Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000514-TA|BGIBMGA000514-PA|undefined
(118 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0853 + 6658237-6658531,6658683-6658823,6658969-6659238,665... 29 1.3
08_02_0402 - 16769239-16769504,16769842-16770016,16772762-167730... 28 2.2
06_01_0333 + 2404459-2404857,2404917-2405009,2405428-2405522,240... 28 2.2
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 27 3.0
04_04_1033 - 30269639-30269734,30269838-30270257,30270450-302706... 27 3.0
11_01_0652 - 5278178-5278388,5279118-5279197,5279198-5279271,527... 27 3.9
03_05_1164 - 30863063-30863095,30863308-30864777 27 5.2
02_01_0706 + 5270233-5270326,5270767-5270914,5271018-5271089,527... 27 5.2
08_02_1601 - 28138206-28138597,28138928-28139054,28139150-281399... 26 6.8
03_01_0336 - 2659349-2659486,2659607-2659758,2660257-2660365,266... 26 6.8
02_02_0240 + 8196140-8198248,8198381-8198650 26 6.8
06_02_0016 - 10623796-10625317,10626493-10627541 26 9.0
06_01_0272 + 2016836-2017963 26 9.0
01_03_0029 - 11784446-11784756,11785295-11786576 26 9.0
>01_01_0853 +
6658237-6658531,6658683-6658823,6658969-6659238,
6659324-6659463,6659563-6659709,6660739-6661320
Length = 524
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 77 IHGKSRSDSETPYKTVDFLKTEAFNITRQDAEASRNLA 114
+HG S+ + PY K+E + T+Q AE R LA
Sbjct: 322 LHGCVHSEIQAPYNLRCAFKSEILDATKQAAELLRGLA 359
>08_02_0402 -
16769239-16769504,16769842-16770016,16772762-16773028,
16773156-16773368
Length = 306
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 59 AKPDAKGSHEMLRKRTGIIHGKS 81
A + G+HE R+RTG HGK+
Sbjct: 88 ASKEVNGAHERRRRRTGQRHGKA 110
>06_01_0333 +
2404459-2404857,2404917-2405009,2405428-2405522,
2406146-2406219,2406307-2406395,2406745-2406858
Length = 287
Score = 27.9 bits (59), Expect = 2.2
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 4 MPNMPPAVDRNLKPRPSSHNMSQISHISGQPHLQIYQPAKP 44
+P+ PA L P SS +S + ++ Q H + P P
Sbjct: 24 LPSHRPAAALTLAPALSSRRVSSVCPVASQRHSDYFDPRAP 64
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 8 PPAVDRNLKPRPSSHNMSQISHIS-GQPHLQIYQPAKP 44
PP VDR + P +H M +S ++ G P P KP
Sbjct: 1331 PPGVDRGARVMPGTHGMGMVSGLNRGFPRHS--SPGKP 1366
>04_04_1033 -
30269639-30269734,30269838-30270257,30270450-30270662,
30271071-30271949
Length = 535
Score = 27.5 bits (58), Expect = 3.0
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 66 SHEMLRKRTGIIHGKSRSDSETPYKTVDFLK-------TEAFNITRQDAEASRNLAHLSH 118
SH+ +IH +++ + + ++D K TEA + T AEA+R + HL H
Sbjct: 11 SHDQSLMAGSLIHDSNQAPASSENTSIDLQKFKVHPYSTEALSNTANLAEAARAINHLQH 70
>11_01_0652 -
5278178-5278388,5279118-5279197,5279198-5279271,
5279721-5279787,5279972-5280034,5280288-5281442
Length = 549
Score = 27.1 bits (57), Expect = 3.9
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 54 LDLQAAKPDAKGSHEMLRKRTGIIHGKSRSDSETPYKTVDFLKTEAFNITRQDAEASRNL 113
L +AA S ++ R+R ++ +RS + TP+ ++L Q +AS+ L
Sbjct: 8 LRARAATHLPTSSLDLSRRRRLLLSTAARSAAATPFSVEEYLVDTCGLTGAQALKASKKL 67
Query: 114 AHL 116
+HL
Sbjct: 68 SHL 70
>03_05_1164 - 30863063-30863095,30863308-30864777
Length = 500
