Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000512-TA|BGIBMGA000512-PA|IPR000195|RabGAP/TBC
(613 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 121 1e-27
SB_22474| Best HMM Match : No HMM Matches (HMM E-Value=.) 116 6e-26
SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28) 107 3e-23
SB_10583| Best HMM Match : TBC (HMM E-Value=6.89999e-42) 103 6e-22
SB_4828| Best HMM Match : Peptidase_C48 (HMM E-Value=3e-06) 94 3e-19
SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 2e-18
SB_48859| Best HMM Match : TBC (HMM E-Value=7.1e-12) 91 2e-18
SB_58221| Best HMM Match : TBC (HMM E-Value=2.9e-08) 84 4e-16
SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.) 82 1e-15
SB_32178| Best HMM Match : TBC (HMM E-Value=3.2e-06) 78 2e-14
SB_51958| Best HMM Match : TBC (HMM E-Value=0.00039) 63 7e-10
SB_48678| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 2e-09
SB_17043| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 3e-09
SB_36105| Best HMM Match : TBC (HMM E-Value=1.9e-09) 61 3e-09
SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 3e-08
SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15) 52 2e-06
SB_4827| Best HMM Match : RCSD (HMM E-Value=1.7) 50 5e-06
SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11) 49 1e-05
SB_10197| Best HMM Match : Rho_N (HMM E-Value=1.8) 44 4e-04
SB_3397| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.003
SB_7605| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.006
SB_49879| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.018
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.024
SB_42698| Best HMM Match : SH3_1 (HMM E-Value=5.2e-16) 37 0.055
SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18) 35 0.17
SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13) 35 0.17
SB_42263| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.22
SB_19355| Best HMM Match : MFS_1 (HMM E-Value=1.8e-22) 34 0.39
SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3) 33 0.51
SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19) 33 0.89
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53) 32 1.6
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 32 1.6
SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.7
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.7
SB_49263| Best HMM Match : Surp (HMM E-Value=1e-28) 31 2.7
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 31 3.6
SB_28420| Best HMM Match : DDE (HMM E-Value=0.00017) 29 8.3
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 29 8.3
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 121 bits (292), Expect = 1e-27
Identities = 79/271 (29%), Positives = 137/271 (50%), Gaps = 18/271 (6%)
Query: 76 WLKMLEEWGTSETK-QKLHRRIYKGIPNSLRIGVWSKLLDVNRMRSDNPGKYREMLKLAK 134
W ++L +W T+ ++L + + KGIP LR VW + + S+N L
Sbjct: 40 WSELLSKWKDVSTRPRQLVQLVRKGIPEPLRGQVWQMMAGL----SENDELVDSYKHLFT 95
Query: 135 LWSTDVRQIDSDVNRQFREHQFYRERYSEKQCSLFNVLCAYSLYNSEVGYCQGMSGLAGV 194
S + I D++R F H ++++ E Q +L+ + AYS+Y+ EVGYCQG+S V
Sbjct: 96 KESPTEQVIVWDIHRTFPAHDYFKDSGGEGQEALYKISKAYSVYDEEVGYCQGLSFFIAV 155
Query: 195 LLMYMDEEDAFWALAVLLSDKKYAMHGLYIEGFP-------KLTRFLEHHD---KILTKF 244
LL++M EE AF L ++S Y + ++ F +L R +E ++ I
Sbjct: 156 LLLHMPEEQAFAVLVKIMS--AYGLREVFRNDFQLLHLKFYQLERMIEANNITTVIFQDS 213
Query: 245 MPKLKRHFDKFGLDAILYSLKWFFVCFVERVPFSLCLRVWDIYLLDGERVITAMAYTILK 304
MP L HF ++A +Y+ +WF F R P + + D+ L +G VI +A +LK
Sbjct: 214 MPDLFSHFQHNNVEAHMYASQWFLTMFTARFPLPMVYSIMDLILCEGTHVIFQVALALLK 273
Query: 305 LHKKTIMKLNDMDLIVNYIQVKLHKDFGYED 335
+K ++++ D + I+ + +V + K + E+
Sbjct: 274 DARKDLLQM-DFEGILKFFRVSMPKKYMEEE 303
>SB_22474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 116 bits (279), Expect = 6e-26
