Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000510-TA|BGIBMGA000510-PA|IPR001660|Sterile alpha motif
SAM, IPR010993|Sterile alpha motif homology
         (133 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30084| Best HMM Match : No HMM Matches (HMM E-Value=.)              91   3e-19
SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   8e-10
SB_49143| Best HMM Match : SAM_1 (HMM E-Value=5.9e-07)                 57   6e-09
SB_45977| Best HMM Match : MBT (HMM E-Value=0)                         54   5e-08
SB_18419| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   7e-08
SB_22662| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   1e-05
SB_35389| Best HMM Match : SAM_1 (HMM E-Value=3.5e-10)                 35   0.026
SB_6741| Best HMM Match : WD40 (HMM E-Value=0)                         33   0.078
SB_12629| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.10 
SB_16056| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.18 
SB_44425| Best HMM Match : SAM_1 (HMM E-Value=0.00024)                 28   2.9  
SB_27117| Best HMM Match : SAM_1 (HMM E-Value=6.3e-07)                 27   5.1  
SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08)                 27   5.1  
SB_59693| Best HMM Match : Phage_integr_N (HMM E-Value=2.3)            27   6.8  
SB_26413| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  

>SB_30084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 91.1 bits (216), Expect = 3e-19
 Identities = 37/77 (48%), Positives = 60/77 (77%)

Query: 57  ANKWTVAEVCEFIRNIPGCAGYADEFLMQEVDGEALLLIKPEHLVMALSMKLGPALKIVA 116
           A KW++ +V +FIR++ GC+ +AD F+ +E+DG+AL+L++ EH+V+A+ MKLGPALKIVA
Sbjct: 59  AAKWSIDQVADFIRSLQGCSEHADSFIAEEIDGQALMLLREEHMVVAMKMKLGPALKIVA 118

Query: 117 CIDSLRPESEQNLHDHD 133
            +D+++ E+    H  D
Sbjct: 119 KVDTMKREAMLREHGTD 135


>SB_34911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 904

 Score = 59.7 bits (138), Expect = 8e-10
 Identities = 27/74 (36%), Positives = 46/74 (62%)

Query: 60  WTVAEVCEFIRNIPGCAGYADEFLMQEVDGEALLLIKPEHLVMALSMKLGPALKIVACID 119
           W V +VC+FI ++ G      EF    +DG++L+L++ EHL+  + +KLGPALKI A I 
Sbjct: 826 WGVDDVCKFILSLTGVPEVVAEFREHSIDGQSLILLQEEHLLNRMGIKLGPALKIKAHIR 885

Query: 120 SLRPESEQNLHDHD 133
            +  + + +  ++D
Sbjct: 886 KILEKLQSSQENND 899


>SB_49143| Best HMM Match : SAM_1 (HMM E-Value=5.9e-07)
          Length = 182

 Score = 56.8 bits (131), Expect = 6e-09
 Identities = 30/67 (44%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 48  DSAQAKIPNANKWTVAEVCEFIRNIPGCAGYADEFLMQEVDGEALLLIKPEHLVMALSMK 107
           D   A+    +KWT+ EV   +R++ GC   A  F  Q++DGEA LL+  + LV  L +K
Sbjct: 110 DKPSAERMRMSKWTLDEVENHVRSL-GCVEQAKIFPEQQIDGEAFLLLTQQDLVNILKIK 168

Query: 108 LGPALKI 114
           LGPALKI
Sbjct: 169 LGPALKI 175


>SB_45977| Best HMM Match : MBT (HMM E-Value=0)
          Length = 1198

 Score = 53.6 bits (123), Expect = 5e-08
 Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 58   NKWTVAEVCEFIRNIPGCAGYADEFLMQEVDGEALLLIKPEHLVMALSMKLGPALKIVAC 117
            +KW V +V + I ++ GC   A  F  Q++DGEALLL+    +V  L +KLGPALKI   
Sbjct: 1136 SKWDVDDVVKHITDL-GCPDQAKIFKEQQIDGEALLLLNQNDIVHILKIKLGPALKIYKS 1194

Query: 118  I 118
            I
Sbjct: 1195 I 1195


>SB_18419| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 911

 Score = 53.2 bits (122), Expect = 7e-08
 Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 60  WTVAEVCEFIRNIPGCAGYADEFLMQEVDGEALLLIKPEHLVMALSMKLGPALKIVACID 119
           W + +V  F+ +I GC+ YA+ F+ +E+DG+ALLL+  E L      KLGP  KI   + 
Sbjct: 845 WNMQDVANFMLSI-GCSNYAEAFIKEEIDGKALLLLTQEMLESLTENKLGPMTKIHNAVR 903

Query: 120 SLR 122
           +L+
Sbjct: 904 ALK 906


>SB_22662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 57  ANKWTVAEVCEFIRNIPGCAGYADEFLMQEVDGEALLLIKPEHLVMALSMKLGPALKIVA 116
           A  W+V EV ++I      A +   F   E+DG ALLL+  + ++  + +KLGPA+K++ 
Sbjct: 12  AKTWSVDEVVKYIEKTE-LAEHIPLFRQHEIDGRALLLLTRQIIMSYMGLKLGPAIKLLD 70

