Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000514-TA|BGIBMGA000514-PA|undefined
(118 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putativ... 30 0.35
At5g19420.1 68418.m02314 zinc finger protein, putative / regulat... 30 0.47
At1g13940.1 68414.m01637 expressed protein 29 1.1
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 27 2.5
At3g10310.1 68416.m01237 kinesin motor protein-related similar t... 27 2.5
At5g11990.1 68418.m01402 proline-rich family protein contains pr... 27 3.3
At4g14080.1 68417.m02173 glycosyl hydrolase family 17 protein / ... 26 5.8
At3g23770.1 68416.m02988 glycosyl hydrolase family 17 protein si... 26 5.8
At2g02150.1 68415.m00151 pentatricopeptide (PPR) repeat-containi... 26 5.8
At5g44360.1 68418.m05432 FAD-binding domain-containing protein s... 26 7.6
At4g16390.1 68417.m02481 chloroplastic RNA-binding protein P67, ... 26 7.6
At3g52750.1 68416.m05812 chloroplast division protein, putative ... 26 7.6
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 26 7.6
At2g40210.1 68415.m04945 MADS-box family protein contains Pfam p... 26 7.6
At1g22440.1 68414.m02805 alcohol dehydrogenase, putative similar... 26 7.6
>At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putative
(UBP27) similar to GI:11993494; ubiquitin specific
protease 66 - Gallus gallus,PID:g3800764
Length = 494
Score = 30.3 bits (65), Expect = 0.35
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 35 HLQIYQPAKPRSDVLQYLDLDLQAAKPDAKGSHEMLRKRTGIIH-GKSRSDSETPYKTVD 93
+L ++ P+ ++ + +++ + KP+A +H M R T + H G++ S T Y++V
Sbjct: 389 NLSLFTPSSIGVNIEERIEMSSEYQKPEASKNHGMYRLVTVVEHFGRTGSGHYTVYRSVR 448
Query: 94 FLKTE 98
E
Sbjct: 449 VFSQE 453
>At5g19420.1 68418.m02314 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1124
Score = 29.9 bits (64), Expect = 0.47
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 2 PTMPNMPPAVDRNLKPRPSSHNMSQISHISGQPHLQIYQP--AKPRSDV-LQYLDLDLQA 58
P+ N P R P S + ++ G HL+++ P + P++ V + D+ L A
Sbjct: 166 PSEANSPRTYTRRSSPLHSPFSSNESFQKEGSNHLRLHSPYESPPKNGVDKAFSDMSLYA 225
Query: 59 AKPDAKGSHEMLRKRTGIIHGKSRSDSETPYKTVDFLKTEAFNITRQDAEAS 110
P KG T +H S S+T + + + +AF ++ A +S
Sbjct: 226 VPP--KGFFPP-GSATMSVHSLSSGGSDTLHGHMKGMGMDAFRVSLSSAISS 274
>At1g13940.1 68414.m01637 expressed protein
Length = 1005
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 4 MPNMPPAVDRNLKPRPSSHNMSQISHISG--QPHLQIYQPAKPRSDVLQYLDLDLQAAK 60
+P +P D N KP+ SH + H +G + +QPAKP + Q + + + +++
Sbjct: 294 IPVIPLQPDLNGKPKVWSHQPLRTDHYNGTHKSAAPFFQPAKPLDSLSQPMQVLMNSSQ 352
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 2 PTMPNMPPAVDRNLKPRPSSHNMSQISHISGQPHLQ 37
P+ P++PP + P P SH+ S S+ PH Q
Sbjct: 143 PSTPSLPPPTPKKSPPPPPSHHSSSPSN---PPHHQ 175
>At3g10310.1 68416.m01237 kinesin motor protein-related similar to
carboxy-terminal kinesin 2 GB:P79955 [Xenopus laevis]
Length = 897
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 32 GQPHLQIYQPAKPRSDVLQYLDLDLQAAKPDAKGSHEMLRKRTGIIHGKSRSD 84
G P ++++Q PRS + Y + +A K D + S L+ + G SR+D
Sbjct: 737 GDPTMEVHQLKNPRSPLSSYQN---RAVKVDGRTSIPQLQLLQTPVKGASRND 786
>At5g11990.1 68418.m01402 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 181
Score = 27.1 bits (57), Expect = 3.3
Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 3/103 (2%)
Query: 2 PTMPNMPPAVDRNLKPRPSSHNMSQISH-ISGQPHLQIYQPAKPRSDVLQYLDLDLQAAK 60
P P++P + P P H+ +S +S P + + P PR +
Sbjct: 56 PPSPSLPLSSSPP-PPPPHKHSPPPLSQSLSPPPLITVIHPPPPRFYYFESTPPP-PPLS 113
Query: 61 PDAKGSHEMLRKRTGIIHGKSRSDSETPYKTVDFLKTEAFNIT 103
PD KGS + G+S+ + PY F A N T
Sbjct: 114 PDGKGSPPSVPSSPPSPKGQSQGQQQPPYPFPYFYFYTASNAT 156
>At4g14080.1 68417.m02173 glycosyl hydrolase family 17 protein /
anther-specific protein (A6) identical to probable
glucan endo-1,3-beta-glucosidase A6 precursor SP:Q06915
