GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000512-TA|BGIBMGA000512-PA|IPR000195|RabGAP/TBC
         (613 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              29   0.15 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    27   0.60 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   4.2  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   9.7  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   9.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   9.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   9.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   9.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 28.7 bits (61), Expect = 0.15
 Identities = 18/82 (21%), Positives = 30/82 (36%)

Query: 455  TADLSVFSSGRSHAPDNSLDTHSNVXXXXXXXXXXXVCGMSIQRAPSTSHSTPRATPHPP 514
            T D S       H    +L T++                MS +R   T+   P   PH  
Sbjct: 1029 TVDFSKEDGKEHHLQIMNLKTYTQYSVVVQAFNKVGSGPMSEERRQHTAEGVPEQPPHDT 1088

Query: 515  SASPMSDDVVRIHVTYNPLTAS 536
            + + ++   +RI     PL+A+
Sbjct: 1089 TCTTLTSQTIRISWMSPPLSAA 1110


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 0.60
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 405 EKAALELQELRVSQSDTVSEHSGLASG 431
           E   +ELQ+LR+S   ++   SGL SG
Sbjct: 366 EADIIELQDLRMSPLPSIRNRSGLVSG 392


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 579 RIQVPSEDLLTPVVDSGRIINQRYL 603
           R  VP+ DLLT   D+  I+  ++L
Sbjct: 402 RQSVPANDLLTTEKDNNEIVTAQFL 426


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 141 RQIDSDVNRQFREHQFYRERYSEKQ 165
           R    D NR++R+ + Y + ++EK+
Sbjct: 2   RSCSRDRNREYRKDRRYEKLHNEKE 26


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 141 RQIDSDVNRQFREHQFYRERYSEKQ 165
           R    D NR++R+ + Y + ++EK+
Sbjct: 2   RSCSRDRNREYRKDRRYEKLHNEKE 26


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 532 PLTASPSHLHPVSPKKYKTYTDDHLKPISL------GFYTSNGTNNV 572
           P + +P+      P   K   D + KP +       G+ T+NG NNV
Sbjct: 274 PTSENPADYRYFCPDGSKVPIDANTKPCTWAARPWQGYMTNNGVNNV 320


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 532 PLTASPSHLHPVSPKKYKTYTDDHLKPISL------GFYTSNGTNNV 572
           P + +P+      P   K   D + KP +       G+ T+NG NNV
Sbjct: 274 PTSENPADYRYFCPDGSKVPIDANTKPCTWAARPWQGYMTNNGVNNV 320


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 9.7
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 6/47 (12%)

Query: 532 PLTASPSHLHPVSPKKYKTYTDDHLKPISL------GFYTSNGTNNV 572
           P + +P+      P   K   D + KP +       G+ T+NG NNV
Sbjct: 274 PTSENPADYRYFCPDGSKVPIDANTKPCTWAARPWQGYMTNNGVNNV 320


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.135    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,704
Number of Sequences: 429
Number of extensions: 8992
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 8
length of query: 613
length of database: 140,377
effective HSP length: 62
effective length of query: 551
effective length of database: 113,779
effective search space: 62692229
effective search space used: 62692229
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)