Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000514-TA|BGIBMGA000514-PA|undefined
(118 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3427| Best HMM Match : Homeobox (HMM E-Value=4e-24) 33 0.081
SB_11269| Best HMM Match : Extensin_2 (HMM E-Value=0.14) 29 1.00
SB_58015| Best HMM Match : rve (HMM E-Value=0.00087) 28 1.7
SB_11609| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.7
SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.7
SB_49635| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.0
SB_48611| Best HMM Match : SKI (HMM E-Value=0.00037) 27 3.0
SB_8481| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.0
SB_31402| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_46138| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_3949| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_9137| Best HMM Match : SCP (HMM E-Value=3.6e-18) 26 7.0
SB_16617| Best HMM Match : Vicilin_N (HMM E-Value=5.5) 26 7.0
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.0
SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11) 26 7.0
SB_1629| Best HMM Match : C2 (HMM E-Value=7.3e-17) 26 7.0
SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
SB_44450| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.3
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07) 26 9.3
>SB_3427| Best HMM Match : Homeobox (HMM E-Value=4e-24)
Length = 245
Score = 32.7 bits (71), Expect = 0.081
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 2 PTMPNMPPAVDRNLKPRPSSHNMSQISHISGQPHLQIYQPAKPRSDVLQYLDL 54
P P+ PA D+ KPR S + Q+S + + Y AK R+++ + L++
Sbjct: 66 PQTPDSDPAPDKAAKPRRSFFSADQVSQLERVFAARQYVSAKERAEIAETLNM 118
>SB_11269| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
Length = 817
Score = 29.1 bits (62), Expect = 1.00
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 8 PPAVDRNLKPRPSSHNMSQISHISGQPHLQIYQPAKP-RSDVLQYLDLDLQAAKP 61
PP V PR SSH +S+ S + LQ P P RS Y L L + P
Sbjct: 475 PPEVKPKPPPRMSSHGVSRESSVKYSQTLQREPPQPPQRSVPYHYGTLPLATSSP 529
>SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)
Length = 1333
Score = 28.3 bits (60), Expect = 1.7
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 15 LKPRPSSHNMSQISHISGQPHLQIYQPAKPRSDVLQYLDLDLQAAKPDAKGSHEMLRKRT 74
L R S + ++ S Q HLQ + L+Y+ ++++A+K D RK T
Sbjct: 1216 LPMRASEFTVDSLNSFSSQRHLQPQDITFDSTSALKYIRVNVKASKTDP------FRKGT 1269
Query: 75 GIIHGKSR 82
I GK+R
Sbjct: 1270 FIYIGKAR 1277
>SB_11609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 11 VDRNLKPRPSSHNMSQISHISGQPHLQIYQPAKPRSDVLQYLDLDL 56
V R K P + +S +HI+ P ++ AK +S++ +YL + L
Sbjct: 14 VSRQDKEAPIYYKISDATHIAKIPMKRLLSHAKTKSELTEYLAVKL 59
>SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 28.3 bits (60), Expect = 1.7
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 8 PPAVDRNLKPRPSSHNMSQISHISGQPHLQI-YQPAKPRSDVLQYLDLDLQAAKPDAKGS 66
P + D N KP PS + SQ S + P + P+ + Q + P+ GS
Sbjct: 492 PASSDTNKKPSPSQASFSQPSTLRNSPSSSLRNSPSSSMDQLFQQKQAPMGGTTPNTMGS 551
>SB_49635| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 276
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 62 DAKGSHEMLRKRTGIIHGKSRSDSETPYK 90
D+KG E L K T H + R +ET Y+
Sbjct: 224 DSKGDQEFLHKCTQAKHRRRRRSAETEYR 252
>SB_48611| Best HMM Match : SKI (HMM E-Value=0.00037)
Length = 926
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 11 VDRNLKPRPSSHNMSQISHISGQPHLQIYQPAKPRSDVLQYLDLDL 56
V R K P + +S +HI+ P ++ K +S++ +YL + L
Sbjct: 376 VSRQGKEAPIYYKISDATHIAKIPMKRLLSHVKTKSELTEYLSVKL 421
>SB_8481| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 2 PTMPNMPPAVDRNLKPRPSSHNMSQISHISGQPHLQI 38
PT+P A N P PS + + H+ GQ L++
Sbjct: 88 PTLPQEKTATTGNPTPSPSRNELRFTIHVEGQRVLEV 124
>SB_31402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 27.1 bits (57), Expect = 4.0
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 2 PTMPNMPPAVDRNLKPRPSSHNMSQISHISGQPHLQIYQPAKPRSDVL 49
PT P A N P PS +++ I H+ G+ L+ PA S++L
Sbjct: 51 PTPPQEQSATTGNPTPLPSHNDLRLIIHVEGRRELE--GPAIDFSNIL 96
>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6489
Score = 26.6 bits (56), Expect = 5.3