from [Arabidopsis thaliana]
Length = 478
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/40 (27%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 70 LRKRTGIIHGKSRSDSETPYKTVDFLKT-EAFNITRQDAE 108
L + GI +G+ ++ +PY++++F+K+ +A ++ DA+
Sbjct: 38 LASKIGINYGRRGNNLPSPYQSINFIKSIKAGHVKLYDAD 77
>At3g23770.1 68416.m02988 glycosyl hydrolase family 17 protein
similar to A6 anther-specific protein SP:Q06915
[Arabidopsis thaliana]
Length = 476
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 70 LRKRTGIIHGKSRSDSETPYKTVDFLKT-EAFNITRQDAE 108
L R GI +GK ++ PY++++ +KT +A ++ DA+
Sbjct: 33 LASRIGINYGKLGNNLPFPYQSINLIKTIKAGHVKLYDAD 72
>At2g02150.1 68415.m00151 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1141
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 17 PRPSSHNMSQISHISGQPHLQIYQPAKPRSDVLQ 50
P PS H+MS +SH Q H I+Q + + Q
Sbjct: 1042 PSPSKHHMSSLSH---QFHQSIHQSHQHHQSIYQ 1072
>At5g44360.1 68418.m05432 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 532
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 35 HLQIYQPAKPRSDVLQYLDLDL 56
++++Y A PR L Y DLDL
Sbjct: 459 YMRVYVSASPRGAYLNYRDLDL 480
>At4g16390.1 68417.m02481 chloroplastic RNA-binding protein P67,
putative nearly identical to 67kD chloroplastic
RNA-binding protein, P67 [Arabidopsis thaliana]
GI:9755842
Length = 688
Score = 25.8 bits (54), Expect = 7.6
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 17 PRPSSHNMSQISHISGQPHLQIYQPAKPRSDVLQYLDLDLQAAKPDAKGSHEMLRKRTGI 76
P S N+ Q +H+S Q A P+S+ + +D+DL +P A S+ + ++
Sbjct: 30 PHFHSRNLLQATHVS-------VQEAIPQSEKSKLVDVDLPIPEPTASKSYVWVNPKSPR 82
Query: 77 IHGKSRSDSETPYKTV 92
R ++ Y ++
Sbjct: 83 ASQLRRKSYDSRYSSL 98
>At3g52750.1 68416.m05812 chloroplast division protein, putative
strong similarity to plastid division protein FtsZ
[Arabidopsis thaliana] GI:14195704, chloroplast division
protein AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809
Length = 473
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 10 AVDRNLKPRPSSHNMSQISHISGQPHLQIYQPAKPRSDVLQYLDLD 55
++ +L +SH SQ S ++ P + + P K S V DLD
Sbjct: 59 SIRNSLNSHSTSHFQSQDSFLNLHPEISMLNPRKETSSVPITEDLD 104
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 19 PSSHNMSQISHISGQPHLQIYQP 41
P + S + H G P +Q YQP
Sbjct: 130 PQQQSQSMVPHPHGHPSVQTYQP 152
>At2g40210.1 68415.m04945 MADS-box family protein contains Pfam
profile: PF00319 SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 371
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 9 PAVDRNLKPRPSSHNMSQISHISGQPHLQI 38
P N P P S+ + Q S +G PHL++
Sbjct: 232 PQQMENGNPNPKSYRLYQGSSSNGNPHLEM 261
>At1g22440.1 68414.m02805 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
esculentum]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 386
Score = 25.8 bits (54), Expect = 7.6
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 37 QIYQPAKPRSDVLQYLDLDLQAAKPDAKGSHEMLRKRT--GIIHGKSRSDSETPYKTVDF 94
+ ++ +P S L ++ Q A P + GS+++LR RT G + G + + P +
Sbjct: 287 EAFKSTRPGSGKTIVLGME-QKALPISLGSYDLLRGRTVCGTLFGGLKPKLDIPILVDRY 345
Query: 95 LKTE 98
LK E
Sbjct: 346 LKKE 349
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.128 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,102
Number of Sequences: 28952
Number of extensions: 113151
Number of successful extensions: 273
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 267
Number of HSP's gapped (non-prelim): 15
length of query: 118
length of database: 12,070,560
effective HSP length: 72
effective length of query: 46
effective length of database: 9,986,016
effective search space: 459356736
effective search space used: 459356736
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 54 (25.8 bits)
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