Identities = 73/243 (30%), Positives = 123/243 (50%), Gaps = 14/243 (5%)
Query: 91 KLHRRIYKGIPNSLRIGVWSKLLD--VNRMRS-DNPGKYREML-KLAK--LWSTDVRQID 144
+L + GIPN R +W + ++ V +S P Y +L +A +S +QI+
Sbjct: 337 ELKSMVRGGIPNEYRSQIWRQCINHFVRGTKSMAGPNYYAHLLDSIASNIKFSPATKQIE 396
Query: 145 SDVNRQFREHQFYRERYSEKQCSLFNVLCAYSLYNSEVGYCQGMSGLAGVLLMYMDEEDA 204
D+ R + Y + + L NVL AYS +N EVGYCQG++ L + ++ + EE+A
Sbjct: 397 LDLLRTLPNNVHYNKPDANGIGMLRNVLMAYSWHNPEVGYCQGLNRLVAIAMLILKEEEA 456
Query: 205 FWALAVLLSD---KKYAMHGLYIEGFPKLTRFLEHHDKILTKFMPKLKRHFDKFGLDAIL 261
FW L ++ K Y L + R L D ++ K +P+L HF+ +D L
Sbjct: 457 FWCLVAIVEHIMPKDYFSRTLLAAQADQ--RVLR--DLLMEK-LPRLYTHFENVRVDLSL 511
Query: 262 YSLKWFFVCFVERVPFSLCLRVWDIYLLDGERVITAMAYTILKLHKKTIMKLNDMDLIVN 321
+ WF F++ P LRVWD +L +G +V+ A + K++++ ++K+ D I N
Sbjct: 512 ITFNWFLTVFIDSFPIQTILRVWDTFLYEGNKVLFRYALAVFKMNEEELLKIEDHAGIFN 571
Query: 322 YIQ 324
Y++
Sbjct: 572 YMR 574
>SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28)
Length = 998
Score = 107 bits (257), Expect = 3e-23
Identities = 79/292 (27%), Positives = 131/292 (44%), Gaps = 15/292 (5%)
Query: 75 KWLKMLEE-WGTSETKQKLHRRIYKGIPNSLRIGVWSKLLDVNRMRSD-------NPGKY 126
KW ++L W L + G+P R +W L +RS G Y
Sbjct: 553 KWDQLLSRPWDVQVEMCVLRDAVKAGVPKDKRGEIWEFLAKQYSVRSPASKDAFWKAGSY 612
Query: 127 REMLKLAKLWSTDVRQIDSDVNRQFREHQFYRERYSEKQCSLFNVLCAYSLYNSEVGYCQ 186
EM + I D+ R F H ++ ++ Q SLFN+L AYS+ +++VGYCQ
Sbjct: 613 EEMRDGS---CNHQHSIFIDLGRTFPRHPYFTSQFGPGQLSLFNLLKAYSVLDTDVGYCQ 669
Query: 187 GMSGLAGVLLMYMDEEDAFWALAVLLSDKKYAMHGLYIEGFPKLTRFLEHHDKILTKFMP 246
G+S +AG+LLM+M+E AF + LL + LY +L ++L +
Sbjct: 670 GLSFVAGILLMHMEEAKAFDVMRHLLF--ALDLRKLYKSDMTELQIQFYVLSRLLHDYHT 727
Query: 247 KLKRHFDKFGLDAILYSLKWFFVCFVERVPFSLCLRVWDIYLLDGERVITAMAYTILKLH 306
L ++ + LY+ WF F + P +RV D+ L G V + +L
Sbjct: 728 PLYEFLEELDITPTLYAAAWFLTLFASQFPVGFVVRVMDMIFLQGITVCFKVMLLLLSRC 787
Query: 307 KKTIMKLNDMDLIVNYIQVKLHK-DFGYEDDIVIYQLEKSM-EELKRAKLDY 356
K+ IM+ + + V+YI+ + F + D +V L+ + +EL+ ++Y
Sbjct: 788 KEGIMECDGFECAVDYIKTHVPPYAFAHMDSLVAQVLDMDICKELESYVIEY 839
>SB_10583| Best HMM Match : TBC (HMM E-Value=6.89999e-42)
Length = 297
Score = 103 bits (246), Expect = 6e-22
Identities = 72/307 (23%), Positives = 142/307 (46%), Gaps = 40/307 (13%)
Query: 37 DPEFEE-YHKTDRYGFIHDERLPQKTAPQ----KINIELEREKKWLKMLEEWGTSETKQK 91
D FE + D YGF + +T + I I R +W +L+ + +K
Sbjct: 12 DQLFERRWSPVDEYGFHRPDDFDYETYSEFMSSYIRILAHRATRWGSVLKGSSKVKKSRK 71
Query: 92 LHRRIYKGIPNSLRIGVWSKLLDVNRMRSDNPGKYREMLK-------------LAKLWST 138
+ R + KG+P+S R VW + + PG Y+ +L+ + T
Sbjct: 72 IKRFVRKGVPSSHRAQVWMDISGARKRMKKLPGYYQSLLESELDDIVRNSILTVVPAADT 131
Query: 139 DVRQIDSDVNRQFREHQFYRERYSEKQCSLFNVLCAYSLYNSEVGYCQGMSGLAGVLLMY 198
+ + +D++R F E+ ++ + L N+L AY+++N ++GYCQG++ +AG+LL+
Sbjct: 132 FMFVVFTDIDRTFPENIYFGSSSDSLKQKLKNILVAYAVHNPKIGYCQGLNYIAGLLLLI 191
Query: 199 M-DEEDAFWALAVLLSDKKYAMHGLYIEGFPKLTRFLEHHDKILTKFMPKLKRHFDKFGL 257
+ EE AFW L ++ + + + G L+ ++L++ +
Sbjct: 192 IKSEEPAFWLLEAMMMKRLPDYYAKDMMG-------LQVEQEVLSELVN----------- 233
Query: 258 DAILYSLKWFFVCFVERVPFSLCLRVWDIYLLDGERVITAMAYTILKLHKKTIMKLNDMD 317
++S KWF +++ +P LR+WD +G +++ +A T+L LH+ ++ D
Sbjct: 234 ---IFSTKWFICLYIDVLPVETVLRIWDSLFYEGSKILLRVAITLLALHQDKLLAAKDFP 290
Query: 318 LIVNYIQ 324
+ N ++
Sbjct: 291 QLCNVMK 297
>SB_4828| Best HMM Match : Peptidase_C48 (HMM E-Value=3e-06)
Length = 512
Score = 93.9 bits (223), Expect = 3e-19
Identities = 43/94 (45%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Query: 66 INIELEREKKWLKMLEEWGTSETKQKLHRRIYKGIPNSLRIGVWSKLLDVNRMRSDNPGK 125
I +E R KWLKM++ W +KL +R+YKGIPNS+R +W KLL V+++ +
Sbjct: 417 IALERSRISKWLKMIKNWDKYVRSEKLRKRVYKGIPNSMRGEIWKKLLGVDKI-PNRTTT 475
Query: 126 YREMLKLAKLWSTDVRQIDSDVNRQFREHQFYRE 159
Y M ++A+L S D+RQID DVNR +R+H +RE
