKPRPSSHNMSQISHISGQPHLQIYQPAKPRSDVLQYLDLDLQAAKPDAKGSHE 68
P D + P + M Q++ + P++ +Y P + ++ L+ + L+ A P HE
Sbjct: 1303 PIPDSDAASSPITLEMLQVAW-NVSPNIVLYAPKRFQNAPLKQMALNFVIANPFTSVKHE 1361
Query: 69 M 69
+
Sbjct: 1362 V 1362
>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 23.4 bits (48), Expect = 9.6
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 10 AVDRNLKPRPSSHNMSQISHISGQPHLQIYQP 41
A + + +S SQ H PHL IY+P
Sbjct: 38 ATEHLTQTEANSRLASQRVHRPNSPHLTIYEP 69
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.128 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 561,970
Number of Sequences: 5004
Number of extensions: 21628
Number of successful extensions: 35
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 10
length of query: 118
length of database: 2,362,478
effective HSP length: 65
effective length of query: 53
effective length of database: 2,037,218
effective search space: 107972554
effective search space used: 107972554
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 48 (23.4 bits)
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