GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000514-TA|BGIBMGA000514-PA|undefined
         (118 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   3.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   3.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   3.8  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   5.0  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 1   MPTMPNMPPAVDRNLK 16
           +PT P +PP + R L+
Sbjct: 103 IPTAPPIPPEIQRALE 118


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 15  LKPRPSSHNMSQISHISGQPHLQIY 39
           ++ +PS    S  SHI  QP ++ Y
Sbjct: 434 IQSQPSPQYPSTSSHILQQPSIRTY 458


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 5   PNMPPAVDRNLKPRPSSHNMSQISHISGQPHLQIYQPAKPRSDVLQYLDLDL-QAAKPDA 63
           P M  +    + PR S  +   +  +  +P +  Y   KP  +  +Y  +++ Q  +P +
Sbjct: 145 PQMYSSGGEEITPRQSHQSYHHMDSVEYKPEIMEY---KPDVEEQRYKQVEISQMTEPSS 201

Query: 64  KGSHEMLRKRTGIIHGKSRSDSET 87
                +L    G  +GK +  S T
Sbjct: 202 STKSYVLE---GPRNGKRKRKSST 222


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 20.6 bits (41), Expect = 5.0
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 3  TMPNMPPAVDRNLKPRPS 20
          TMP   P   +N KP P+
Sbjct: 21 TMPETTPRRKKNKKPLPT 38


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.128    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,370
Number of Sequences: 429
Number of extensions: 1235
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 118
length of database: 140,377
effective HSP length: 51
effective length of query: 67
effective length of database: 118,498
effective search space:  7939366
effective search space used:  7939366
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.6 bits)
S2: 39 (19.8 bits)