Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000511-TA|BGIBMGA000511-PA|IPR002347|Glucose/ribitol
dehydrogenase, IPR002198|Short-chain dehydrogenase/reductase SDR
         (255 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    57   2e-10
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    30   0.018
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    30   0.018
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    25   0.89 

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 56.8 bits (131), Expect = 2e-10
 Identities = 52/205 (25%), Positives = 99/205 (48%), Gaps = 18/205 (8%)

Query: 6   VALVTGGSSGLGKATAELLVKQGGRVVICDLPSTKGQNTAKSL-GENAVFAPV--DVTSE 62
           VALVTG +SG+GK   E LV +G +V+       K +   + L  +     P+  D++++
Sbjct: 9   VALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLVEELKSKPGKLVPLQCDLSNQ 68

Query: 63  DDVKEALQITLDKFGRLDALINCAGVASASRVYNFKKEQPFDLNIFQNTIQVNLIGTFNV 122
           +D+ + ++      G +D LIN A +     + N   ++  D   ++    +NL+G   +
Sbjct: 69  NDILKVIEWVEKNLGAIDILINNATINIDVTLQN---DEVLD---WKKIFDINLLGLTCM 122

Query: 123 IRLAVGLIGKNAPDADGQRGVVINTASVAAFD---GQIGQAAYSASKAGVVGMTLPLARD 179
           I+  + L+ K   +     G+++N    +  +       + AY ASK  +  +T  L  +
Sbjct: 123 IQEVLKLMKKKGIN----NGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSE 178

Query: 180 MA--KQGIRVVTIAPGLFRTPMMEQ 202
           +A  +  I+V++I+P L  T M  Q
Sbjct: 179 LAQCESNIKVISISPDLVETDMTAQ 203


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 30.3 bits (65), Expect = 0.018
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 12/91 (13%)

Query: 56  PVDVTSEDDVKEALQITLDKFGRLDALINCAGVASASRVYNFKKEQPFDLNIFQNTIQVN 115
           P+ + ++  + E LQ  LD   RLD  I+C  ++   + ++  +    DL++ Q TI + 
Sbjct: 42  PLVMDTKLKIIEILQFILDV--RLDYRISCL-LSIFKQEFDETERASGDLSLGQKTIDLE 98

Query: 116 LIGTFNVIRLAVGLIGKN----APDADGQRG 142
           LIGT      A G+ G +    A D DGQ G
Sbjct: 99  LIGT-----QAEGIFGSSEECVALDLDGQGG 124


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 30.3 bits (65), Expect = 0.018
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 12/91 (13%)

Query: 56  PVDVTSEDDVKEALQITLDKFGRLDALINCAGVASASRVYNFKKEQPFDLNIFQNTIQVN 115
           P+ + ++  + E LQ  LD   RLD  I+C  ++   + ++  +    DL++ Q TI + 
Sbjct: 10  PLVMDTKLKIIEILQFILDV--RLDYRISCL-LSIFKQEFDETERASGDLSLGQKTIDLE 66

Query: 116 LIGTFNVIRLAVGLIGKN----APDADGQRG 142
           LIGT      A G+ G +    A D DGQ G
Sbjct: 67  LIGT-----QAEGIFGSSEECVALDLDGQGG 92


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 10  TGGSSGLGKATAELLVKQGGRVVICDL-PSTKGQNTAKSLGENAVFAPVDVTSEDDV 65
           TG S G G A A  L+ +   V  C L  ++   +TA S   +       V+  D+V
Sbjct: 152 TGSSCGPGAAAAAALLSKRRSVSECSLGTASSTSSTASSRNSDRSAGSPSVSESDEV 208


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,702
Number of Sequences: 429
Number of extensions: 2477
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 255
length of database: 140,377
effective HSP length: 56
effective length of query: 199
effective length of database: 116,353
effective search space: 23154247
effective search space used: 23154247
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)