GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000513-TA|BGIBMGA000513-PA|IPR001849|Pleckstrin-like
         (164 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530     31   0.35 
12_02_1091 - 26001129-26001181,26001292-26001325,26001339-260014...    31   0.46 
04_03_0640 + 18257612-18257787,18257831-18257906,18259105-18260556     31   0.60 
03_04_0095 + 17266595-17266741,17267235-17267807                       30   0.80 
02_05_1048 + 33748260-33748433,33748886-33748978,33750174-337503...    30   0.80 
12_01_0119 + 905916-907277,907737-907774,908269-908492,909411-90...    30   1.1  
04_04_0145 + 23103397-23104308                                         27   9.8  

>02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530
          Length = 519

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 117 RISENKTNPKYLSQPQIRITAAELSENESNPSEDDCKSLGASQSNMRK 164
           RI   +TN +   + QI +   +L E E+N S++D K L    S M +
Sbjct: 383 RIDRPETNEEKDLKEQINLLRVDLKETEANISDEDKKGLSEKLSQMER 430


>12_02_1091 -
           26001129-26001181,26001292-26001325,26001339-26001437,
           26002327-26002369,26002389-26002494,26002776-26002818,
           26003526-26003579,26003831-26003911,26003997-26004119,
           26004197-26004846,26004928-26005554,26005633-26005870,
           26006082-26006258,26006373-26006723,26006824-26007111,
           26008340-26008462,26008551-26009007,26009115-26009263,
           26009466-26009489
          Length = 1239

 Score = 31.1 bits (67), Expect = 0.46
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 90  SECITGVRDQDDQRHGTGVGNHRSPLGRISENKTNPKYLSQP 131
           S C+  V ++ D R G+ +     PLGR+ E    P +  +P
Sbjct: 494 SACVEYVTEKTDGRSGSSITLFSGPLGRVQERIRTPVHAPEP 535


>04_03_0640 + 18257612-18257787,18257831-18257906,18259105-18260556
          Length = 567

 Score = 30.7 bits (66), Expect = 0.60
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 1   MERSGNGTLDPKIRGSVFTIQTQTRTYHLEAECEAEMEKWVDVICRVCGLRSTDD 55
           +ER G   L PK++GS    +T  R      +C   +E W D++ R   +R+  D
Sbjct: 518 LERIGRAIL-PKLKGSPLAAKTLGRLL----KCNRSIEHWEDILKRAVAIRTRGD 567


>03_04_0095 + 17266595-17266741,17267235-17267807
          Length = 239

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 8/76 (10%)

Query: 76  YHRASETTGPYIPISECITGVRDQDDQRHGTGVGNHRSPLGRISENKTNPKYLSQPQIRI 135
           ++R SE   P    + C  GV D+D  R G G  +H+  + +   + T  K     Q R 
Sbjct: 30  FNRKSERVDP----TGCFGGVNDKDSTRSGRGNTHHKEEIEKDIASDTEGKL----QQRD 81

Query: 136 TAAELSENESNPSEDD 151
           T      N++N S ++
Sbjct: 82  TTGLQQSNQTNQSNEE 97


>02_05_1048 +
           33748260-33748433,33748886-33748978,33750174-33750371,
           33750502-33750675,33750769-33750875,33751233-33751564,
           33751654-33752147
          Length = 523

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 11  PKIRGSVFTIQTQTRTYH----LEAECEAEMEKWVDVICRV-CGLRSTDDDRPEAVASYQ 65
           PK  GS+F    ++++YH    LE E E+ + K++D +      L S  D   + +A+ Q
Sbjct: 291 PKTEGSIFENPNKSKSYHGFSYLEGEHESHLSKYIDHVSPCDFPLMSKKDGMKDDIANQQ 350

Query: 66  NN 67
            +
Sbjct: 351 QS 352


>12_01_0119 +
          905916-907277,907737-907774,908269-908492,
          909411-909637,909733-909980,910275-910557,910707-911135
          Length = 936

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 24 TRTYHLEAECEAEMEKWVDVICRVCGLRS-TDDDRPEAVASYQNNTR 69
          TR + L+A+     E     ICR C +    DD+R E  ++Y+ NTR
Sbjct: 26 TRPFTLDAQVTDTFEALA--ICRDCKMTVLNDDERDEITSTYRQNTR 70


>04_04_0145 + 23103397-23104308
          Length = 303

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 130 QPQIRITAAELSENESNPSEDDCKSLG 156
           +P  R  AAEL E E+N  ED+C + G
Sbjct: 155 KPVARSLAAEL-EQEANAEEDECAAAG 180


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.311    0.127    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,251,411
Number of Sequences: 37544
Number of extensions: 208411
Number of successful extensions: 386
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 384
Number of HSP's gapped (non-prelim): 7
length of query: 164
length of database: 14,793,348
effective HSP length: 77
effective length of query: 87
effective length of database: 11,902,460
effective search space: 1035514020
effective search space used: 1035514020
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 56 (26.6 bits)