Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000513-TA|BGIBMGA000513-PA|IPR001849|Pleckstrin-like
         (164 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10180.1 68416.m01219 kinesin motor protein-related similar t...    30   0.89 
At4g23040.1 68417.m03322 UBX domain-containing protein similar t...    29   1.5  
At5g57370.1 68418.m07168 expressed protein low similarity to nuc...    28   2.7  
At2g22270.1 68415.m02644 expressed protein                             28   3.6  
At2g31020.1 68415.m03782 oxysterol-binding family protein simila...    27   4.7  
At3g26640.1 68416.m03329 transducin family protein / WD-40 repea...    27   6.2  
At1g04150.1 68414.m00405 C2 domain-containing protein contains I...    27   6.2  
At1g80220.1 68414.m09388 hypothetical protein                          27   8.3  

>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
           centromere protein E GB:4502781 [Homo sapiens]
          Length = 1348

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 1   MERSGNGTLDPKIRG-SVFTIQTQTRTYHLEAECEAEMEKWVDVICRVCGLRSTDDDRPE 59
           +ERS N +L  + +   V   + +T    LE E  AE  +  + +CR  GL S   D  E
Sbjct: 891 VERSANQSLQEEFKQLEVLAFEMETTIASLEEELAAERGEKEEALCRNDGLGSEITDLTE 950

Query: 60  AVASYQNNTRAASND 74
            +           ND
Sbjct: 951 KLEHSNTKLEHLQND 965


>At4g23040.1 68417.m03322 UBX domain-containing protein similar to
           Ara4-interacting protein [Arabidopsis thaliana]
           GI:13160609; contains Pfam profile PF00789: UBX domain
          Length = 525

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 80  SETTGPYIPISECITGVRDQDDQRHGTGVGNHRSPLGRISENKTNPKYLSQPQIRITAAE 139
           ++  GP    +  I  V D D+Q   TG   H  P+G    N  +   + +  IR  A E
Sbjct: 132 AQAHGPAAQEAVIIDEVSDDDNQSAPTGQSRHAVPVGSAENNMQHYNDIEEQIIR-AAIE 190

Query: 140 LSENESNPSEDDCKSL 155
            S+ E+   +D  KS+
Sbjct: 191 ASKMET--GDDVTKSV 204


>At5g57370.1 68418.m07168 expressed protein low similarity to
           nucleic acid binding protein [Homo sapiens] GI:431953
          Length = 219

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 51  RSTDDDRPEAVASYQNNTRAASNDHYHRASETTGP--YIPISECITGVRDQDDQRH 104
           R  D +R          +R+ + DH+ RA     P  Y   S  I   RD+D QRH
Sbjct: 36  RERDRERDRDRGLRNKKSRSRTPDHHARARHVRSPERYRSRSRSIDRDRDRDRQRH 91


>At2g22270.1 68415.m02644 expressed protein
          Length = 328

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 3/82 (3%)

Query: 75  HYHRASETTGPYIPISECITGVRDQDDQRHGTGVGNHRSPLGRIS---ENKTNPKYLSQP 131
           HYH+   +   +       T +  +DD  H T +  H+    +IS   E    PK  +  
Sbjct: 97  HYHQDQLSQISFSGEENATTPMNGKDDPNHQTRIHYHQDQRSQISFSGEENVTPKKPTTL 156

Query: 132 QIRITAAELSENESNPSEDDCK 153
                  ELS      ++  CK
Sbjct: 157 NEAAKQKELSRTVETQADSKCK 178


>At2g31020.1 68415.m03782 oxysterol-binding family protein similar
           to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
           contains Pfam profiles PF00169: PH domain, PF01237:
           Oxysterol-binding protein
          Length = 760

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 18  FTIQTQTRTYHLEAECEAEMEKWVDVI 44
           F+I T T+  HL AE   + E W++ +
Sbjct: 172 FSIFTGTKRLHLRAETREDREAWIEAL 198


>At3g26640.1 68416.m03329 transducin family protein / WD-40 repeat
           family protein contains 3 WD-40 repeats (PF00400);
           similar to ATAN11 (GI:2290528) [Arabidopsis thaliana]
           (Genes Dev. 11 (11), 1422-1434 (1997)); contains Pfam
           profile: PF00400 WD domain, G-beta repeat (3 copies)
          Length = 346

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 96  VRDQDDQRHGTGV---GNHRSPLGRISENKTNPKYLS 129
           V D  D+ H T +   G   +PL R+S NK +P+Y++
Sbjct: 203 VFDLRDKEHSTIIYESGEPSTPLVRLSWNKQDPRYMA 239


>At1g04150.1 68414.m00405 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1012

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 108 VGNHRSPLGRISENKTNPKY-----LSQPQIRITAAELSENESNPSE 149
           +GN+R    ++S N +NP++      S+ +I+ +  EL   E N  E
Sbjct: 303 LGNYRGVTKKVSSNSSNPEWNQVFVFSKERIQSSVVELFVKEGNKDE 349


>At1g80220.1 68414.m09388 hypothetical protein
          Length = 255

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 12 KIRGSVFTIQTQTRTYHLEA-ECEAEMEKWVDVICRVC 48
          KIR S + +++ TRT  L+A E   +   W DV C +C
Sbjct: 14 KIRVSPYPLRS-TRTNKLKAIESPIDESNWEDVRCMIC 50


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.311    0.127    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,273,537
Number of Sequences: 28952
Number of extensions: 171650
Number of successful extensions: 325
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 9
length of query: 164
length of database: 12,070,560
effective HSP length: 76
effective length of query: 88
effective length of database: 9,870,208
effective search space: 868578304
effective search space used: 868578304
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 56 (26.6 bits)