Sbjct: 476 YETMKRIARLQSPDLRQIDLDVNRTYRDHIMFRE 509
>SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1183
Score = 91.5 bits (217), Expect = 2e-18
Identities = 66/239 (27%), Positives = 105/239 (43%), Gaps = 10/239 (4%)
Query: 69 ELEREKKWLKMLEEWGTSETKQ---KLHRRIYKGIPNSLRIGVWSKLLDVNRMRSDNPGK 125
E +E W L E+G K H I KGIP++LR +W +PG
Sbjct: 387 ETVKEHLWRLHLAEYGRGVCMYRTVKTHELILKGIPDNLRAEIWLIFSGAINEIETHPGY 446
Query: 126 YREMLKLAKLWST-DVRQIDSDVNRQFREHQFYRERYSEKQCSLFNVLCAYSLYNSEVGY 184
Y +++ + S+ +I+ D++R EH ++ +L VL AY+ N +GY
Sbjct: 447 YVSLVEQCEGKSSLAFDEIERDLHRSLPEHPAFQSDVGIG--ALRRVLTAYAWRNPSIGY 504
Query: 185 CQGMSGLAGVLLMYMDEEDAFWALAVLLSDKKYAMHGLYIEGFPKLTRFLEHHDKILTKF 244
CQ M+ +A VLL+Y EE AFW L + + + G E +
Sbjct: 505 CQAMNIVASVLLLYCTEEQAFWLLVAVCERLLPDYYNTKVVGALVDQGVFE---DLTRDH 561
Query: 245 MPKLKRHFDKFGLDAILYSLKWFFVCFVERVPFSLCLRVWDIYLLDGERVITAMAYTIL 303
+P+L H G+ + SL WF F+ +PF + + D + DG +V+ + T L
Sbjct: 562 LPELYDHLKDLGI-LNMISLSWFLTLFLSVMPFVCAVNIIDCFFYDGAKVLFKITVTYL 619
>SB_48859| Best HMM Match : TBC (HMM E-Value=7.1e-12)
Length = 660
Score = 91.1 bits (216), Expect = 2e-18
Identities = 61/241 (25%), Positives = 119/241 (49%), Gaps = 12/241 (4%)
Query: 78 KMLEEWGTSETKQKLHRRIYKGIPNSLRIGVWSKLLDVNRMRSDNPGKYREMLKLAKLWS 137
++L W + + +K ++G+P S+R +W KL N ++ E+L + + +
Sbjct: 380 EILPNWESMKHSRKAKELWWQGLPPSVRGKIW-KLAIGNDLQITY-----ELLDIFQSHA 433
Query: 138 TDVRQIDSDVNRQFREHQFYRERYSEKQCSLFNVLCAYSLYNSEVGYCQGMSGLAGVLLM 197
+ + + NR+ + + + L ++L AY+ Y +VGY QGMS +A VLL+
Sbjct: 434 YEKLMVTRN-NRKKNKESGSGGPFHDV---LHSILGAYTCYRPDVGYVQGMSFIAAVLLL 489
Query: 198 YMDEEDAFWALAVLLSDKKYAMHGLYIEGFPKLTRFLEHHDKILTKFMPKLKRHFDKFGL 257
++ DAF + A LL+ K + P + + + +L++F+ KL HF
Sbjct: 490 NLEPPDAFISFANLLN--KPCQLAFFRVDHPMMKAYFATFEILLSEFLNKLHEHFHHESF 547
Query: 258 DAILYSLKWFFVCFVERVPFSLCLRVWDIYLLDGERVITAMAYTILKLHKKTIMKLNDMD 317
+Y + W F F + +P + RVWD++ DG+ + A ILK ++ +++++ +
Sbjct: 548 SPDMYLIDWIFTLFSKSLPLDVACRVWDVFCRDGDDFLFRTALGILKFYQDDLLEMDFIH 607
Query: 318 L 318
L
Sbjct: 608 L 608
>SB_58221| Best HMM Match : TBC (HMM E-Value=2.9e-08)
Length = 580
Score = 83.8 bits (198), Expect = 4e-16
Identities = 81/281 (28%), Positives = 127/281 (45%), Gaps = 37/281 (13%)
Query: 62 APQKINIELEREKKWLKMLEEWGTSETKQKLHRRIYKG-IPNSLRIGVWSKLLDVNRM-- 118
APQ E E +W ML++ G +KLH RI++G I SLR VW LL +
Sbjct: 155 APQVSREEPLSEDEWRTMLDKSGRVINIKKLHERIFRGGISPSLRGDVWRFLLGYYKYGC 214
Query: 119 -----RSDNPGKYREMLKLAKLWST----------DVRQ----IDSDVNRQFREHQFYRE 159
++ K E + W T + R+ +D DV R R H +Y E
Sbjct: 215 TFESRKTLCRAKEDEYQTMKMQWQTISAKQEKRFAEFRERKQLVDKDVTRTDRTHPYYVE 274
Query: 160 RYSEKQC--SLFNVLCAYSLYNSEVGYCQGMSG-LAGVLLMYMDEEDAFWALAVLLSDKK 216
+ +E L++VL Y +YN ++GY QGMS L+ VL + +E DAFW L+ +K
Sbjct: 275 KETENDNVRKLYDVLMTYCMYNFDLGYVQGMSDLLSPVLFLVENEVDAFWCFVGLM--EK 332
Query: 217 YAMHGLYIEGFPKLTRFLEHHDKILTKFM-PKLKRHFDKFGLDAILYSLKWFFVCFVERV 275
A + + E + L H +L KF+ P + +K + + +W +CF
Sbjct: 333 MAHN--FDENQEGMKMQL-HQLGVLLKFVDPGFYTYLEKHDSGNLYFCFRWLLICFKREF 389
Query: 276 PFSLCLRVWDIY----LLDGERVITAMAYTILKLHKKTIMK 312
F + +W+ + L +I +A IL H++ IM+
Sbjct: 390 SFDDIMTLWEAFWTQNLSPNFHLIVCLA--ILDRHRQVIME 428
>SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 81.8 bits (193), Expect = 1e-15
Identities = 47/139 (33%), Positives = 75/139 (53%), Gaps = 5/139 (3%)
Query: 76 WLKMLEEWGTSETK-QKLHRRIYKGIPNSLRIGVWSKLLDVNRMRSDNPGKYREMLKLAK 134
W ++L +W T+ ++L + + KGIP LR VW + + S+N L
Sbjct: 386 WSELLSKWKDVSTRPRQLVQLVRKGIPEPLRGQVWQMMAGL----SENDELVDSYKHLFT 441
Query: 135 LWSTDVRQIDSDVNRQFREHQFYRERYSEKQCSLFNVLCAYSLYNSEVGYCQGMSGLAGV 194
S + I D++R F H ++++ E Q +L+ + AYS+Y+ EVGYCQG+S V
Sbjct: 442 KESPTEQVIVWDIHRTFPAHDYFKDSGGEGQEALYKISKAYSVYDEEVGYCQGLSFFIAV 501
Query: 195 LLMYMDEEDAFWALAVLLS 213
LL++M EE AF L ++S
Sbjct: 502 LLLHMPEEQAFAVLVKIMS 520