Query: 117 CIDSLR 122
            ++ L+
Sbjct: 71  LVNDLK 76


>SB_35389| Best HMM Match : SAM_1 (HMM E-Value=3.5e-10)
          Length = 246

 Score = 34.7 bits (76), Expect = 0.026
 Identities = 17/68 (25%), Positives = 36/68 (52%)

Query: 60  WTVAEVCEFIRNIPGCAGYADEFLMQEVDGEALLLIKPEHLVMALSMKLGPALKIVACID 119
           W+  +V     N  G    +++F+  +++G+ L+L++  HLV      LG  LK++  I 
Sbjct: 33  WSCDDVVMNFLNKAGLQYLSEQFVANKINGKCLMLLQEHHLVEMGIQCLGDRLKLMDLIQ 92

Query: 120 SLRPESEQ 127
            L+ + ++
Sbjct: 93  LLKKKKKE 100


>SB_6741| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 714

 Score = 33.1 bits (72), Expect = 0.078
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 3/97 (3%)

Query: 37  VEMADSQPTSADSAQAKIPNANKWTVAEVCEFIRNIPGCAGYADEFLMQEVDGEALLLIK 96
           ++++D +P+     + K      WTV EVC ++ +I G A Y++ F    +DG  L  + 
Sbjct: 587 LQLSDVEPSVLQRGERK--RLVTWTVEEVCTWLESI-GLAQYSEVFRNNAIDGHELSNMT 643

Query: 97  PEHLVMALSMKLGPALKIVACIDSLRPESEQNLHDHD 133
              L+  L++    A    A  D    + + +  D D
Sbjct: 644 GNVLLTDLTIDDDDAAAAAADDDDDADDDDDDDDDDD 680


>SB_12629| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 435

 Score = 32.7 bits (71), Expect = 0.10
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 37  VEMADSQPTSADSAQAKIPNANKWTVAEVCEFIRNIPGCAGYADEFLMQEVDGEAL 92
           ++++D +P+     + K      WTV EVC ++ +I G A Y++ F    +DG  L
Sbjct: 305 LQLSDVEPSVLQRGERK--RLVTWTVEEVCTWLESI-GLAQYSEVFRNNAIDGHEL 357


>SB_16056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 31.9 bits (69), Expect = 0.18
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 51  QAKIPNANKWTVAEVCEFIRNIPGCAGYADEFLMQE-VDGEALLLIKPEHLVMALSMK-L 108
           + K+P  ++W+  EV  ++ NI G   Y  EF+    +DG+ LL++    L  +L ++ L
Sbjct: 4   EEKLP-VSQWSSEEVGLWLENI-GYGDYYKEFVNDNRIDGQVLLILTENDLKDSLGIRVL 61

Query: 109 GPALKIVACIDSLRPESEQN 128
           G   ++   I+ L+ E  ++
Sbjct: 62  GDRKRLWLAINKLQQEHSKS 81


>SB_44425| Best HMM Match : SAM_1 (HMM E-Value=0.00024)
          Length = 414

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 63  AEVCEFIRNIPGCAGYADEFLMQEVDGEALLLIKPEHL 100
           +EVCE +++  G  GY ++F  + +DG     +  + L
Sbjct: 342 SEVCECLQDF-GLGGYVEKFAKERIDGSLFACLDKDSL 378


>SB_27117| Best HMM Match : SAM_1 (HMM E-Value=6.3e-07)
          Length = 367

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 59  KWTVAEVCEFIRNIPGCAGYADEFLMQEVDGEALLLIKPEHLVMALSMK 107
           +WTV +V   + +I     YA+ F  ++VDG   L++  + L     +K
Sbjct: 300 EWTVNDVANHLVHIK-LGKYAEAFKQKQVDGSLFLVLNEDILRQDFGIK 347


>SB_27115| Best HMM Match : SAM_1 (HMM E-Value=1.7e-08)
          Length = 527

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 55  PNANKWTVAEVCEFIRNIPGCAGYADEFLMQEVDGEAL 92
           P+   W++ +V EF+R+I     Y + F   ++DG  L
Sbjct: 449 PSMKDWSIDDVSEFLRSIK-LDKYVEVFRENQIDGMLL 485


>SB_59693| Best HMM Match : Phage_integr_N (HMM E-Value=2.3)
          Length = 319

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 25  RDANVKAEASSNVEMADSQPTSADSAQAKIPNANKW 60
           RD  V ++  S+      Q  +A   Q  + NANKW
Sbjct: 162 RDVKVVSQLRSSCNAFQRQARAAQPTQEDLVNANKW 197


>SB_26413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)

Query: 74  GCAGYADEFLMQEVDGEALLLIKPEHLVMAL 104
           G A Y  ++L  E D E +L+ +P+ + +AL
Sbjct: 94  GTANYLQKWLKDEYDNENILIQRPDMVQLAL 124


>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1850

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 27  ANVKAEASSNVEMADSQPTSADSAQAKI--PNANKWTVAEV 65
           ++  A A +  + AD+QPTS ++A   +  P  NK+   EV
Sbjct: 319 SDTHAVADAKTKQADAQPTSTETATKPVETPVENKFYPTEV 359


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.129    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,651,595
Number of Sequences: 59808
Number of extensions: 106923
Number of successful extensions: 208
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 16
length of query: 133
length of database: 16,821,457
effective HSP length: 75
effective length of query: 58
effective length of database: 12,335,857
effective search space: 715479706
effective search space used: 715479706
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 55 (26.2 bits)