GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000513-TA|BGIBMGA000513-PA|IPR001849|Pleckstrin-like
         (164 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   2.2  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   3.0  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   5.2  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    21   5.2  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   6.9  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 2/20 (10%)

Query: 62  ASYQNNTRAASN--DHYHRA 79
           A  QNN  AA+N  +H+H A
Sbjct: 307 AQQQNNNNAATNNQNHHHHA 326


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 128 LSQPQIRITAAELSENESNPSEDDCKSLG 156
           L    I+ T + +   ESNPSE   + LG
Sbjct: 277 LRAADIQPTLSSIRHPESNPSERVMRELG 305


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
          protein.
          Length = 343

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/27 (29%), Positives = 17/27 (62%)

Query: 59 EAVASYQNNTRAASNDHYHRASETTGP 85
          EA A+Y +++ + S+  +  +S +T P
Sbjct: 30 EAPAAYSSSSPSGSSPQHSSSSASTSP 56


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
          protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/27 (29%), Positives = 17/27 (62%)

Query: 59 EAVASYQNNTRAASNDHYHRASETTGP 85
          EA A+Y +++ + S+  +  +S +T P
Sbjct: 30 EAPAAYSSSSPSGSSPQHSSSSASTSP 56


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 133 IRITAAELSENESNPSEDDCKSLGA 157
           I  T+ +L EN+ +  +DD  +L A
Sbjct: 104 INETSLQLDENKLDKKDDDSPALRA 128


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.127    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,688
Number of Sequences: 317
Number of extensions: 1708
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 164
length of database: 114,650
effective HSP length: 52
effective length of query: 112
effective length of database: 98,166
effective search space: 10994592
effective search space used: 10994592
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.9 bits)
S2: 40 (20.2 bits)