>SB_32178| Best HMM Match : TBC (HMM E-Value=3.2e-06)
Length = 759
Score = 78.2 bits (184), Expect = 2e-14
Identities = 38/137 (27%), Positives = 75/137 (54%), Gaps = 3/137 (2%)
Query: 188 MSGLAGVLLMYMDEEDAFWALAVLLSDKKYAMHGLYIEGFPKLTRFLEHHDKILTKFMPK 247
M+ L G+ L++M EE+AFW+L ++ + + G + E E +++ + +P
Sbjct: 1 MNFLVGLFLLFMGEEEAFWSLVAVV---QVYLKGYFDEFLIGAQADQEVLKELVCEKLPA 57
Query: 248 LKRHFDKFGLDAILYSLKWFFVCFVERVPFSLCLRVWDIYLLDGERVITAMAYTILKLHK 307
L HF +G+D + W +++ VPF LR+WD +L +G V+ +A +LKL +
Sbjct: 58 LHAHFKYYGVDLSTVTFNWLITIYLDAVPFETGLRIWDCFLYEGREVLFRVAIGLLKLQQ 117
Query: 308 KTIMKLNDMDLIVNYIQ 324
+ +++L+ I+ Y++
Sbjct: 118 RALLQLSGPLEIMQYMK 134
>SB_51958| Best HMM Match : TBC (HMM E-Value=0.00039)
Length = 491
Score = 62.9 bits (146), Expect = 7e-10
Identities = 41/161 (25%), Positives = 84/161 (52%), Gaps = 8/161 (4%)
Query: 127 REMLKLAKLWSTDVRQIDSDVNRQFREHQFYRERYSEKQCSLFNVLCAYSLYNSEVGYCQ 186
R+++ + KL + +R ID DV R R H F++ + + L ++L Y+ Y+ +VGY Q
Sbjct: 229 RQVIDIEKL-NKSIRSIDKDVPRTDRAHPFFKGQGNPNLIVLRDILITYAAYHQDVGYAQ 287
Query: 187 GMSG-LAGVLLMYMDEEDAFWALAVLLSDKKYAMHGLYIEGFPKLTRFLEHHDKILTKFM 245
GM+ L+ L++ + E++A+ A + K G +++ + +E K+L +
Sbjct: 288 GMNDILSRFLVVLVAEDEAYSCFANYMEHVK----GDFLDS--TMMNKIELVGKLLKQMD 341
Query: 246 PKLKRHFDKFGLDAILYSLKWFFVCFVERVPFSLCLRVWDI 286
+L++HF + +L+ +W + F F L++++I
Sbjct: 342 RQLEQHFTSNDMGDLLFVHRWLVLGFKREFCFEEALKLFEI 382
>SB_48678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 578
Score = 61.3 bits (142), Expect = 2e-09
Identities = 78/315 (24%), Positives = 127/315 (40%), Gaps = 31/315 (9%)
Query: 75 KWLKMLEEWGTSETKQKLHRRIYK-GIPNSLRIGVWSKLLDV--NRMRSDNPGKYREMLK 131
+W L+ G +++ RI++ G SLR VW+ LL V + D K+ ++K
Sbjct: 168 EWPAFLDCEGRLIWREEFFSRIFQCGSEPSLRKEVWAHLLHVFPPDLTQDEREKFL-LMK 226
Query: 132 LAKLW-------STDVRQIDS-------DVNRQFREHQFYRERYSEKQC-SLFNVLCAYS 176
W + D I+S DV R R H ++ SLFN+L Y+
Sbjct: 227 AQVYWHLRSDWMARDPLDIESVSHMVQKDVVRTDRVHPYFDVTDDHPHIRSLFNILVTYA 286
Query: 177 LYNSEVGYCQGMSGLAGVLLMYM-DEEDAFWALAVLLSDKKYAMHGLYIEGFPKLTRFLE 235
L N +V Y QGMS LA +L+ M DE A+ L++ M ++ +T+ +
Sbjct: 287 LANPDVSYVQGMSDLASPILVVMNDEALAYTCFCALMA----RMKSHFLLDSRTVTQKFD 342
Query: 236 HHDKILTKFMPKLKRHFDKFGLDAILYSLKWFFVCFVERVPFSLCLR----VWDIYLLDG 291
H +L K P+ ++ G D + + +W + PF L +W L G
Sbjct: 343 HLSMLLQKTDPQYYKYLVDIGADDMFFCYRWLLLDLKREFPFEDVLNLMEVIWSTVTLPG 402
Query: 292 ERVITAMAY-TILKLHKKTIMKLNDMDLIVNYIQVKLHKDFGYEDDIVIYQLEKSMEELK 350
++ Y + +K T N + V+ ++ DD + S E L
Sbjct: 403 SPGSSSQTYNSAVKAKVATENFFNQPEETVSPDSGVEAEESDCSDD--SFSFISSKESLV 460
Query: 351 RAKLDYPGLPPPNEL 365
++ LP P EL
Sbjct: 461 SSETSLVQLPGPYEL 475
>SB_17043| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 556
Score = 60.9 bits (141), Expect = 3e-09
Identities = 45/200 (22%), Positives = 97/200 (48%), Gaps = 12/200 (6%)
Query: 164 KQCSLFNVLCAYSLYNS-EVGYCQGMSGLAGVL-LMYMDEEDAFWALAVLLSDKKYAMHG 221
K +FNV+ ++N +V + + + V ++ M EE+AF L+ D Y M
Sbjct: 158 KVTCVFNVIKVTCVFNVIKVTWVFNVINVTCVFNVIKMPEEEAFCVFVKLMQD--YRMRE 215
Query: 222 LYIEGFPKLTRFLEHHDKILTKFMPKLKRHFDKFGLDAILYSLKWFFVCFVERVPFSLCL 281
++ +L + + +L + +P+L HF G +Y+ WF F P +
Sbjct: 216 IFKPTMAELGLCMFQLENLLQESLPELYAHFQAQGFHTAMYASSWFLTLFASVFPLNAAF 275
Query: 282 RVWDIYLLDGERVITAMAYTILKLHKKTIMKLNDMDLIVNYIQVKLHKDFGYEDDI---- 337
RV D+++ +G + + + IL + ++ +++ DM+ ++ Y Q ++ D YE D+
Sbjct: 276 RVMDMFISEGRDGLFRIIFAILSMGQEELLE-RDMEGMLKYFQKEM-PDL-YEKDMDPVM 332
Query: 338 -VIYQLEKSMEELKRAKLDY 356
+ + + + +++KR + +Y
Sbjct: 333 KIASEYKFNSKKMKRLEKEY 352
Score = 48.8 bits (111), Expect = 1e-05
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 75 KWLKMLEEWGTSETKQKLHRR--IYKGIPNSLRIGVWSKLLDVNRMRSDNPGKYREMLKL 132
+W +++ W + K+ + R + KGIPN+LR VW +LL +R D P K E KL
Sbjct: 18 EWGQLMGNWDDAVRKKPKNVRDMVRKGIPNALRGLVW-QLLCGSR---DMPLK-DEYPKL 72
