GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000510-TA|BGIBMGA000510-PA|IPR001660|Sterile alpha motif
SAM, IPR010993|Sterile alpha motif homology
         (133 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    25   0.31 
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   2.9  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   2.9  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    20   8.8  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    20   8.8  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           20   8.8  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    20   8.8  

>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 24.6 bits (51), Expect = 0.31
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 62  VAEVCEFIRNIPGCAGY 78
           V + C+++RN+P CA +
Sbjct: 218 VGKKCDWVRNVPECADW 234


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 66  CEFIRNIPGCAGYADEFLMQEVDGEALL 93
           CE   ++PGC  Y  +  ++ +    LL
Sbjct: 211 CEDPEDVPGCEDYYGDLDLKSIRKSELL 238


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 46  SADSAQAKIPNANKWTVAEVCEFIRNIPG 74
           S   A+  + +AN+   A+    IRNIPG
Sbjct: 257 SLHPAETSMNDANRNDCAKPLTQIRNIPG 285


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 6/13 (46%), Positives = 8/13 (61%)

Query: 66  CEFIRNIPGCAGY 78
           CE   ++PGC  Y
Sbjct: 211 CEDPEDVPGCEDY 223


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 98  EHLVMALSMKLGPALKIVACIDSLRPESEQNL 129
           E L  +L+ +    L+    ++  RP+  QNL
Sbjct: 243 ESLKKSLNFRTPSCLETFHTLEKCRPDPPQNL 274


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 46  SADSAQAKIPNANKWTVAEVCEFIRNIPG 74
           S   A+  + + N+   A+    IRNIPG
Sbjct: 257 SLHPAETSMNDVNRNDCAKPLTQIRNIPG 285


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 37  VEMADSQPTSADSAQAKIPNANKWTVAEVC 66
           VE     PTS+ S + K  + ++    EVC
Sbjct: 111 VEEDSPSPTSSVSPEVKDSSRDRPFTCEVC 140


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.129    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,546
Number of Sequences: 317
Number of extensions: 784
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 133
length of database: 114,650
effective HSP length: 51
effective length of query: 82
effective length of database: 98,483
effective search space:  8075606
effective search space used:  8075606
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.6 bits)
S2: 39 (19.8 bits)