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 19 PSSHNMSQIS--HISGQPHLQIYQPAKPRSDVLQYLDLDLQAAKPDAKGS 66
P S+N++ S H QP L Y KP S+++ ++D QA DA S
Sbjct: 4311 PISYNVTLRSAHHSRFQPRLA-YVRQKPGSELMSFIDEQNQALPTDAPSS 4359
>SB_46138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1106
Score = 26.6 bits (56), Expect = 5.3
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 16 KPRPSSHNMSQISHISGQPHLQIYQPAKPRSDVLQYLDLDLQAAKPDAKGS-HEMLRKRT 74
KP PS N Q + Y+P +++ +QY QA K K R T
Sbjct: 670 KPEPSQENKVQYKPEPSHANKVQYKPEPSQANKVQYKPEPSQANKVQYKPEPFRQTRFNT 729
Query: 75 GIIH-GKSRSDSETP-YKTVDFLKTEAFNITRQDAE 108
++RS+ P Y D ++T +F I D E
Sbjct: 730 SQNPLRQTRSEEHLPTYCRSDAIRTSSFTIGDSDDE 765
>SB_3949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 425
Score = 26.6 bits (56), Expect = 5.3
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 78 HGKSRS-DSETPYKTVDFLKTEAFNITRQDAE 108
HG S S DS PYK+VD L E +N + D E
Sbjct: 255 HGLSSSNDSYNPYKSVDQLHDE-WNAAKSDDE 285
>SB_9137| Best HMM Match : SCP (HMM E-Value=3.6e-18)
Length = 708
Score = 26.2 bits (55), Expect = 7.0
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 44 PRSDVLQYLDLDLQAAKPDAKGSHEMLRKRTGIIHGKSRSDSETPYKTVDFL-KTEA-FN 101
P +Y + K DAK E ++ T HGK +D+ + + +F TE
Sbjct: 231 PEKIYSKYEKFASELEKNDAKTESERVKDATDFPHGKHAADTPSNHDVTEFNGDTEGDVT 290
Query: 102 ITRQDAEA 109
IT D A
Sbjct: 291 ITNDDENA 298
>SB_16617| Best HMM Match : Vicilin_N (HMM E-Value=5.5)
Length = 547
Score = 26.2 bits (55), Expect = 7.0
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 5 PNMPPAVDRNLKPRPSSHNMSQISHISGQPHLQIYQPAKPR-----SDVLQYLDLDLQAA 59
P+ A R + RP+S + +P Q Q A+PR + ++ D D QAA
Sbjct: 485 PDQQAARKRPARTRPASGQKKTSKAKTSKPQGQDKQAARPRQASRKTKTIKSQDQDKQAA 544
Query: 60 KP 61
KP
Sbjct: 545 KP 546
>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1252
Score = 26.2 bits (55), Expect = 7.0
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 78 HGKSRS-DSETPYKTVDFLKTEAFNITRQDAE 108
HG S S DS PYK+VD L E +N + D E
Sbjct: 967 HGLSSSNDSYKPYKSVDQLHDE-WNTAKSDDE 997
>SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11)
Length = 2297
Score = 26.2 bits (55), Expect = 7.0
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 5 PNMPPAVDRNLKPRPSSHNMSQISHISG--------QPHLQIYQPAKPRSDVLQYLDLDL 56
P P +R +P P+ ++ SG +P Q +PAKP +V Q DLD
Sbjct: 1905 PKPRPRTNRPAQPVPARRQSPRVPEASGGHPQKPEPKPRAQS-KPAKPTQNVNQADDLDT 1963
Query: 57 QAA 59
AA
Sbjct: 1964 SAA 1966
>SB_1629| Best HMM Match : C2 (HMM E-Value=7.3e-17)
Length = 327
Score = 26.2 bits (55), Expect = 7.0
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 17 PRPSSHNMSQISHISGQPHLQIYQPAKPRSDVLQYLDL 54
P P ++ Q S SG Y+ A P+ +LQ DL
Sbjct: 127 PAPRRSSLMQPSTSSGDSSESTYEQATPKKGILQCRDL 164
>SB_46160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1488
Score = 25.8 bits (54), Expect = 9.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 2 PTMPNMPPAVDRNLKPRPSSHNMSQISHISGQP 34
P P+ + +KP+P+S++ SQ S +S P
Sbjct: 1002 PAQPSSGASTSPPVKPKPNSYSPSQRSPLSEPP 1034
>SB_44450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 2 PTMPNMPPAVDRNLKPRPSSHNMSQISHISGQPHLQIYQPAKPRSDVL 49
PT P A N PS +++ I H+ G+ L++ PA S++L
Sbjct: 298 PTQPQEQSATTGNPTLSPSYNDLRLIIHVEGRRELEV--PAIDFSNIL 343
>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
Length = 2128
Score = 25.8 bits (54), Expect = 9.3
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 43 KPRSDVLQYLDLDLQAAKPDAKGSHEMLRKRTGIIHGKSRSDSETPYKTVD 93
K +S VL++ ++L+ + + + + T ++HG R DS Y D
Sbjct: 248 KSKSPVLRHSRVNLKDKQSKFEQLDKTAEQETAVLHGMHRQDSTEMYDIGD 298
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.314 0.128 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,182,898
Number of Sequences: 59808
Number of extensions: 168583
Number of successful extensions: 362
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 30
length of query: 118
length of database: 16,821,457
effective HSP length: 73
effective length of query: 45
effective length of database: 12,455,473
effective search space: 560496285
effective search space used: 560496285
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 54 (25.8 bits)
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