GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000513-TA|BGIBMGA000513-PA|IPR001849|Pleckstrin-like
         (164 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.66 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   1.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   4.7  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   8.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 0.66
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 56   DRPEAVASYQNNTRAASNDHYHRASET-TGPYIPISECITGVRDQDDQRHGT 106
            +RPE V +   +   +        S+  T P  P+S    G RD+D  R  T
Sbjct: 1367 ERPERVPTVDLSPSPSDRGRNDDGSDRLTSPPTPLSISRAGSRDEDSTRDST 1418


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 46 RVCGLRSTDDDRPEAVASYQNNTRAASNDHYHRASETT 83
          R+ GL   D++    +     ++ + S DHY R S +T
Sbjct: 16 RIQGLYLLDNNDSSGIPHSAESSASNSPDHYERFSPST 53


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 51  RSTDDDRPEAVASYQNNTRAASNDHYHRAS 80
           R +  +  EA+  +Q N  +  ND Y  AS
Sbjct: 409 RMSTGEMKEAITQWQGNPISPLNDWYSLAS 438


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 69   RAASNDHYHRASETTGPYIPISE 91
            RA S+  YH  S T+    P+SE
Sbjct: 1812 RAVSDFIYHGTSSTSSDISPMSE 1834


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 69   RAASNDHYHRASETTGPYIPISE 91
            RA S+  YH  S T+    P+SE
Sbjct: 1808 RAVSDFIYHGTSSTSSDISPMSE 1830


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 95  GVRDQDDQRHGTGVGN 110
           G+  Q  Q+HG GV N
Sbjct: 193 GILSQHPQQHGLGVQN 208


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
          protein.
          Length = 208

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 72 SNDHYHRASETTGPYIPI 89
          S DH+H+   T G   PI
Sbjct: 4  SRDHWHKRRATGGKRKPI 21


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.127    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,130
Number of Sequences: 429
Number of extensions: 2221
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 164
length of database: 140,377
effective HSP length: 53
effective length of query: 111
effective length of database: 117,640
effective search space: 13058040
effective search space used: 13058040
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)
S2: 41 (20.6 bits)