Query: 133 AKLWSTDVRQIDSDVNRQFREHQFYRERYSEKQCSLFNVL 172
K S R I D+ R F +H F++++ Q +LFNV+
Sbjct: 73 IKANSACERMIKRDIARTFPDHSFFKDKDGIGQGTLFNVI 112
>SB_36105| Best HMM Match : TBC (HMM E-Value=1.9e-09)
Length = 294
Score = 60.9 bits (141), Expect = 3e-09
Identities = 49/164 (29%), Positives = 73/164 (44%), Gaps = 24/164 (14%)
Query: 163 EKQCSLFNVLCAYSLYNSEVGYCQGMSGLAGVLLMYMD--EEDAFWALAV--LLSDKKYA 218
E++ +L VL AY+ +N VGYCQG + +A ++L MD EEDA +L Y
Sbjct: 125 EERAALKRVLLAYARWNKSVGYCQGFNVIAALILQVMDRSEEDALKSLTTGKFPQVMIYV 184
Query: 219 M-HGLYIEGFPKLTRFLEHHDKILTKFM----PKLKRHFDKFGLDAI------------- 260
+ H L F R L + M P+L RH + A
Sbjct: 185 IDHVLPTNYFSNNLRALSVDMAVCRDLMRLKLPRLSRHLENLQAQATAHHGGTSVYEPPL 244
Query: 261 --LYSLKWFFVCFVERVPFSLCLRVWDIYLLDGERVITAMAYTI 302
+++++WF F +P + LRVWD LL+G V+ +A I
Sbjct: 245 INVFTMQWFLTLFATCLPQEIVLRVWDSVLLEGSEVLLRVALAI 288
>SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 585
Score = 57.6 bits (133), Expect = 3e-08
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 46 TDRYGFIHDERLPQKTAPQKINIELEREKKWLKML---EEWGTSETKQKLHRRIYKGIPN 102
TDRYGF+ + +T + + ERE KWL+ML E+W T + K KL R KGIP
Sbjct: 36 TDRYGFVGKHKQASETT-LPVQVLREREIKWLEMLNNYEKWITKKYK-KLRERCRKGIPP 93
Query: 103 SLRIGVWSKLLDVNRMRSDNPGKYREML-KLAKLWSTDVRQIDSDVNRQFREHQFYRE 159
++R W L +M NP + ++ K + W I+ D+ R F H+ + +
Sbjct: 94 AVRGLAWRHLSGSIKMEKQNPNLFEDLASKPSPEWE---NTIEKDLCRVFPYHEQFTD 148
>SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)
Length = 1277
Score = 51.6 bits (118), Expect = 2e-06
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 8/150 (5%)
Query: 137 STDVRQIDSDVNRQFREHQFYRERYSEKQCSLFNVLCAYSLYNSEVGYCQGMSGLAGVLL 196
S ++ +ID DV R R + ++ + E L NV+ +Y VGY QGM L LL
Sbjct: 947 SMNLHRIDKDVQRCDRNYWYFTQ---ENLLKLRNVISSYVWTTLNVGYVQGMCDLVAPLL 1003
Query: 197 MYMDEEDAFWALAVLLSDKKYAMHGLYIEGFPKLTRFLEHHDKILTKFMPKLKRHFDKFG 256
+ D+E ++ V L D+ M+ + G F + ++ P++ H + G
Sbjct: 1004 VIFDDESITYSCFVQLMDR---MNNNFPHGGAMDLHF-SNMRSLIQVLDPEMFEHLQQNG 1059
Query: 257 -LDAILYSLKWFFVCFVERVPFSLCLRVWD 285
L + +WF + F + + +VW+
Sbjct: 1060 DLTHFYFCYRWFLLDFKRELLYDDVFKVWE 1089
>SB_4827| Best HMM Match : RCSD (HMM E-Value=1.7)
Length = 269
Score = 50.0 bits (114), Expect = 5e-06
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 315 DMDLIVNYIQVKLHKDFGYEDDIVIYQLEKSMEELKRAKLDYPGLPPPNELPKRPLGVFV 374
+++ +V ++Q +H + Y+DD V+ L+ SM ELKR LD P P +ELP+ P G +
Sbjct: 2 NLEEVVQFLQENMHA-YPYDDDEVVELLQSSMFELKRLGLDTPSPPKKDELPQLPPGAAL 60
Query: 375 EPDKKSKIGQRAENFSETEK 394
+ RA E K
Sbjct: 61 KRGTYQTASARARKNKEKNK 80
>SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11)
Length = 853
Score = 49.2 bits (112), Expect = 1e-05
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 157 YRERYSEKQCSLFNVLCAYSLYNSEVGYCQGMSG-LAGVLLMYMDEEDAFWALAVLL 212
+R RY+ ++L Y+++N E+GY QGMS L+ VL DE DAFW A L+
Sbjct: 779 FRRRYAICLSDCRSILLNYAIHNPEIGYSQGMSDLLSPVLAALQDEVDAFWCFAALM 835
>SB_10197| Best HMM Match : Rho_N (HMM E-Value=1.8)
Length = 335
Score = 44.0 bits (99), Expect = 4e-04
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 163 EKQCSLFNVLCAYSLYNSEVGYCQGMSGLAGVLLMYMD--EEDA 204
E++ +L VL AY+ +N VGYCQG + +A ++L MD EEDA
Sbjct: 290 EERAALKRVLLAYARWNKSVGYCQGFNVIAALILQVMDRSEEDA 333
>SB_3397| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 317
Score = 40.7 bits (91), Expect = 0.003
Identities = 39/170 (22%), Positives = 77/170 (45%), Gaps = 9/170 (5%)
Query: 24 GRENLVGLIDPWEDPEFEEYHKTDRYGFI--HDERLPQK-TAPQKINIELE-REKKWLKM 79
G+ + G I ED E EY D F+ D+ L K TA + + + W K+
Sbjct: 150 GQYDEFGFIMDGEDLE-HEYKDPDPGNFVTNEDDSLRLKWTAYLEFTQNQDVGDMTWDKV 208
Query: 80 LEEWGTSETKQKLHRRIYKGIPNSLRIGVWSKLLDVNRMRSDNPGKYREMLKLAKLWSTD 139
+ S+ KL + GIP+S+R +W ++ + + + Y+++++ + ++
