Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000512-TA|BGIBMGA000512-PA|IPR000195|RabGAP/TBC
         (613 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    25   1.2  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    25   1.2  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    25   1.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   2.7  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    23   4.7  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   8.1  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   8.1  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    23   8.1  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
          transcription factor Labialprotein.
          Length = 353

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 38 PEFEEYHKTDRYGFIHDERLPQKTAPQKI 66
          P +  YH  D YG+   E  P   +PQ++
Sbjct: 37 PHYSNYHYEDPYGYTGSEETP--PSPQEV 63


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
          protein.
          Length = 210

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 38 PEFEEYHKTDRYGFIHDERLPQKTAPQKI 66
          P +  YH  D YG+   E  P   +PQ++
Sbjct: 37 PHYSNYHYEDPYGYTGSEETP--PSPQEV 63


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
          protein.
          Length = 253

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)

Query: 38 PEFEEYHKTDRYGFIHDERLPQKTAPQKI 66
          P +  YH  D YG+   E  P   +PQ++
Sbjct: 37 PHYSNYHYEDPYGYTGSEETP--PSPQEV 63


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 504 HSTPRATPHPPSASPMSD 521
           +STPR+TP     SP SD
Sbjct: 838 NSTPRSTPDKREKSPTSD 855



 Score = 22.6 bits (46), Expect = 8.1
 Identities = 11/27 (40%), Positives = 13/27 (48%)

Query: 354 LDYPGLPPPNELPKRPLGVFVEPDKKS 380
           L  PG PP  E    PL + V   K+S
Sbjct: 226 LSKPGTPPSGEPGNGPLDLSVSSRKRS 252


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 23.4 bits (48), Expect = 4.7
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 169 FNVLCAYSLYNSEVGYCQ----GMSGLAGVLLMYMDEEDAFWALAVLL 212
           F ++ + S+Y+S VGY Q       GL  + L  + E   F  L VL+
Sbjct: 135 FQLVLSISVYSSSVGYTQYVRIAAKGLPTLKLFALHEFYGFCYLWVLI 182


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 335 DDIVIYQLEKSMEELKRAKLDYPGLPPPNELPKRPLGVFVEPDKKSKI 382
           DD+ I + E S E  K + +      PP+ +     G   E D  S +
Sbjct: 108 DDVFIRKFETSFESGKPSGVISTNTSPPSPILSNRFGENEEADAASNV 155


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 499 APSTSHSTPRATPHPPSASPMS 520
           A S S+ +P  +P P S  P+S
Sbjct: 210 ASSASNYSPSQSPEPESVRPLS 231


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 548 YKTYTDDHLKPISLGFYTSNGTNNVPSDNRIRIQVPSEDLLTPVVDSGRI 597
           YKT        ISL +      N++ S N + +   +E++   + + GR+
Sbjct: 23  YKTIKQHIYSLISLSYLPGPPVNDIISGNILPLYTSAENIFKQLREWGRL 72


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,796
Number of Sequences: 317
Number of extensions: 6963
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 9
length of query: 613
length of database: 114,650
effective HSP length: 61
effective length of query: 552
effective length of database: 95,313
effective search space: 52612776
effective search space used: 52612776
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)