GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000512-TA|BGIBMGA000512-PA|IPR000195|RabGAP/TBC
         (613 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    32   0.051
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    28   0.63 
AF008575-1|AAB87764.1|  525|Anopheles gambiae chitinase protein.       27   1.5  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           25   4.4  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    25   5.9  

>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 31.9 bits (69), Expect = 0.051
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 7/95 (7%)

Query: 451 SVTSTADLSVFSSGRSHAPDNSLDTHSNVXXXXXXXXXXXVCGMSIQRAPSTSH----ST 506
           ++ + + LS+ S    H P ++L +HS V               + Q+ P  SH    + 
Sbjct: 785 AMAAASPLSLSSKAPPH-PHSALSSHSPVGAGSHHLHHLH--HHAAQQPPPGSHPGAQTQ 841

Query: 507 PRATPHPPSASPMSDDVVRIHVTYNPLTASPSHLH 541
           P+ + HPP AS  S  V+    T++   A  +H H
Sbjct: 842 PQLSQHPPGASGRSSAVITPPSTHHQAAAVAAHHH 876


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 protein.
          Length = 2051

 Score = 28.3 bits (60), Expect = 0.63
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 137  STDVRQIDSDVNRQFREHQFYRERYSEKQC 166
            S D     S+  +  REH F +++Y+EK+C
Sbjct: 1935 SDDSNSSSSEERKPNREHFFEKQQYTEKEC 1964


>AF008575-1|AAB87764.1|  525|Anopheles gambiae chitinase protein.
          Length = 525

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/37 (35%), Positives = 16/37 (43%)

Query: 506 TPRATPHPPSASPMSDDVVRIHVTYNPLTASPSHLHP 542
           TP  T  PPS +P +  V     T  P  A+P    P
Sbjct: 403 TPSTTTMPPSVAPTTSTVAPGTTTTTPTGANPGTTQP 439


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 500 PSTSHSTPRAT--PHPPSASPMSDDVVRIHVTYNPLTASPSHLHPVSPKKYKTYTD 553
           PS++ STP+         AS  S   +   +  NP+ ASPS     +P K  T TD
Sbjct: 906 PSSARSTPKKQNLKFIDEASTPSTSAMAATIVPNPVQASPSPATAPAPAK-TTSTD 960


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 369 PLGVFVEPDKKSKIGQRA-ENFSETEKQARANVILRR 404
           PL + +E D K+    RA E+F+ET K+A     +R+
Sbjct: 874 PLCITLEEDSKNFRKSRAGESFTETAKKASRQASMRQ 910


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 642,688
Number of Sequences: 2123
Number of extensions: 28262
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 55
Number of HSP's gapped (non-prelim): 6
length of query: 613
length of database: 516,269
effective HSP length: 68
effective length of query: 545
effective length of database: 371,905
effective search space: 202688225
effective search space used: 202688225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)