Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000513-TA|BGIBMGA000513-PA|IPR001849|Pleckstrin-like
(164 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc... 29 0.46
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 27 1.4
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 27 1.4
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 27 1.8
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p... 27 1.8
SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar... 25 4.3
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 25 7.4
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 24 9.8
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 24 9.8
>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 539
Score = 28.7 bits (61), Expect = 0.46
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 26 TYHLEA-ECEAEMEKWVDVICRVCGLRSTDDDRPEAVASYQNNTRAASNDHYHRASETTG 84
+YH A + + + W I R CG+ D++ + T + + Y+ S T G
Sbjct: 288 SYHSFAIDNKGRVYAWGLNITRQCGIEVEDEEEGAVITK---PTLVDALEGYNVKSITGG 344
Query: 85 PYIPISECITG--VRDQDDQRHGTGVGNHRSPLGRISENKTNPKYLSQPQI 133
+ ++ G + D RH G+ ++ P + + K N YLS P I
Sbjct: 345 EHHTLALLEDGRVLAWGRDDRHQLGIPDNALPETVVKDEKGNNYYLSTPTI 395
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 27.1 bits (57), Expect = 1.4
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 88 PISECITGVRDQDD-QRHGTGVGNHRSPLGRISENKTNPKYLSQPQIRITAAELSENESN 146
P CI D D R G R P ++S+ N K + T LS +
Sbjct: 307 PCQRCIKAKTDCIDLPRKKRPTGVRRGPYKKLSDTSNNTKSTTASSGHSTQDSLSSKMLD 366
Query: 147 PSEDDCKSLGASQ 159
PS D+ ++ + Q
Sbjct: 367 PSSDNQFAMSSRQ 379
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 27.1 bits (57), Expect = 1.4
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 61 VASYQNNTRAASNDHYHRASETTGPYIPISECITGV------RDQDDQRHGTGVGNHRSP 114
+AS T A+S+ + T P P+S + G+ +D+D V N+R
Sbjct: 401 LASSTKPTSASSSTKAPLTKQQTNPSTPLSSIMAGLKGREKEKDKDSGISSENVSNNREE 460
Query: 115 LGRISENKTNPKYLSQPQIRITAAELSENESNPSEDDCKS 154
L + ++ + +I AE + S+P+ +D K+
Sbjct: 461 LPSFRKRSSSSR--QSEEIASLQAENAVFSSDPASNDEKT 498
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 114 PLGRISENKTNPKYLSQPQIRITAAELSENESNPSE 149
P G SEN++ P + +R A+EL++ E+ P E
Sbjct: 60 PSGTTSENESLPLNRAPRSLREVASELAQEETLPVE 95
>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 612
Score = 26.6 bits (56), Expect = 1.8
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 9 LDPKIRGSVFTIQTQT---RTYHLEAECEAEMEKWVDVICRVCGLRSTDDDRPEAVASYQ 65
L PKI S I+ + R Y LE + +W D+ R+ G+ TD D E + Q
Sbjct: 324 LTPKIDLSKCIIENRDEMLRRYQLETVYRKTLLEWEDLYKRLTGVTLTDKDIGELLTDGQ 383
>SPAC2F7.05c |||translation initiation factor eIF5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 4.3
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 45 CRVCGLRSTDDDRPEAVASYQNNTRAASNDHYHRASETTGPYIPISECITGVRDQDDQR 103
C+ CG R D R + N A H H+ P++E G D+ +R
Sbjct: 123 CKACGYRGVIDGRHKLTGVIVKNPPAKKKSHKHKRDS------PVAEEEDGAEDELTRR 175
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 24.6 bits (51), Expect = 7.4
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 100 DDQRHGTGVGNHRSPLGRISENKTNPKYLSQPQIRITAAELSENESNPS 148
DD R + + H +P ++ ++ +Y S P R + +++ +PS
Sbjct: 318 DDSRFHSKIHTHSTPPSQMYSAASHFRYRSDPSTRHVSNSTNKSSLHPS 366
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 24.2 bits (50), Expect = 9.8
Identities = 13/61 (21%), Positives = 21/61 (34%)
Query: 73 NDHYHRASETTGPYIPISECITGVRDQDDQRHGTGVGNHRSPLGRISENKTNPKYLSQPQ 132
N H T P+ P S + V H+ + S+ + + LS PQ
Sbjct: 339 NGHMRSLHNATSPFRPFSPSYRSSDTHSPRTRSPNVQTHKKTSSQPSDLSSFAQLLSPPQ 398
Query: 133 I 133
+
Sbjct: 399 V 399
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 24.2 bits (50), Expect = 9.8
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 51 RSTDD-DRPEAVASYQNNTRAASNDHYHRASETTG 84
+ST+ PE S ++ AS+ HRAS TTG
Sbjct: 204 KSTESTSSPELSHSLDSSKSIASDMPIHRASHTTG 238
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.127 0.372
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 806,688
Number of Sequences: 5004
Number of extensions: 32057
Number of successful extensions: 82
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 9
length of query: 164
length of database: 2,362,478
effective HSP length: 68
effective length of query: 96
effective length of database: 2,022,206
effective search space: 194131776
effective search space used: 194131776
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 50 (24.2 bits)
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