Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000514-TA|BGIBMGA000514-PA|undefined
(118 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29381-2|AAA68750.2| 174|Caenorhabditis elegans Hypothetical pr... 32 0.12
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 28 2.0
Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical pr... 27 4.5
AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like fact... 27 4.5
AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like fact... 27 4.5
Z99281-39|CAJ44244.1| 740|Caenorhabditis elegans Hypothetical p... 26 6.0
AY611485-1|AAT37524.1| 740|Caenorhabditis elegans epidermal gro... 26 6.0
Z82286-4|CAB05310.1| 468|Caenorhabditis elegans Hypothetical pr... 26 7.9
AC006633-5|AAO21429.1| 506|Caenorhabditis elegans Prion-like-(q... 26 7.9
AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans Prion-like-(q... 26 7.9
>U29381-2|AAA68750.2| 174|Caenorhabditis elegans Hypothetical
protein F35D11.4 protein.
Length = 174
Score = 31.9 bits (69), Expect = 0.12
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 28 SHISGQPHLQIYQPAKPRSDVLQYLDLDLQAAKPDAKGSHEMLRKRTGIIHGKSRSDSET 87
S ++G P L + S+VL L L LQ++ KG E+ + RT ++HG++R +
Sbjct: 67 SDVAG-PKLSNFNKFDVPSEVLDALKLSLQSSM-GVKG--EVKKTRTLVLHGQTRIHIDR 122
Query: 88 PYKTVDFLKTEAFNITRQDAEASRNLAH 115
DF++ E + E +AH
Sbjct: 123 VDGLGDFMELEVCLSPEETPEHGEKIAH 150
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 17 PRPSSHNMSQISHISGQPHLQIYQPAKPRSDV 48
P P M+Q +H+ QPH QI+QP R +
Sbjct: 144 PTPGIPQMNQGAHLPPQPH-QIHQPTPLRPQI 174
>Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical
protein F39H11.2 protein.
Length = 505
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 15 LKPRPSSHNMSQISHISGQPHLQIYQP 41
++P+ + H M+Q H + QPH QIY P
Sbjct: 194 VQPQMTRHQMAQ--HHAQQPHPQIYVP 218
>AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like factor
protein.
Length = 454
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 15 LKPRPSSHNMSQISHISGQPHLQIYQP 41
++P+ + H M+Q H + QPH QIY P
Sbjct: 194 VQPQMTRHQMAQ--HHAQQPHPQIYVP 218
>AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like factor
protein.
Length = 505
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 15 LKPRPSSHNMSQISHISGQPHLQIYQP 41
++P+ + H M+Q H + QPH QIY P
Sbjct: 194 VQPQMTRHQMAQ--HHAQQPHPQIYVP 218
>Z99281-39|CAJ44244.1| 740|Caenorhabditis elegans Hypothetical
protein Y57G11C.24h protein.
Length = 740
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 3 TMPNMPPAVDRNLKPRPSSHNMS 25
T PN P ++ R K RP NMS
Sbjct: 492 TAPNTPQSMQRTPKSRPPHRNMS 514
>AY611485-1|AAT37524.1| 740|Caenorhabditis elegans epidermal growth
factor receptorpathway substrate 8 splice variant B
protein.
Length = 740
Score = 26.2 bits (55), Expect = 6.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 3 TMPNMPPAVDRNLKPRPSSHNMS 25
T PN P ++ R K RP NMS
Sbjct: 492 TAPNTPQSMQRTPKSRPPHRNMS 514
>Z82286-4|CAB05310.1| 468|Caenorhabditis elegans Hypothetical
protein W02A2.7 protein.
Length = 468
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 19 PSSHNMSQISH--ISGQPHLQIYQPAKPRSDVLQ 50
P++ +M+ H +SGQP+L + QP + V+Q
Sbjct: 83 PANGSMAPQQHMMVSGQPYLYMAQPQQGAQQVMQ 116
>AC006633-5|AAO21429.1| 506|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
isoform b protein.
Length = 506
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 2 PTMPNMPPAVDRNLKPRPSSHNMSQISHISGQP 34
P M N PPAV + P S MSQ S +P
Sbjct: 335 PRMYNPPPAVSHSQGPSRSVSRMSQDSLFYSRP 367
>AC006633-4|AAK68376.3| 1128|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 34,
isoform a protein.
Length = 1128
Score = 25.8 bits (54), Expect = 7.9
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 2 PTMPNMPPAVDRNLKPRPSSHNMSQISHISGQP 34
P M N PPAV + P S MSQ S +P
Sbjct: 335 PRMYNPPPAVSHSQGPSRSVSRMSQDSLFYSRP 367
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.314 0.128 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,023,501
Number of Sequences: 27539
Number of extensions: 117784
Number of successful extensions: 242
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 10
length of query: 118
length of database: 12,573,161
effective HSP length: 73
effective length of query: 45
effective length of database: 10,562,814
effective search space: 475326630
effective search space used: 475326630
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 54 (25.8 bits)
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