Sbjct: 209 SPSFPHSD---KLRELVCSGIPHSMRAPIWMRISGALQKKINAEFTYKQVVRASSDENSP 265
Query: 140 V-RQIDSDVNRQFREHQFYRERYSEKQCSLFNVLCAYSLYNSEVGYCQGM 188
+QI+ D+ R + + S + +L + + ++GYCQGM
Sbjct: 266 ASKQIEKDLLRTMPNNACFSTPTSTGLLRMRRILRSLAWLYPDIGYCQGM 315
>SB_7605| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 667
Score = 39.9 bits (89), Expect = 0.006
Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 2/107 (1%)
Query: 198 YMDEEDAFWALAVLLSDKKYAMHGLYIEGFPKLTRFLEHHDKILTKFMPKLKRHFDKFGL 257
+ DE A+ L + KY + + P + +L +++ P+L H K G
Sbjct: 375 FNDEALAYACLTAFIP--KYLYNFFLKDNAPIIQEYLAVFSQLIAFHDPELFSHMHKIGF 432
Query: 258 DAILYSLKWFFVCFVERVPFSLCLRVWDIYLLDGERVITAMAYTILK 304
LY++ WF F P +WD LL + IL+
Sbjct: 433 IPELYAIPWFLTMFCHVFPLHKIYHLWDTLLLGNSSFPLCIGVAILQ 479
>SB_49879| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 763
Score = 38.3 bits (85), Expect = 0.018
Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 201 EEDAFWALAVLLSDKKYAMHGLYIEGFPKLTRFLEHHDKILTKFMPKLKRHFDKFGLDAI 260
E D+FW ++ LL + Y P + + + +++ + L +H + ++ +
Sbjct: 287 EADSFWCMSKLLD----GIQDNYTFAQPGIQKKVNALRELVQRIDEPLHKHLAEHNVEYL 342
Query: 261 LYSLKWFFVCFVERVPFSLCLRVWDIYLLDGER 293
+S +W + +P +R+WD YL+ R
Sbjct: 343 QFSFRWMNNLLMREMPLRSTIRLWDTYLMGPSR 375
>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1569
Score = 37.9 bits (84), Expect = 0.024
Identities = 50/296 (16%), Positives = 114/296 (38%), Gaps = 20/296 (6%)
Query: 32 IDPWEDPEFEEYHKTDRYGFIHDERLPQKTAPQKINIELEREKKWLKMLEEW---GTSET 88
+DPW+ E E F D LP+K K+ ++ K++ +W + +
Sbjct: 1 MDPWDFVELSEVQGH----FFTDFVLPEKATQTKVFDLSYTDENLDKLVGQWLEHPSRKN 56
Query: 89 KQKLHRRIYKGIPNSLRIGVWSKLLDVNRMRSDNPGKYREMLKLAKLWSTDVRQIDSDVN 148
K+ + + G+ R +W + N Y++ + +
Sbjct: 57 TDKVIKLVKGGVRPDHRAILWKLVSGGIEKLETNQNYYQDTVNELGILIPGSLSSSMFTG 116
Query: 149 RQFREHQFYRERYSEKQCSLFNVLCAYSLYNSEVGYCQGMSGLAGVLLMYMDEEDAFWAL 208
+ F+ + EK ++ ++ + +S++ +C + LA + L +MDE + F +L
Sbjct: 117 SDNKLCCFFLGQDGEK--AMLGIVYVLTHVHSDIQFCPLLPVLAALFLHFMDERECFASL 174
Query: 209 AVLLSDKKYAMHGLYIEGFPKLTRFLEHHDKILTKFMPKLKRHFDKF-------GLDAIL 261
+ L+ + HG+ + + + + L KF ++ K +
Sbjct: 175 SALMESR----HGILDQSQRAVAVTSKTFEDCLKKFKKSAYKNLKKVIESERESPVTKKS 230
Query: 262 YSLKWFFVCFVERVPFSLCLRVWDIYLLDGERVITAMAYTILKLHKKTIMKLNDMD 317
L ++ +E V F + + + D++L+ G +V+ I + ++ DM+
Sbjct: 231 ILLPYWLDWIMEYVDFWIVVSMMDVFLMKGSKVLIRFGLVIYDEFSRWLVAKQDMN 286
>SB_42698| Best HMM Match : SH3_1 (HMM E-Value=5.2e-16)
Length = 505
Score = 36.7 bits (81), Expect = 0.055
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 261 LYSLKWFFVCFVERVPFSLCLRVWDIYLLDGERVITAMAYTILKL 305
L +L WF F V + LR+WDIY +G + +LKL
Sbjct: 4 LITLHWFLTAFASVVHTKILLRIWDIYFYEGSVTLFRATLGMLKL 48
>SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18)
Length = 1311
Score = 35.1 bits (77), Expect = 0.17
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 336 DIVIYQLEKSMEELKRAKLDYPGLPPPNELPKRPLGVFVEPDKKSKI---GQRAENFSET 392
D ++ Q K E K A+ D PGL + LPK P G V+ SKI G++ + F +
Sbjct: 617 DTILRQTAKKEGENKGARPDIPGLASVSSLPK-PEGAAVDKFVPSKIILTGEKKKTFHKE 675
Query: 393 E---KQARANVILRREKAALELQELRVSQSDTVSE 424
E +A + R E A +Q+ R S S TV +
Sbjct: 676 ELTMSEAEKLIRTRTEHHAAVMQK-RQSGSTTVKK 709
>SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)
Length = 969
Score = 35.1 bits (77), Expect = 0.17
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Query: 415 RVSQSDTVSEHSGLASGVRCDDSVSGLGSRRSLADTSVTSTADLSVFSSGRSHAPDNSLD 474
R+S + + ++G+ CDDS GS D SV +T+D+ + R + + +D
Sbjct: 574 RLSLEEDALDSENKSNGLECDDSKPSNGSG---VDESVNATSDMCSANCTRVNDAYSDMD 630
Query: 475 THSNVXXXXXXXXXXXVCGMSIQRA-PSTSHSTPRATPHPPSASP 518
T SN S+ ST+ ++P+ PS P
Sbjct: 631 TTSNSSTQTKDSGIWGCDAYSVDTGEASTTRHLGNSSPNLPSQEP 675
>SB_42263| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 34.7 bits (76), Expect = 0.22