Score = 26.6 bits (56), Expect = 5.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 23 NMSQISHISGQPHLQIYQPAKP 44
++S I H+S P+ Q Y P P
Sbjct: 151 SLSMIPHVSAHPYCQAYYPCDP 172
>02_01_0706 +
5270233-5270326,5270767-5270914,5271018-5271089,
5271153-5271263,5271363-5271434,5271533-5271604,
5272126-5272197,5272281-5272346,5272426-5272491,
5272601-5272971,5273203-5273456,5273886-5274157,
5274333-5274474,5275174-5275313,5275381-5275537,
5275797-5275965,5276048-5276088
Length = 772
Score = 26.6 bits (56), Expect = 5.2
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 2 PTMPNMPPAVDRNLKPRPSSHNMSQISHISGQPHLQ 37
P M PPAV NLK +P S +SH S H Q
Sbjct: 294 PPMSPPPPAVKENLKHKPEPLKPS-LSHSSMYNHNQ 328
>08_02_1601 -
28138206-28138597,28138928-28139054,28139150-28139914,
28140714-28140929,28141433-28141903
Length = 656
Score = 26.2 bits (55), Expect = 6.8
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 28 SHISGQPHLQIYQPAKPRSDVLQYLDLDLQAAKPD 62
S IS PH I AKP D L + D ++ D
Sbjct: 386 STISDPPHSSITNLAKPEEDCLMFYDAPFDSSMCD 420
>03_01_0336 -
2659349-2659486,2659607-2659758,2660257-2660365,
2660459-2660563,2660874-2660957,2661072-2662745
Length = 753
Score = 26.2 bits (55), Expect = 6.8
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 3 TMPNMPPAVDR-NLKPRPSSHNMSQISHISGQPHLQ-IYQPAKPRSDVL 49
T+P MPP L P P H I H G P L ++ P P +L
Sbjct: 302 TLPIMPPPFGPLGLPPGPMQHIGPNIPHSPGHPLLPGVFVPPFPGGPLL 350
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 26.2 bits (55), Expect = 6.8
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 27 ISHISGQPHLQIYQPAKPRSDVLQYLDLDLQAAKPDAKGS 66
ISH +G QP+ P Q+ +L AA P A S
Sbjct: 78 ISHNAGNAKFNFLQPSDPYHAYYQHRVSELAAAPPSAAAS 117
>06_02_0016 - 10623796-10625317,10626493-10627541
Length = 856
Score = 25.8 bits (54), Expect = 9.0
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 53 DLDLQAAKPDAKGSHEMLRKRTGIIHGKSRSDSETPYKTVDF---LKTEAFNITRQ 105
D+DL D++ + ++ G + G+ S + P K DF L T A +IT Q
Sbjct: 333 DVDLAGGVEDSETARPPRNEKDGQLEGEKGSKNNEPMKDNDFVLLLATLAASITYQ 388
>06_01_0272 + 2016836-2017963
Length = 375
Score = 25.8 bits (54), Expect = 9.0
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 18 RPSSHNMSQISHISGQPHLQIYQPAKPRSDV-LQYLDL 54
R S+ N ++ HI PH QP+ PR + L Y DL
Sbjct: 64 RSSNFNTQRLDHIYHDPH---SQPSTPRPPMRLHYADL 98
>01_03_0029 - 11784446-11784756,11785295-11786576
Length = 530
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 40 QPAKPRSDVLQYLDLDLQAAKPDAKGS 66
+P R D L++L DL+AA A+GS
Sbjct: 205 RPDLSRDDALRHLRADLRAAVASARGS 231
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.128 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,623,499
Number of Sequences: 37544
Number of extensions: 142754
Number of successful extensions: 260
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 251
Number of HSP's gapped (non-prelim): 14
length of query: 118
length of database: 14,793,348
effective HSP length: 73
effective length of query: 45
effective length of database: 12,052,636
effective search space: 542368620
effective search space used: 542368620
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 54 (25.8 bits)
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