GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000510-TA|BGIBMGA000510-PA|IPR001660|Sterile alpha motif
SAM, IPR010993|Sterile alpha motif homology
         (133 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    44   6e-06
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    27   1.3  
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    24   9.1  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    24   9.1  

>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 44.4 bits (100), Expect = 6e-06
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 34  SSNVEMADSQPTSADSAQAKIPNANKWTVAEVCEFIRNIPGCAGYADEFLMQEVDGEALL 93
           SS +   +++P S+ +   KI N   W+  EV E++ N  G    A  F   E+ GE LL
Sbjct: 224 SSPLPYIENRPASSLAVSEKIQNVPNWSTEEVVEWLMN-AGLGSVAPNFAENEITGEILL 282

Query: 94  LIKPEHLVMALSMKLGPALKIVACIDSLRPESEQNLHD 131
            +    L        G   +++  I  L+   EQ+L++
Sbjct: 283 GLDSNVLKELNITSFGKRFEVLRKIQQLKDSYEQSLYE 320


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 11/30 (36%), Positives = 21/30 (70%)

Query: 98  EHLVMALSMKLGPALKIVACIDSLRPESEQ 127
           + L++A S K    +++ +CIDSL+ E+E+
Sbjct: 320 QELIVAESSKTQHIVELESCIDSLKAETER 349


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 34  SSNVEMADSQPTSADSAQAKIPNANKWTVAEVCEFIRNIPGCAGYADEFLMQEV 87
           ++NV++    P  ADS + +  N +     E    + NI   AG  + F+  E+
Sbjct: 307 ANNVQIIIPVPEDADSPRFQTSNGHVQYAPEQAAMVWNIKKFAGGKEFFMRAEM 360


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 25  RDANVKAEASSNVEMADSQPTSADSAQAKIPNANK 59
           R+  + +E +S     D+Q TS+DS  A++    K
Sbjct: 420 REQKLPSEQASKKRKQDTQETSSDSKLAEVKPKGK 454


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.129    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 503,703
Number of Sequences: 5004
Number of extensions: 15758
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 4
length of query: 133
length of database: 2,362,478
effective HSP length: 66
effective length of query: 67
effective length of database: 2,032,214
effective search space: 136158338
effective search space used: 136158338
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 49 (23.8 bits)