Identities = 41/218 (18%), Positives = 90/218 (41%), Gaps = 9/218 (4%)
Query: 139 DVRQIDSDVNRQFREHQFYRERYSEKQCSLFNVLCAYSLYNSEVGYCQGMSGLAGVLLMY 198
+ +D V + +E + R + + Q L NV+ + + Y QG +A LL+
Sbjct: 143 NANSLDISVTKNKKEMRVSRRKVLQSQ--LTNVIMRVICKHQNLHYYQGYHDIAVTLLLV 200
Query: 199 MDEEDAFWALAVLLSDKKYAMHGLYIEGFPKLTRFLEHHDKILTKFMPKLKRHFDKFGLD 258
+ E+ A A+L + + K + L I+ + P+L+ + +
Sbjct: 201 VGED---LATALLEQLSLHQLRDFMEPTMEKTNKMLSFIHPIIQEADPELEDFLIRSEVG 257
Query: 259 AILYSLKWFFVCFVERV-PFSLCLRVWDIYLLDGERVITAMAYTILKLHKKTIMKLNDMD 317
+++L W + + F +R++D +L + +A L +H++ + L + D
Sbjct: 258 Q-MFALSWLITWYGHVIQDFDTIVRLYDFFLATHPLMPVYLA-AALVIHRRDDVLLGECD 315
Query: 318 L-IVNYIQVKLHKDFGYEDDIVIYQLEKSMEELKRAKL 354
+ V++ K+ DF + +I + E+ K+
Sbjct: 316 MAFVHHSLSKIPSDFSSRVEELITSTKYLFEKYSPEKM 353
>SB_19355| Best HMM Match : MFS_1 (HMM E-Value=1.8e-22)
Length = 572
Score = 33.9 bits (74), Expect = 0.39
Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 2/124 (1%)
Query: 431 GVRCDDSVSGLGSRRSLADTSVTSTADLSVFSSGRSHAPDNSLDTHSNVXXXXXXXXXXX 490
G+ DD+ + S S D S D+SV + RS + L HS++
Sbjct: 446 GIVGDDNYRDVSSYNSKLDPDTLSAIDVSVLGTRRSSRQGSMLSRHSSILGRHGSILSRK 505
Query: 491 VCGMSIQRAPSTSHSTPRATPHPPSASPMSDDVVRIHVTYNPLTASPSHLHPVSPKKYKT 550
M + + S+ R TP P P++ + I ++A P+ P+ T
Sbjct: 506 HSEMGRPGSMISRQSSLRGTPSPEHV-PLTTALEPIEEVQADVSAKPADT-PMRVSSLPT 563
Query: 551 YTDD 554
T++
Sbjct: 564 VTEE 567
>SB_49341| Best HMM Match : Rad21_Rec8_N (HMM E-Value=2.3)
Length = 549
Score = 33.5 bits (73), Expect = 0.51
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 503 SHSTPRATP-HPPSASPMSDDVVRIHVTYNPLTASPSHLHPVSPKKY--KTYTDDHLKPI 559
SH+ P +TP H P S S+ ++ P ++PSH PVS + T H P+
Sbjct: 415 SHTPPVSTPSHTPPVSTPSNTPPVSTPSHTPPVSTPSHTPPVSTPSHTPPVSTPSHTPPV 474
Query: 560 SLGFYT 565
S +T
Sbjct: 475 STPSHT 480
Score = 31.1 bits (67), Expect = 2.7
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 503 SHSTPRATP-HPPSASPMSDDVVRIHVTYNPLTASPSHLHPVSPKKY--KTYTDDHLKPI 559
SH+ P +TP H P S S ++ P ++PSH PVS T H P+
Sbjct: 388 SHTPPVSTPSHTPPVSTPSHTPPVSTPSHTPPVSTPSHTPPVSTPSNTPPVSTPSHTPPV 447
Query: 560 SLGFYT 565
S +T
Sbjct: 448 STPSHT 453
Score = 30.7 bits (66), Expect = 3.6
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 503 SHSTPRATP-HPPSASPMSDDVVRIHVTYNPLTASPSHLHPVSPKKY--KTYTDDHLKPI 559
SH+ P +TP H P S S ++ P ++PSH PVS +T H P+
Sbjct: 442 SHTPPVSTPSHTPPVSTPSHTPPVSTPSHTPPVSTPSHTPPVSTPSNTPPVFTPSHTPPV 501
>SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)
Length = 851
Score = 32.7 bits (71), Expect = 0.89
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 494 MSIQRAPSTSHSTPRATPHPPSAS-PMSDDVVRIHVTYNPLTASPSH-LHPVSPKKYKTY 551
+ I R S R P P P SDD +R+H++ + SP + P+SP++ +T
Sbjct: 304 VQIHRTMSLPPDAGRGRPSVPKLELPASDDEMRLHISTDSPPMSPRYDAPPMSPRRRRTS 363
Query: 552 T 552
T
Sbjct: 364 T 364
>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
Length = 287
Score = 31.9 bits (69), Expect = 1.6
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Query: 496 IQRAPSTSHSTPR-ATPHPPSASPMSDDVVRIHVTYNPLTASPSHLHPVSPKKYKTYTDD 554
++ PSTS S+ R ATP+ P V + +Y P A + P +P Y T
Sbjct: 129 VRSVPSTSPSSVRSATPYYPQTQQQQSSVSSSY-SYYPRAAPSYYYSPPAPAAYAPSTAT 187
Query: 555 HLKPISLGFYTSNGTNNVPSDNRIRIQVPS 584
+ G +T + + P +R PS
Sbjct: 188 ATVAAAGGVFTESTPLHPPLSAPVRAPSPS 217
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 31.9 bits (69), Expect = 1.6
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 499 APSTSHSTPRATPHPPSASPMSDDVVRIHVTYNPLTASPSHLHPVSP 545
+PS S ++P +P PS SP S +Y+P ASPS+ P SP
Sbjct: 679 SPSYSPASPSYSPTSPSYSPASPSYTSASPSYSP--ASPSY-SPTSP 722
Score = 30.3 bits (65), Expect = 4.7
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 499 APSTSHSTPRATPHPPSASPMSDDVVRIHVTYNPLTASPSHLHPVSP 545
+PS S + P +P PS SP S +Y P ASPS+ P SP
Sbjct: 721 SPSYSPAIPSNSPASPSYSPASPSYTPASPSYTP--ASPSYT-PASP 764
Score = 29.9 bits (64), Expect = 6.3
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 495 SIQRAPSTSHSTPRATPHPPSASPMSDDVVRIHVTYNPLTASPSHLHPVSP 545
++ +PS S ++P TP PS +P S +Y+P SPS+ P SP
Sbjct: 654 TLAASPSYSPASPSYTPASPSYTPTSPSYSPASPSYSP--TSPSY-SPASP 701
Score = 29.5 bits (63), Expect = 8.3
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 499 APSTSHSTPRATPHPPSASPMSDDVVRIHVTYNPLTASPSHLHPVSP 545
+PS S ++P +P PS SP S +Y P ASPS+ P SP
Sbjct: 714 SPSYSPTSPSYSPAIPSNSPASPSYSPASPSYTP--ASPSYT-PASP 757
>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1616
Score = 31.1 bits (67), Expect = 2.7
Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 10/131 (7%)
Query: 178 YNSEVGYCQGMSGLAGVLLMYMDEEDAFWALAVLLSDKKYAMHGLYIEGFPKLTRFLEHH 237
Y + G+ + ++ L + L D + F++L + G + F L++H
Sbjct: 120 YRTSSGFTEILAPLMMLDLPVSDVYNCFYSLLYKFIPRDCVRDG---KPFHLFRLLLQYH 176
Query: 238 DKILTKFMPKLKRHFDKFGLDAILYSLKWFFVCFVERVPFSLCLRVWDIYLLDGERVITA 297
D L FM K D Y L W V V + +WD+YLL+ + +
Sbjct: 177 DPELCSFMDSRKLSPDS-------YCLMWLRSLLVGAVEPDVVRTLWDVYLLESDPFLIF 229
Query: 298 MAYTILKLHKK 308
++ ++ K
Sbjct: 230 FLVLVMIVNAK 240
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 31.1 bits (67), Expect = 2.7
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 449 DTSVTSTADLSVFSSGRSHAPDNSLDTHSNVXXXXXXXXXXXVCGMSIQRAPSTSHSTPR 508
+TS++S A S +SG + AP++++ + V V S AP T+ S P
Sbjct: 1516 ETSISSEASESTVASGTTLAPESTVAPETTVASESTVTRGATVASASTD-APGTTVS-PE 1573
Query: 509 ATPHPPSASPMSDDVVRIHVTYNPLTASP 537
+T P + V + + TA+P
Sbjct: 1574 STFTPGTTVSPESTVAQESTVSSESTAAP 1602
>SB_49263| Best HMM Match : Surp (HMM E-Value=1e-28)
Length = 641
Score = 31.1 bits (67), Expect = 2.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 500 PSTSHSTPRATPHPPSASPMSDDVVR 525
P TSH+TP P PP P+ D + R
Sbjct: 378 PVTSHATPTIIPPPPDLQPIVDKLAR 403
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 30.7 bits (66), Expect = 3.6
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 502 TSHSTPRATPHPPSASPMSDDVVRIHVTYNPLTASPSHLHPVSPKKYKTYTDDHLKPISL 561
TS S + TP +P SD N +T SPSH+ P S + T + H+ P S
Sbjct: 965 TSTSDNQITPFASDFTPTSD---------NQVTPSPSHVTPTSNNQV-TPSPSHVTPTSD 1014
Query: 562 GFYTSNGTNNVPSDNRIRI 580
T +G + P + + I
Sbjct: 1015 DHVTPSGKDISPVQSELNI 1033
>SB_28420| Best HMM Match : DDE (HMM E-Value=0.00017)
Length = 609
Score = 29.5 bits (63), Expect = 8.3
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 15/83 (18%)
Query: 533 LTASPSHLHPVSPKKYKTYTDDHLKPISLGFYTSNGTNNV-PSDN-----RIRIQVPSED 586
L A H+H SPKK KP S+G N N+ PSD+ R +Q E
Sbjct: 51 LAAHLKHVHGTSPKK--------TKPSSVGASEQNSKGNLQPSDDSESDVRNAVQDAVEK 102
Query: 587 LLTPVVDSGRIINQRYLE-SHSD 608
+LT + ++N++ E SH++
Sbjct: 103 VLTQIAAENVVLNKKASEPSHAE 125
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 29.5 bits (63), Expect = 8.3
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 499 APSTSHSTPRATPHPPSASPMSDDVVRIHVTYNPLTASPSHLHPVSP 545
+PS S ++P +P PS SP S +Y+P +SPS H + P
Sbjct: 558 SPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSP--SSPSFHHNLRP 602
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.135 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,412,938
Number of Sequences: 59808
Number of extensions: 961848
Number of successful extensions: 2578
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2501
Number of HSP's gapped (non-prelim): 86
length of query: 613
length of database: 16,821,457
effective HSP length: 86
effective length of query: 527
effective length of database: 11,677,969
effective search space: 6154289663
effective search space used: 6154289663
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)
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